Wall clock time and date at job start Mon Mar 30 2020 01:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47315 * 2 1 4 4 C 1.50706 * 109.47169 * 239.99949 * 2 1 3 5 5 H 1.07999 * 120.00100 * 240.00496 * 4 2 1 6 6 C 1.37872 * 119.99929 * 59.99604 * 4 2 1 7 7 N 1.31513 * 120.00183 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00067 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47108 * 60.00411 * 8 6 4 10 10 H 1.48503 * 109.47409 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47232 * 300.00516 * 8 6 4 12 12 N 1.46500 * 109.47169 * 119.99999 * 2 1 3 13 13 C 1.34775 * 119.99770 * 275.00270 * 12 2 1 14 14 O 1.21277 * 120.00326 * 359.97438 * 13 12 2 15 15 C 1.50712 * 119.99728 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.46559 * 299.99766 * 15 13 12 17 17 C 1.52996 * 109.47086 * 59.99715 * 15 13 12 18 18 C 1.53002 * 109.46972 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.46817 * 299.99733 * 18 17 15 20 20 C 1.53006 * 109.47127 * 60.00361 * 19 18 17 21 21 H 1.08993 * 109.46955 * 60.00011 * 20 19 18 22 22 C 1.50698 * 109.47184 * 180.02562 * 20 19 18 23 23 O 1.20826 * 120.00750 * 119.99794 * 22 20 19 24 24 O 1.34231 * 119.99710 * 299.99740 * 22 20 19 25 25 C 1.52997 * 109.46964 * 179.97438 * 15 13 12 26 26 H 1.09001 * 109.47307 * 60.00315 * 1 2 3 27 27 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47365 * 299.99937 * 1 2 3 29 29 H 0.97004 * 120.00622 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99837 * 94.99547 * 12 2 1 31 31 H 1.08996 * 109.47452 * 59.99790 * 17 15 13 32 32 H 1.09000 * 109.47054 * 299.99950 * 17 15 13 33 33 H 1.09002 * 109.47070 * 179.97438 * 18 17 15 34 34 H 1.08996 * 109.47407 * 59.99513 * 18 17 15 35 35 H 1.09001 * 109.47502 * 300.00518 * 19 18 17 36 36 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 37 37 H 0.96709 * 117.00255 * 180.02562 * 24 22 20 38 38 H 1.09002 * 109.47153 * 60.00001 * 25 15 13 39 39 H 1.08993 * 109.47194 * 300.00289 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8280 -2.5198 -4.0082 10 1 1.8278 -0.4193 -5.2205 11 1 3.8075 -1.1190 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8589 1.1586 2.4115 15 6 2.6499 -0.7286 3.5875 16 1 1.9777 -1.5509 3.8325 17 6 4.0526 -1.2785 3.3214 18 6 4.5629 -2.0001 4.5703 19 6 4.6142 -1.0175 5.7418 20 6 3.2114 -0.4675 6.0080 21 1 2.5392 -1.2899 6.2527 22 6 3.2620 0.5008 7.1616 23 8 2.9244 1.6498 7.0012 24 8 3.6822 0.0869 8.3673 25 6 2.7018 0.2547 4.7586 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7093 1.1617 -3.4844 30 1 2.2490 -1.6318 1.1526 31 1 4.7248 -0.4562 3.0763 32 1 4.0160 -1.9788 2.4869 33 1 5.5621 -2.3923 4.3805 34 1 3.8906 -2.8224 4.8150 35 1 5.2864 -0.1951 5.4972 36 1 4.9781 -1.5314 6.6315 37 1 3.6970 0.7441 9.0766 38 1 1.7026 0.6468 4.9483 39 1 3.3741 1.0767 4.5133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310398597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:37 Heat of formation + Delta-G solvation = -161.667971 kcal Electronic energy + Delta-G solvation = -20972.025441 eV Core-core repulsion = 17685.166739 eV Total energy + Delta-G solvation = -3286.858702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74422 -39.35466 -37.32790 -36.23293 -34.75508 -32.50571 -31.49116 -30.92780 -28.64099 -25.24681 -24.61634 -23.70872 -21.49520 -20.92717 -19.83827 -19.27757 -18.14825 -17.45218 -16.41372 -15.95988 -15.52915 -15.21267 -14.99770 -14.59180 -14.13070 -13.89130 -13.53175 -13.32036 -12.76975 -12.52273 -12.50011 -12.24215 -11.77724 -11.64699 -11.44922 -11.24523 -11.08229 -10.94441 -10.83377 -10.76799 -10.70779 -10.49269 -10.30754 -10.23913 -10.20107 -9.03798 -8.88130 -8.52944 -7.86715 -6.10716 -4.20288 2.07761 2.85125 3.25840 3.31256 3.32130 3.43151 4.06784 4.35885 4.53113 4.62221 4.66833 4.97007 5.08839 5.19772 5.21252 5.22757 5.34829 5.37515 5.52246 5.67374 5.85441 5.88540 5.92650 6.09557 6.14009 6.28236 6.32791 6.47113 6.84950 6.99151 7.17801 7.50039 7.58662 7.71430 7.75080 7.93919 8.17275 8.70462 8.80294 9.17782 9.47563 10.95193 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036728 B = 0.003940 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.178746 B = 7104.492832 C = 7628.061486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.504 3.496 14 O -0.552 6.552 15 C -0.107 4.107 16 H 0.093 0.907 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.078 4.078 21 H 0.109 0.891 22 C 0.480 3.520 23 O -0.507 6.507 24 O -0.519 6.519 25 C -0.083 4.083 26 H 0.089 0.911 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.407 0.593 38 H 0.078 0.922 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.525 -7.579 17.518 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.356 5.356 13 C 0.289 3.711 14 O -0.431 6.431 15 C -0.128 4.128 16 H 0.111 0.889 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.097 4.097 21 H 0.127 0.873 22 C 0.322 3.678 23 O -0.394 6.394 24 O -0.331 6.331 25 C -0.121 4.121 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.114 -6.561 16.997 19.218 hybrid contribution 0.313 -0.451 -0.399 0.679 sum 6.428 -7.011 16.598 19.130 Atomic orbital electron populations 1.22076 0.98562 0.99034 1.00881 1.18724 0.90973 0.94003 0.80106 0.93430 1.21183 1.32472 1.13198 0.90375 0.92161 1.24890 0.94827 0.94956 0.99046 1.69896 1.35834 1.22406 1.23962 0.86514 0.79156 0.79572 0.81869 1.20176 1.21150 1.20188 1.46516 1.65073 1.13467 1.10544 1.20314 0.78643 0.87479 0.84709 1.90671 1.51230 1.16125 1.85093 1.21329 0.98235 0.98902 0.94372 0.88923 1.21581 0.95046 1.00615 0.98011 1.21528 1.01839 0.97686 0.94148 1.21559 0.94085 0.99736 0.99497 1.21138 1.00615 0.97033 0.90930 0.87295 1.23618 0.72581 0.88344 0.83286 1.90762 1.44277 1.20483 1.83898 1.84542 1.79647 1.47840 1.21115 1.21224 1.03437 0.97264 0.90181 0.89206 0.95530 0.96675 0.92529 0.78009 0.91091 0.90744 0.91023 0.91366 0.91225 0.90628 0.73457 0.90292 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.75 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -14.55 4.96 -54.93 -0.27 -14.82 16 13 C 0.50 9.93 7.12 -10.98 -0.08 9.86 16 14 O -0.55 -13.45 15.64 5.56 0.09 -13.36 16 15 C -0.11 -1.46 2.53 -91.77 -0.23 -1.69 16 16 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.11 -1.31 5.10 -26.73 -0.14 -1.44 16 18 C -0.11 -0.95 5.92 -26.73 -0.16 -1.11 16 19 C -0.11 -0.96 5.13 -26.73 -0.14 -1.10 16 20 C -0.08 -0.80 2.63 -91.75 -0.24 -1.04 16 21 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 22 C 0.48 5.44 7.63 36.00 0.27 5.72 16 23 O -0.51 -7.77 16.74 -18.75 -0.31 -8.08 16 24 O -0.52 -4.23 13.33 -39.26 -0.52 -4.75 16 25 C -0.08 -1.16 3.06 -26.71 -0.08 -1.24 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.39 6.79 7.96 -40.82 -0.32 6.47 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 37 H 0.41 1.70 9.10 45.56 0.41 2.12 16 38 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 39 H 0.08 1.29 8.06 -51.93 -0.42 0.88 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -33.54 321.51 -6.78 -40.33 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.19 Total: 6.28 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.02 Total: -1.58 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.35 Total: -39.26 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.75 Total: -26.19 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.54 -6.78 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310398597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.342 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds