Wall clock time and date at job start Mon Mar 30 2020 01:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99904 * 2 1 4 4 O 1.20830 * 120.00617 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99842 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47087 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00187 * 95.42489 * 6 5 3 8 8 H 1.08000 * 120.00061 * 214.85598 * 7 6 5 9 9 C 1.38954 * 120.00158 * 34.84698 * 7 6 5 10 10 N 1.31409 * 119.99848 * 21.00061 * 9 7 6 11 11 Si 1.86800 * 119.99915 * 200.99907 * 9 7 6 12 12 H 1.48503 * 109.47142 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47263 * 120.00072 * 11 9 7 14 14 H 1.48500 * 109.47011 * 240.00110 * 11 9 7 15 15 C 1.34775 * 119.99513 * 275.41779 * 6 5 3 16 16 O 1.21284 * 120.00340 * 0.02562 * 15 6 5 17 17 C 1.50707 * 119.99637 * 180.02562 * 15 6 5 18 18 H 1.09002 * 110.01582 * 300.06668 * 17 15 6 19 19 C 1.54271 * 110.03008 * 61.45559 * 17 15 6 20 20 C 1.54889 * 104.19266 * 142.89252 * 19 17 15 21 21 C 1.54886 * 102.75119 * 322.05961 * 20 19 17 22 22 H 1.09002 * 110.48585 * 279.26365 * 21 20 19 23 23 C 1.52996 * 110.48630 * 156.62016 * 21 20 19 24 24 C 1.53873 * 110.02933 * 178.62236 * 17 15 6 25 25 H 1.09003 * 109.47337 * 60.00074 * 1 2 3 26 26 H 1.09002 * 109.47662 * 300.00669 * 1 2 3 27 27 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46685 * 299.99319 * 5 3 2 29 29 H 1.08997 * 109.47333 * 59.99172 * 5 3 2 30 30 H 0.97002 * 120.00020 * 180.02562 * 10 9 7 31 31 H 1.08998 * 110.48419 * 261.57184 * 19 17 15 32 32 H 1.08996 * 110.48630 * 24.21921 * 19 17 15 33 33 H 1.09002 * 110.75686 * 80.37435 * 20 19 17 34 34 H 1.08998 * 110.75624 * 203.74138 * 20 19 17 35 35 H 1.08995 * 109.47359 * 61.45316 * 23 21 20 36 36 H 1.09007 * 109.47282 * 181.44793 * 23 21 20 37 37 H 1.08996 * 109.47480 * 301.44698 * 23 21 20 38 38 H 1.08993 * 110.03613 * 0.02562 * 24 17 15 39 39 H 1.08998 * 110.02898 * 121.43741 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2842 3.3056 1.1806 8 1 4.0465 4.3505 1.3145 9 6 4.8963 2.5954 2.2061 10 7 5.5515 1.4881 1.9385 11 14 4.7879 3.2147 3.9652 12 1 3.9995 4.4727 3.9994 13 1 4.1224 2.1909 4.8103 14 1 6.1551 3.4724 4.4843 15 6 4.0666 3.3568 -1.1633 16 8 3.7987 2.8032 -2.2087 17 6 4.4945 4.8019 -1.1639 18 1 3.8011 5.3965 -0.5691 19 6 5.9229 4.9302 -0.5955 20 6 6.5729 6.0465 -1.4503 21 6 6.0033 5.7701 -2.8638 22 1 6.5599 4.9685 -3.3494 23 6 6.0409 7.0413 -3.7143 24 6 4.5456 5.3358 -2.6061 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.9563 0.7806 0.8893 29 1 3.9557 0.7808 -0.8907 30 1 5.9785 0.9921 2.6545 31 1 5.8910 5.2230 0.4539 32 1 6.4666 3.9931 -0.7148 33 1 6.2675 7.0312 -1.0965 34 1 7.6588 5.9532 -1.4464 35 1 7.0734 7.3707 -3.8301 36 1 5.6132 6.8349 -4.6955 37 1 5.4627 7.8241 -3.2234 38 1 4.2605 4.5499 -3.3055 39 1 3.8772 6.1903 -2.7118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345247392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:29 Heat of formation + Delta-G solvation = -132.114755 kcal Electronic energy + Delta-G solvation = -21816.941353 eV Core-core repulsion = 18531.364175 eV Total energy + Delta-G solvation = -3285.577178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85376 -39.00624 -36.91017 -35.64788 -34.76572 -31.65754 -31.05273 -28.70795 -28.10703 -26.49501 -25.05138 -24.23359 -21.16143 -20.12769 -19.55970 -18.76851 -16.98932 -16.94688 -16.53407 -15.72102 -15.38146 -14.83582 -14.58010 -14.34867 -14.06461 -13.34446 -13.12552 -12.95398 -12.77724 -12.60567 -12.36991 -11.77517 -11.55200 -11.45587 -11.35611 -11.02258 -10.83544 -10.76687 -10.48285 -10.32012 -10.29013 -10.22111 -10.20484 -10.00756 -9.86153 -9.68243 -9.23375 -8.47981 -7.70752 -6.49806 -4.14741 3.05277 3.10137 3.18448 3.22745 3.28279 3.89964 4.10159 4.67652 4.90991 5.12446 5.18692 5.27885 5.45966 5.52273 5.64538 5.74739 5.84403 5.92647 5.96573 6.01332 6.04396 6.20692 6.23020 6.29565 6.36088 6.41067 6.52353 6.61028 6.75272 6.80539 6.87471 7.04525 7.05166 7.09034 7.38453 7.71903 8.23682 8.60233 8.98069 9.36601 9.80284 10.54183 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.007863 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.894003 B = 3560.003332 C = 4978.411685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.445 3.555 4 O -0.507 6.507 5 C 0.122 3.878 6 N -0.427 5.427 7 C -0.323 4.323 8 H 0.094 0.906 9 C 0.039 3.961 10 N -0.863 5.863 11 Si 0.913 3.087 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.492 3.508 16 O -0.599 6.599 17 C -0.089 4.089 18 H 0.083 0.917 19 C -0.093 4.093 20 C -0.123 4.123 21 C -0.097 4.097 22 H 0.070 0.930 23 C -0.140 4.140 24 C -0.114 4.114 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.097 0.903 30 H 0.272 0.728 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.772 3.025 -2.430 3.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.287 3.713 4 O -0.393 6.393 5 C -0.004 4.004 6 N -0.146 5.146 7 C -0.451 4.451 8 H 0.111 0.889 9 C -0.166 4.166 10 N -0.501 5.501 11 Si 0.739 3.261 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.205 1.205 15 C 0.282 3.718 16 O -0.484 6.484 17 C -0.110 4.110 18 H 0.101 0.899 19 C -0.131 4.131 20 C -0.161 4.161 21 C -0.116 4.116 22 H 0.089 0.911 23 C -0.198 4.198 24 C -0.152 4.152 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.165 0.835 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.033 2.907 -2.823 4.182 hybrid contribution -0.419 0.219 1.121 1.217 sum -1.452 3.125 -1.702 3.844 Atomic orbital electron populations 1.23080 0.78235 1.02563 1.01931 1.86553 1.22127 1.34961 1.84971 1.25432 0.93712 0.80795 0.71387 1.90566 1.67089 1.36427 1.45223 1.21028 0.83993 0.88126 1.07246 1.43014 1.57020 1.08594 1.05952 1.19467 1.38107 0.97107 0.90418 0.88851 1.25337 0.94110 0.96668 1.00488 1.69846 1.29580 1.17305 1.33357 0.86086 0.78233 0.79334 0.82456 1.19078 1.20480 1.20515 1.20443 0.79145 0.89228 0.83018 1.90486 1.55163 1.70669 1.32061 1.21513 0.98683 0.94007 0.96820 0.89880 1.22137 0.93377 0.98327 0.99215 1.22645 0.99330 0.99019 0.95070 1.21960 0.96856 0.97012 0.95745 0.91115 1.21786 1.00938 0.97494 0.99557 1.22224 0.95544 1.00633 0.96758 0.92565 0.92545 0.88945 0.83529 0.88496 0.91769 0.90595 0.91217 0.91973 0.92207 0.93201 0.93107 0.92909 0.89702 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.63 16 2 O -0.37 -7.36 10.56 -39.24 -0.41 -7.77 16 3 C 0.44 10.37 7.99 36.01 0.29 10.66 16 4 O -0.51 -12.96 16.06 -18.75 -0.30 -13.26 16 5 C 0.12 2.93 5.49 -5.19 -0.03 2.90 16 6 N -0.43 -10.72 2.09 -116.09 -0.24 -10.96 16 7 C -0.32 -7.99 7.22 -14.93 -0.11 -8.09 16 8 H 0.09 2.26 6.61 -52.49 -0.35 1.92 16 9 C 0.04 0.94 4.94 -17.47 -0.09 0.85 16 10 N -0.86 -21.44 11.32 55.50 0.63 -20.81 16 11 Si 0.91 19.06 29.60 -169.99 -5.03 14.03 16 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 C 0.49 12.10 6.71 -10.98 -0.07 12.02 16 16 O -0.60 -15.92 14.88 5.55 0.08 -15.84 16 17 C -0.09 -1.82 2.48 -90.65 -0.22 -2.05 16 18 H 0.08 1.69 7.66 -51.93 -0.40 1.29 16 19 C -0.09 -1.74 5.08 -25.07 -0.13 -1.87 16 20 C -0.12 -1.88 6.33 -24.74 -0.16 -2.03 16 21 C -0.10 -1.50 3.46 -88.96 -0.31 -1.81 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 C -0.14 -1.76 9.12 37.16 0.34 -1.42 16 24 C -0.11 -2.06 5.97 -25.61 -0.15 -2.21 16 25 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.15 3.59 5.37 -51.93 -0.28 3.31 16 29 H 0.10 2.30 7.59 -51.93 -0.39 1.90 16 30 H 0.27 6.36 8.31 -40.82 -0.34 6.03 16 31 H 0.08 1.44 7.27 -51.93 -0.38 1.06 16 32 H 0.07 1.47 7.85 -51.93 -0.41 1.06 16 33 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 38 H 0.08 1.73 6.39 -51.93 -0.33 1.40 16 39 H 0.06 0.93 7.81 -51.93 -0.41 0.52 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -29.22 319.19 -5.91 -35.13 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.87 Total: 6.10 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 0.43 Total: 8.58 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.39 Total: -31.77 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.63 Total: -36.87 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.22 -5.91 -35.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345247392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.984 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds