Wall clock time and date at job start Mon Mar 30 2020 01:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99904 * 2 1 4 4 O 1.20830 * 120.00617 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99842 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47087 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00187 * 95.42489 * 6 5 3 8 8 H 1.08000 * 120.00061 * 214.85598 * 7 6 5 9 9 C 1.38954 * 120.00158 * 34.84698 * 7 6 5 10 10 N 1.31409 * 119.99848 * 21.00061 * 9 7 6 11 11 Si 1.86800 * 119.99915 * 200.99907 * 9 7 6 12 12 H 1.48503 * 109.47142 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47263 * 120.00072 * 11 9 7 14 14 H 1.48500 * 109.47011 * 240.00110 * 11 9 7 15 15 C 1.34775 * 119.99513 * 275.41779 * 6 5 3 16 16 O 1.21284 * 120.00340 * 0.02562 * 15 6 5 17 17 C 1.50707 * 119.99637 * 180.02562 * 15 6 5 18 18 H 1.09002 * 110.01582 * 300.06668 * 17 15 6 19 19 C 1.54271 * 110.03008 * 61.45559 * 17 15 6 20 20 C 1.54889 * 104.19266 * 142.89252 * 19 17 15 21 21 C 1.54886 * 102.75119 * 322.05961 * 20 19 17 22 22 H 1.09002 * 110.48585 * 279.26365 * 21 20 19 23 23 C 1.52996 * 110.48630 * 156.62016 * 21 20 19 24 24 C 1.53873 * 110.02933 * 178.62236 * 17 15 6 25 25 H 1.09003 * 109.47337 * 60.00074 * 1 2 3 26 26 H 1.09002 * 109.47662 * 300.00669 * 1 2 3 27 27 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46685 * 299.99319 * 5 3 2 29 29 H 1.08997 * 109.47333 * 59.99172 * 5 3 2 30 30 H 0.97002 * 120.00020 * 180.02562 * 10 9 7 31 31 H 1.08998 * 110.48419 * 261.57184 * 19 17 15 32 32 H 1.08996 * 110.48630 * 24.21921 * 19 17 15 33 33 H 1.09002 * 110.75686 * 80.37435 * 20 19 17 34 34 H 1.08998 * 110.75624 * 203.74138 * 20 19 17 35 35 H 1.08995 * 109.47359 * 61.45316 * 23 21 20 36 36 H 1.09007 * 109.47282 * 181.44793 * 23 21 20 37 37 H 1.08996 * 109.47480 * 301.44698 * 23 21 20 38 38 H 1.08993 * 110.03613 * 0.02562 * 24 17 15 39 39 H 1.08998 * 110.02898 * 121.43741 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2842 3.3056 1.1806 8 1 4.0465 4.3505 1.3145 9 6 4.8963 2.5954 2.2061 10 7 5.5515 1.4881 1.9385 11 14 4.7879 3.2147 3.9652 12 1 3.9995 4.4727 3.9994 13 1 4.1224 2.1909 4.8103 14 1 6.1551 3.4724 4.4843 15 6 4.0666 3.3568 -1.1633 16 8 3.7987 2.8032 -2.2087 17 6 4.4945 4.8019 -1.1639 18 1 3.8011 5.3965 -0.5691 19 6 5.9229 4.9302 -0.5955 20 6 6.5729 6.0465 -1.4503 21 6 6.0033 5.7701 -2.8638 22 1 6.5599 4.9685 -3.3494 23 6 6.0409 7.0413 -3.7143 24 6 4.5456 5.3358 -2.6061 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.9563 0.7806 0.8893 29 1 3.9557 0.7808 -0.8907 30 1 5.9785 0.9921 2.6545 31 1 5.8910 5.2230 0.4539 32 1 6.4666 3.9931 -0.7148 33 1 6.2675 7.0312 -1.0965 34 1 7.6588 5.9532 -1.4464 35 1 7.0734 7.3707 -3.8301 36 1 5.6132 6.8349 -4.6955 37 1 5.4627 7.8241 -3.2234 38 1 4.2605 4.5499 -3.3055 39 1 3.8772 6.1903 -2.7118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345247392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:29 Heat of formation + Delta-G solvation = -147.993871 kcal Electronic energy + Delta-G solvation = -21817.629923 eV Core-core repulsion = 18531.364175 eV Total energy + Delta-G solvation = -3286.265749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66170 -40.72340 -38.44764 -37.41964 -36.68753 -33.56169 -32.46105 -30.32864 -29.56512 -27.98831 -26.82584 -25.66114 -22.83287 -21.79327 -21.03109 -20.44622 -18.76245 -18.74956 -18.31635 -17.40479 -17.09453 -16.48537 -16.37227 -15.99794 -15.57683 -14.97360 -14.60372 -14.43212 -14.38334 -14.11717 -13.67659 -13.43585 -13.20215 -12.96367 -12.83760 -12.68910 -12.59091 -12.38078 -12.06660 -11.93794 -11.81105 -11.63653 -11.58327 -11.50751 -11.39548 -11.25330 -11.06015 -10.38048 -9.63892 -8.36745 -6.08106 1.22537 1.39307 1.47857 1.57099 1.60679 2.07182 2.34549 2.89404 3.06687 3.77612 3.81163 3.96405 4.06493 4.24883 4.29034 4.31069 4.48845 4.56391 4.61308 4.63895 4.66636 4.73089 4.82687 4.85045 4.88992 5.08775 5.16588 5.20154 5.27972 5.31300 5.39418 5.46731 5.52189 5.57110 5.64636 5.83454 6.33690 6.79319 7.07387 7.45352 7.89896 8.68512 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.007863 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.894003 B = 3560.003332 C = 4978.411685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.450 3.550 4 O -0.534 6.534 5 C 0.119 3.881 6 N -0.436 5.436 7 C -0.339 4.339 8 H 0.095 0.905 9 C 0.007 3.993 10 N -0.887 5.887 11 Si 0.974 3.026 12 H -0.263 1.263 13 H -0.279 1.279 14 H -0.272 1.272 15 C 0.474 3.526 16 O -0.630 6.630 17 C -0.090 4.090 18 H 0.084 0.916 19 C -0.087 4.087 20 C -0.111 4.111 21 C -0.094 4.094 22 H 0.058 0.942 23 C -0.134 4.134 24 C -0.110 4.110 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.277 0.723 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 4.301 -1.772 4.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.293 3.707 4 O -0.423 6.423 5 C -0.007 4.007 6 N -0.154 5.154 7 C -0.466 4.466 8 H 0.112 0.888 9 C -0.196 4.196 10 N -0.524 5.524 11 Si 0.798 3.202 12 H -0.187 1.187 13 H -0.205 1.205 14 H -0.197 1.197 15 C 0.265 3.735 16 O -0.518 6.518 17 C -0.111 4.111 18 H 0.102 0.898 19 C -0.125 4.125 20 C -0.148 4.148 21 C -0.112 4.112 22 H 0.077 0.923 23 C -0.191 4.191 24 C -0.148 4.148 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.927 4.163 -2.162 4.781 hybrid contribution -0.523 -0.324 0.907 1.096 sum -1.450 3.839 -1.255 4.291 Atomic orbital electron populations 1.23526 0.75198 1.05722 1.02070 1.86511 1.24968 1.32823 1.84152 1.25116 0.93425 0.81331 0.70851 1.90540 1.67589 1.37491 1.46696 1.20965 0.85068 0.88082 1.06601 1.43240 1.56889 1.08846 1.06383 1.19639 1.38887 0.97449 0.90642 0.88763 1.26053 0.93325 0.96739 1.03520 1.69911 1.29806 1.18140 1.34572 0.85151 0.78396 0.78771 0.77856 1.18734 1.20500 1.19696 1.21247 0.78785 0.90951 0.82507 1.90446 1.56592 1.71790 1.32951 1.21612 0.99477 0.91269 0.98716 0.89798 1.22037 0.92313 0.98355 0.99786 1.22609 1.00015 0.98398 0.93791 1.21936 0.94514 0.98288 0.96500 0.92319 1.21735 1.02453 0.95848 0.99086 1.22207 0.98075 1.00250 0.94295 0.92648 0.92264 0.84284 0.84032 0.89172 0.91303 0.90901 0.94357 0.89739 0.90567 0.91348 0.92743 0.91842 0.92581 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.01 16 2 O -0.37 -14.53 10.56 -51.35 -0.54 -15.08 16 3 C 0.45 21.34 7.99 71.24 0.57 21.91 16 4 O -0.53 -27.77 16.06 21.95 0.35 -27.42 16 5 C 0.12 5.90 5.49 85.63 0.47 6.37 16 6 N -0.44 -22.53 2.09 -639.59 -1.34 -23.87 16 7 C -0.34 -16.98 7.22 84.04 0.61 -16.37 16 8 H 0.09 4.61 6.61 -2.91 -0.02 4.59 16 9 C 0.01 0.32 4.94 84.93 0.42 0.74 16 10 N -0.89 -44.42 11.32 21.66 0.25 -44.17 16 11 Si 0.97 38.56 29.60 68.60 2.03 40.59 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 14 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 15 C 0.47 24.16 6.71 87.66 0.59 24.74 16 16 O -0.63 -35.02 14.88 -3.04 -0.05 -35.06 16 17 C -0.09 -3.72 2.48 -10.81 -0.03 -3.75 16 18 H 0.08 3.43 7.66 -2.39 -0.02 3.41 16 19 C -0.09 -3.27 5.08 31.67 0.16 -3.11 16 20 C -0.11 -3.14 6.33 31.88 0.20 -2.94 16 21 C -0.09 -2.75 3.46 -9.72 -0.03 -2.78 16 22 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 23 C -0.13 -2.95 9.12 71.98 0.66 -2.29 16 24 C -0.11 -3.96 5.97 31.32 0.19 -3.78 16 25 H 0.05 1.63 8.13 -2.39 -0.02 1.62 16 26 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 27 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.14 7.14 5.37 -2.38 -0.01 7.13 16 29 H 0.09 4.50 7.59 -2.39 -0.02 4.48 16 30 H 0.28 12.95 8.31 -92.71 -0.77 12.18 16 31 H 0.07 2.74 7.27 -2.39 -0.02 2.72 16 32 H 0.04 1.65 7.85 -2.39 -0.02 1.64 16 33 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 38 H 0.06 2.35 6.39 -2.39 -0.02 2.33 16 39 H 0.08 2.38 7.81 -2.39 -0.02 2.36 16 Total: -1.00 -64.19 319.19 6.74 -57.45 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 1.04 Total: 26.79 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 5.00 Total: 20.76 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -1.09 Total: -68.04 kcal Atomic # 8 Polarization: -77.32 SS G_CDS: -0.24 Total: -77.55 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -64.19 6.74 -57.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345247392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.546 kcal (2) G-P(sol) polarization free energy of solvation -64.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds