Wall clock time and date at job start Mon Mar 30 2020 01:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47315 * 2 1 4 4 C 1.50706 * 109.47169 * 239.99949 * 2 1 3 5 5 H 1.07999 * 120.00100 * 240.00496 * 4 2 1 6 6 C 1.37872 * 119.99929 * 59.99604 * 4 2 1 7 7 N 1.31513 * 120.00183 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00067 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47108 * 60.00411 * 8 6 4 10 10 H 1.48503 * 109.47409 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47232 * 300.00516 * 8 6 4 12 12 N 1.46500 * 109.47169 * 119.99999 * 2 1 3 13 13 C 1.34775 * 119.99770 * 275.00270 * 12 2 1 14 14 O 1.21277 * 120.00326 * 359.97438 * 13 12 2 15 15 C 1.50712 * 119.99728 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.46559 * 299.99766 * 15 13 12 17 17 C 1.52996 * 109.47086 * 59.99715 * 15 13 12 18 18 C 1.53002 * 109.46972 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.46817 * 299.99733 * 18 17 15 20 20 C 1.53006 * 109.47127 * 60.00361 * 19 18 17 21 21 H 1.08993 * 109.46955 * 60.00011 * 20 19 18 22 22 C 1.50698 * 109.47184 * 180.02562 * 20 19 18 23 23 O 1.20826 * 120.00750 * 119.99794 * 22 20 19 24 24 O 1.34231 * 119.99710 * 299.99740 * 22 20 19 25 25 C 1.52997 * 109.46964 * 179.97438 * 15 13 12 26 26 H 1.09001 * 109.47307 * 60.00315 * 1 2 3 27 27 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47365 * 299.99937 * 1 2 3 29 29 H 0.97004 * 120.00622 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99837 * 94.99547 * 12 2 1 31 31 H 1.08996 * 109.47452 * 59.99790 * 17 15 13 32 32 H 1.09000 * 109.47054 * 299.99950 * 17 15 13 33 33 H 1.09002 * 109.47070 * 179.97438 * 18 17 15 34 34 H 1.08996 * 109.47407 * 59.99513 * 18 17 15 35 35 H 1.09001 * 109.47502 * 300.00518 * 19 18 17 36 36 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 37 37 H 0.96709 * 117.00255 * 180.02562 * 24 22 20 38 38 H 1.09002 * 109.47153 * 60.00001 * 25 15 13 39 39 H 1.08993 * 109.47194 * 300.00289 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8280 -2.5198 -4.0082 10 1 1.8278 -0.4193 -5.2205 11 1 3.8075 -1.1190 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8589 1.1586 2.4115 15 6 2.6499 -0.7286 3.5875 16 1 1.9777 -1.5509 3.8325 17 6 4.0526 -1.2785 3.3214 18 6 4.5629 -2.0001 4.5703 19 6 4.6142 -1.0175 5.7418 20 6 3.2114 -0.4675 6.0080 21 1 2.5392 -1.2899 6.2527 22 6 3.2620 0.5008 7.1616 23 8 2.9244 1.6498 7.0012 24 8 3.6822 0.0869 8.3673 25 6 2.7018 0.2547 4.7586 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7093 1.1617 -3.4844 30 1 2.2490 -1.6318 1.1526 31 1 4.7248 -0.4562 3.0763 32 1 4.0160 -1.9788 2.4869 33 1 5.5621 -2.3923 4.3805 34 1 3.8906 -2.8224 4.8150 35 1 5.2864 -0.1951 5.4972 36 1 4.9781 -1.5314 6.6315 37 1 3.6970 0.7441 9.0766 38 1 1.7026 0.6468 4.9483 39 1 3.3741 1.0767 4.5133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310398597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:37 Heat of formation + Delta-G solvation = -186.019666 kcal Electronic energy + Delta-G solvation = -20973.081409 eV Core-core repulsion = 17685.166739 eV Total energy + Delta-G solvation = -3287.914671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.70910 -40.74926 -38.47772 -37.08395 -36.67648 -34.36411 -32.69330 -31.86396 -30.47088 -27.34379 -25.50273 -24.99974 -22.67992 -22.22273 -21.10312 -20.65453 -19.20020 -18.78953 -17.80414 -17.19998 -17.05335 -16.73612 -16.16189 -16.01291 -15.40868 -14.93320 -14.82115 -14.49753 -14.41709 -13.98292 -13.68834 -13.44010 -13.33559 -12.96376 -12.83745 -12.69492 -12.59063 -12.38039 -12.25428 -12.20805 -12.12964 -11.81763 -11.60925 -11.41374 -11.15425 -11.08736 -10.62737 -10.47128 -9.72327 -8.16527 -6.34729 1.20782 1.45615 1.48132 1.55877 1.85151 2.06378 2.37984 2.68461 3.13769 3.58658 3.69985 3.79496 3.98644 4.13837 4.31081 4.41791 4.42283 4.43875 4.64623 4.68786 4.76450 4.91337 5.04500 5.08078 5.10373 5.16667 5.20947 5.29732 5.32844 5.44717 5.50567 5.62586 5.63567 5.70001 5.92192 6.10503 6.73708 6.99747 7.01205 7.33590 7.60835 8.89737 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036728 B = 0.003940 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.178746 B = 7104.492832 C = 7628.061486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.007 1.007 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.261 1.261 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.701 5.701 13 C 0.496 3.504 14 O -0.608 6.608 15 C -0.091 4.091 16 H 0.130 0.870 17 C -0.113 4.113 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.072 4.072 21 H 0.142 0.858 22 C 0.486 3.514 23 O -0.559 6.559 24 O -0.505 6.505 25 C -0.079 4.079 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.008 0.992 29 H 0.265 0.735 30 H 0.406 0.594 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.426 0.574 38 H 0.051 0.949 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.864 -11.305 18.658 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.010 0.990 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.799 3.201 9 H -0.186 1.186 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.350 5.350 13 C 0.284 3.716 14 O -0.490 6.490 15 C -0.112 4.112 16 H 0.147 0.853 17 C -0.151 4.151 18 C -0.142 4.142 19 C -0.145 4.145 20 C -0.091 4.091 21 H 0.160 0.840 22 C 0.330 3.670 23 O -0.450 6.450 24 O -0.318 6.318 25 C -0.118 4.118 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.242 0.758 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.287 0.713 38 H 0.070 0.930 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.484 -10.349 18.189 22.225 hybrid contribution -0.104 0.784 -0.676 1.040 sum 7.381 -9.565 17.513 21.276 Atomic orbital electron populations 1.21898 0.98459 0.99516 0.99359 1.18320 0.91050 0.91807 0.82340 0.98957 1.21530 1.32588 1.13602 0.90672 0.90517 1.25850 0.94864 0.95575 1.02497 1.70064 1.37115 1.24048 1.24639 0.85365 0.78661 0.78747 0.77362 1.18592 1.21418 1.19483 1.46244 1.65016 1.14208 1.09556 1.21469 0.77152 0.87017 0.85988 1.90647 1.53345 1.18926 1.86059 1.21321 1.00393 0.98920 0.90607 0.85258 1.21623 0.92732 1.00322 1.00458 1.21518 1.03368 0.97587 0.91722 1.21586 0.92383 0.99604 1.00895 1.21125 1.02430 0.96959 0.88556 0.84016 1.23804 0.71351 0.87589 0.84267 1.90761 1.46772 1.22656 1.84784 1.84484 1.78547 1.48183 1.20572 1.21086 1.01301 0.96901 0.92475 0.91644 0.93798 0.97252 0.92612 0.75805 0.93283 0.89838 0.89147 0.88748 0.92626 0.87962 0.71278 0.92994 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.18 2.56 44.25 0.11 14.29 16 3 H -0.01 -0.47 7.58 -2.39 -0.02 -0.49 16 4 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 9 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 N -0.70 -28.92 4.96 -446.09 -2.21 -31.13 16 13 C 0.50 20.01 7.12 87.66 0.62 20.64 16 14 O -0.61 -31.48 15.64 -3.02 -0.05 -31.53 16 15 C -0.09 -2.39 2.53 -11.54 -0.03 -2.42 16 16 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 17 C -0.11 -2.32 5.10 30.59 0.16 -2.17 16 18 C -0.10 -1.27 5.92 30.59 0.18 -1.09 16 19 C -0.11 -1.48 5.13 30.60 0.16 -1.32 16 20 C -0.07 -1.30 2.63 -11.52 -0.03 -1.33 16 21 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 22 C 0.49 10.38 7.63 71.24 0.54 10.93 16 23 O -0.56 -17.52 16.74 21.97 0.37 -17.15 16 24 O -0.50 -6.79 13.33 -51.42 -0.69 -7.47 16 25 C -0.08 -2.23 3.06 30.61 0.09 -2.13 16 26 H 0.06 3.72 6.07 -2.39 -0.01 3.70 16 27 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.41 13.58 7.96 -92.70 -0.74 12.84 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.58 7.56 -2.39 -0.02 1.56 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.96 8.11 -2.39 -0.02 0.94 16 37 H 0.43 2.52 9.10 -74.05 -0.67 1.85 16 38 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 39 H 0.05 1.58 8.06 -2.39 -0.02 1.56 16 Total: -1.00 -78.24 321.51 2.49 -75.75 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.35 Total: 19.47 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 3.15 Total: 1.56 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.97 Total: -84.50 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.36 Total: -56.16 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -78.24 2.49 -75.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310398597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.273 kcal (2) G-P(sol) polarization free energy of solvation -78.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds