Wall clock time and date at job start Mon Mar 30 2020 01:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00239 * 2 1 4 4 O 1.20821 * 120.00010 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99901 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47152 * 180.02562 * 5 3 2 7 7 C 1.37097 * 120.00376 * 86.60018 * 6 5 3 8 8 H 1.07995 * 120.00060 * 212.99081 * 7 6 5 9 9 C 1.38948 * 119.99453 * 32.98390 * 7 6 5 10 10 N 1.31409 * 120.00191 * 41.28033 * 9 7 6 11 11 Si 1.86801 * 119.99920 * 221.27545 * 9 7 6 12 12 H 1.48500 * 109.47346 * 265.00785 * 11 9 7 13 13 H 1.48500 * 109.47080 * 25.01234 * 11 9 7 14 14 H 1.48504 * 109.47218 * 145.01154 * 11 9 7 15 15 C 1.34786 * 120.00041 * 266.60201 * 6 5 3 16 16 O 1.21291 * 119.99566 * 0.02562 * 15 6 5 17 17 C 1.50695 * 120.00003 * 179.97438 * 15 6 5 18 18 H 1.09000 * 110.01803 * 58.60690 * 17 15 6 19 19 C 1.54271 * 110.03186 * 297.16975 * 17 15 6 20 20 C 1.54896 * 104.19491 * 217.10504 * 19 17 15 21 21 C 1.54897 * 102.74778 * 37.93903 * 20 19 17 22 22 H 1.09006 * 110.48313 * 80.73714 * 21 20 19 23 23 C 1.52996 * 110.60057 * 203.32172 * 21 20 19 24 24 C 1.53878 * 110.03233 * 180.02562 * 17 15 6 25 25 H 1.09009 * 109.46182 * 299.99814 * 1 2 3 26 26 H 1.08997 * 109.47060 * 59.99613 * 1 2 3 27 27 H 1.08992 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46920 * 60.00014 * 5 3 2 29 29 H 1.08997 * 109.47490 * 300.00229 * 5 3 2 30 30 H 0.96997 * 120.00040 * 359.97438 * 10 9 7 31 31 H 1.08995 * 110.48627 * 335.77825 * 19 17 15 32 32 H 1.08998 * 110.48857 * 98.43160 * 19 17 15 33 33 H 1.09001 * 110.75818 * 279.63031 * 20 19 17 34 34 H 1.08995 * 110.91953 * 156.32702 * 20 19 17 35 35 H 1.08995 * 109.47127 * 174.83845 * 23 21 20 36 36 H 1.08995 * 109.47447 * 294.84639 * 23 21 20 37 37 H 1.09010 * 109.46785 * 54.84145 * 23 21 20 38 38 H 1.09001 * 110.02943 * 238.56739 * 24 17 15 39 39 H 1.09001 * 110.03128 * 359.94979 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9819 2.6796 0.0002 7 6 4.1093 3.3562 1.1857 8 1 3.8867 4.4120 1.2315 9 6 4.5246 2.6834 2.3283 10 7 5.4915 1.7967 2.2538 11 14 3.7084 3.0395 3.9704 12 1 4.5028 4.0541 4.7084 13 1 2.3361 3.5577 3.7390 14 1 3.6374 1.7897 4.7693 15 6 4.2388 3.3070 -1.1648 16 8 4.1256 2.7085 -2.2137 17 6 4.6656 4.7522 -1.1640 18 1 5.5781 4.8715 -0.5798 19 6 3.5433 5.6344 -0.5791 20 6 3.5953 6.9283 -1.4289 21 6 3.9069 6.3926 -2.8485 22 1 2.9983 6.0247 -3.3253 23 6 4.5559 7.4820 -3.7045 24 6 4.8962 5.2345 -2.6070 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.9557 0.7808 -0.8909 29 1 3.9565 0.7804 0.8891 30 1 5.9151 1.6115 1.4011 31 1 2.5761 5.1441 -0.6895 32 1 3.7413 5.8583 0.4691 33 1 4.3912 7.5870 -1.0814 34 1 2.6349 7.4434 -1.4127 35 1 4.8504 7.0613 -4.6660 36 1 3.8433 8.2910 -3.8647 37 1 5.4367 7.8698 -3.1925 38 1 5.9205 5.5885 -2.7231 39 1 4.7002 4.4229 -3.3077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345247391.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:27 Heat of formation + Delta-G solvation = -128.876168 kcal Electronic energy + Delta-G solvation = -21931.946996 eV Core-core repulsion = 18646.510253 eV Total energy + Delta-G solvation = -3285.436743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.98416 -39.11859 -37.02212 -35.77698 -34.91091 -31.66646 -31.17702 -28.79108 -28.20405 -26.58231 -24.76920 -24.28083 -21.23811 -20.29375 -19.64794 -18.97945 -17.32233 -17.06859 -16.44845 -15.95058 -15.72360 -15.00119 -14.41836 -14.25218 -13.95514 -13.57799 -13.20099 -13.06834 -12.88763 -12.72715 -12.48855 -12.07335 -11.66440 -11.54236 -11.24209 -10.98755 -10.93248 -10.57487 -10.36689 -10.31739 -10.29326 -10.29180 -10.22066 -9.97194 -9.86555 -9.82567 -9.06264 -8.49770 -7.94343 -6.89796 -4.03134 2.95651 3.11299 3.19482 3.31032 3.49954 3.84922 4.14927 4.51364 4.82618 5.04959 5.11713 5.20987 5.39604 5.46277 5.53394 5.67852 5.78079 5.81377 5.87281 5.91609 5.97185 6.01702 6.13838 6.21214 6.24299 6.24443 6.32792 6.45784 6.56875 6.61583 6.79515 6.88142 6.92634 7.00832 7.45246 8.05063 8.21881 8.47510 8.89661 9.34171 9.70521 10.36361 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.007642 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.451755 B = 3663.255702 C = 4587.018035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.447 3.553 4 O -0.494 6.494 5 C 0.114 3.886 6 N -0.427 5.427 7 C -0.452 4.452 8 H 0.099 0.901 9 C 0.025 3.975 10 N -0.840 5.840 11 Si 1.052 2.948 12 H -0.282 1.282 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.483 3.517 16 O -0.604 6.604 17 C -0.084 4.084 18 H 0.090 0.910 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.097 4.097 22 H 0.069 0.931 23 C -0.140 4.140 24 C -0.114 4.114 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.280 0.720 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 3.379 -3.487 6.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.288 3.712 4 O -0.379 6.379 5 C -0.013 4.013 6 N -0.146 5.146 7 C -0.578 4.578 8 H 0.116 0.884 9 C -0.187 4.187 10 N -0.470 5.470 11 Si 0.877 3.123 12 H -0.208 1.208 13 H -0.205 1.205 14 H -0.204 1.204 15 C 0.274 3.726 16 O -0.490 6.490 17 C -0.106 4.106 18 H 0.108 0.892 19 C -0.141 4.141 20 C -0.158 4.158 21 C -0.116 4.116 22 H 0.087 0.913 23 C -0.198 4.198 24 C -0.152 4.152 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.006 2.958 -2.377 5.518 hybrid contribution -0.330 0.385 -1.358 1.449 sum -4.335 3.343 -3.734 6.627 Atomic orbital electron populations 1.23107 0.77878 1.02723 1.02065 1.86544 1.22412 1.34773 1.84966 1.24999 0.93161 0.81026 0.71981 1.90587 1.66730 1.36284 1.44297 1.20958 0.85993 0.88684 1.05616 1.43125 1.56695 1.08396 1.06397 1.20368 1.53699 0.97502 0.86221 0.88376 1.26269 0.93286 0.95828 1.03357 1.70807 1.13131 1.34173 1.28919 0.83804 0.76855 0.77072 0.74533 1.20793 1.20549 1.20445 1.20435 0.79581 0.89460 0.83099 1.90486 1.58489 1.68023 1.31988 1.21441 1.00027 0.92368 0.96720 0.89163 1.22297 0.98530 0.94047 0.99247 1.22616 1.00674 0.97530 0.95010 1.21951 0.98712 0.95307 0.95630 0.91254 1.21782 1.00251 0.98164 0.99557 1.22220 0.98148 0.98052 0.96738 0.92337 0.92513 0.88808 0.87661 0.86392 0.90871 0.91439 0.90487 0.91757 0.92221 0.93013 0.93209 0.92816 0.92368 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.16 10.57 -39.26 -0.41 -7.58 16 3 C 0.45 10.18 8.01 36.01 0.29 10.47 16 4 O -0.49 -12.37 16.14 -18.75 -0.30 -12.67 16 5 C 0.11 2.64 5.52 -5.20 -0.03 2.61 16 6 N -0.43 -10.57 1.90 -116.10 -0.22 -10.79 16 7 C -0.45 -11.33 8.19 -14.93 -0.12 -11.46 16 8 H 0.10 2.42 4.59 -52.49 -0.24 2.18 16 9 C 0.03 0.62 4.44 -17.47 -0.08 0.55 16 10 N -0.84 -21.70 12.49 55.50 0.69 -21.01 16 11 Si 1.05 22.53 30.06 -169.99 -5.11 17.42 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 15 C 0.48 11.75 6.89 -10.98 -0.08 11.67 16 16 O -0.60 -15.75 14.74 5.55 0.08 -15.67 16 17 C -0.08 -1.73 2.56 -90.65 -0.23 -1.96 16 18 H 0.09 1.86 8.08 -51.93 -0.42 1.44 16 19 C -0.10 -1.97 4.98 -25.07 -0.12 -2.09 16 20 C -0.12 -1.86 6.33 -24.73 -0.16 -2.01 16 21 C -0.10 -1.51 3.45 -88.99 -0.31 -1.82 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 C -0.14 -1.75 9.12 37.16 0.34 -1.41 16 24 C -0.11 -2.04 5.97 -25.64 -0.15 -2.20 16 25 H 0.06 0.87 8.13 -51.92 -0.42 0.44 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.11 2.35 7.32 -51.93 -0.38 1.97 16 29 H 0.12 2.76 5.94 -51.93 -0.31 2.45 16 30 H 0.28 7.33 8.06 -40.82 -0.33 7.00 16 31 H 0.07 1.45 7.85 -51.93 -0.41 1.05 16 32 H 0.08 1.47 6.35 -51.93 -0.33 1.14 16 33 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.64 8.12 -51.92 -0.42 0.21 16 38 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 39 H 0.08 1.71 6.39 -51.93 -0.33 1.38 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -29.52 318.79 -5.80 -35.32 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.75 Total: 6.21 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.42 Total: 3.95 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.47 Total: -31.79 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.64 Total: -35.92 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.11 Total: 17.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.52 -5.80 -35.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345247391.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.554 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds