Wall clock time and date at job start Mon Mar 30 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99772 * 2 1 4 4 O 1.20826 * 119.99836 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99877 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47188 * 180.02562 * 5 3 2 7 7 C 1.37107 * 120.00013 * 95.80590 * 6 5 3 8 8 H 1.08004 * 119.99250 * 166.16382 * 7 6 5 9 9 C 1.38940 * 120.00208 * 346.16593 * 7 6 5 10 10 N 1.31413 * 120.00164 * 336.94173 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 157.21358 * 9 7 6 12 12 H 1.48505 * 109.47114 * 269.72790 * 11 9 7 13 13 H 1.48493 * 109.47191 * 29.72277 * 11 9 7 14 14 H 1.48497 * 109.47161 * 149.72563 * 11 9 7 15 15 C 1.34774 * 119.99942 * 275.80962 * 6 5 3 16 16 O 1.21294 * 120.00194 * 0.02562 * 15 6 5 17 17 C 1.50703 * 120.00211 * 179.97438 * 15 6 5 18 18 H 1.09008 * 110.01452 * 300.06164 * 17 15 6 19 19 C 1.53878 * 110.03258 * 61.45057 * 17 15 6 20 20 C 1.54268 * 106.59733 * 119.28649 * 19 17 15 21 21 C 1.54885 * 104.19475 * 23.60990 * 20 19 17 22 22 H 1.09005 * 110.75673 * 80.55936 * 21 20 19 23 23 C 1.52999 * 110.75881 * 203.74361 * 21 20 19 24 24 C 1.54261 * 110.03563 * 178.62099 * 17 15 6 25 25 H 1.08998 * 109.47219 * 59.99860 * 1 2 3 26 26 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47169 * 299.99807 * 1 2 3 28 28 H 1.08997 * 109.47121 * 59.99870 * 5 3 2 29 29 H 1.09006 * 109.47075 * 300.00134 * 5 3 2 30 30 H 0.97001 * 120.00301 * 180.27846 * 10 9 7 31 31 H 1.09001 * 110.03231 * 238.57292 * 19 17 15 32 32 H 1.08996 * 110.02999 * 359.95315 * 19 17 15 33 33 H 1.08997 * 110.48385 * 142.28766 * 20 19 17 34 34 H 1.09004 * 110.48399 * 264.93412 * 20 19 17 35 35 H 1.08995 * 109.47232 * 58.54252 * 23 21 20 36 36 H 1.08998 * 109.47376 * 178.55119 * 23 21 20 37 37 H 1.09006 * 109.47101 * 298.55044 * 23 21 20 38 38 H 1.09003 * 110.48252 * 335.78278 * 24 17 15 39 39 H 1.09005 * 110.48918 * 98.42319 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2908 3.3029 1.1826 8 1 4.8051 4.2526 1.1738 9 6 3.9425 2.7126 2.3912 10 7 2.9617 1.8391 2.4374 11 14 4.8634 3.1661 3.9519 12 1 6.0189 2.2502 4.1287 13 1 5.3516 4.5647 3.8498 14 1 3.9519 3.0438 5.1178 15 6 4.0599 3.3598 -1.1599 16 8 3.7859 2.8088 -2.2052 17 6 4.4866 4.8052 -1.1594 18 1 3.7959 5.3979 -0.5595 19 6 5.9143 4.9331 -0.5997 20 6 6.7751 5.5451 -1.7241 21 6 5.7553 6.2909 -2.6201 22 1 5.5028 7.2613 -2.1927 23 6 6.2981 6.4515 -4.0415 24 6 4.5297 5.3440 -2.6042 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.9564 0.7807 -0.8891 29 1 3.9557 0.7810 0.8909 30 1 2.7159 1.4300 3.2818 31 1 5.9165 5.5885 0.2712 32 1 6.2981 3.9499 -0.3277 33 1 7.5021 6.2440 -1.3104 34 1 7.2778 4.7605 -2.2897 35 1 6.5142 5.4690 -4.4611 36 1 5.5547 6.9550 -4.6596 37 1 7.2121 7.0449 -4.0166 38 1 4.6697 4.5269 -3.3120 39 1 3.6180 5.8960 -2.8329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345247395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:34 Heat of formation + Delta-G solvation = -125.668795 kcal Electronic energy + Delta-G solvation = -21961.870981 eV Core-core repulsion = 18676.573321 eV Total energy + Delta-G solvation = -3285.297661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.64807 -38.82177 -36.89976 -35.32492 -34.60819 -31.65734 -31.09125 -28.59287 -28.12518 -26.35590 -25.03528 -24.30228 -21.05221 -20.01233 -19.54678 -18.82236 -17.06876 -16.54896 -16.11116 -15.52327 -15.38847 -15.11072 -14.43161 -14.34610 -13.70489 -13.37298 -13.18656 -12.88562 -12.66539 -12.44779 -12.20253 -11.82636 -11.56148 -11.32813 -11.26802 -10.90144 -10.82167 -10.72176 -10.59183 -10.38469 -10.30086 -10.14592 -10.01925 -9.95316 -9.81097 -9.55137 -8.98293 -8.45859 -7.95679 -6.50098 -3.94599 3.07822 3.18653 3.20930 3.51010 3.70260 4.02171 4.09881 4.64490 4.94293 5.05159 5.11395 5.24663 5.66660 5.70772 5.74900 5.78925 5.86958 5.95114 5.96109 6.04322 6.09537 6.13286 6.21443 6.26102 6.33006 6.42019 6.43589 6.55952 6.57293 6.69999 6.80573 6.86002 7.00591 7.40032 7.47367 7.61238 8.26869 8.99841 9.11477 9.40860 9.81530 10.57733 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.007710 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.651856 B = 3630.937800 C = 5037.712718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.501 6.501 5 C 0.154 3.846 6 N -0.430 5.430 7 C -0.336 4.336 8 H 0.113 0.887 9 C 0.035 3.965 10 N -0.869 5.869 11 Si 0.922 3.078 12 H -0.276 1.276 13 H -0.269 1.269 14 H -0.285 1.285 15 C 0.476 3.524 16 O -0.603 6.603 17 C -0.091 4.091 18 H 0.088 0.912 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.100 4.100 22 H 0.070 0.930 23 C -0.141 4.141 24 C -0.104 4.104 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.272 0.728 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 2.279 -3.504 5.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.326 3.674 4 O -0.386 6.386 5 C 0.028 3.972 6 N -0.148 5.148 7 C -0.463 4.463 8 H 0.131 0.869 9 C -0.170 4.170 10 N -0.508 5.508 11 Si 0.748 3.252 12 H -0.202 1.202 13 H -0.194 1.194 14 H -0.211 1.211 15 C 0.266 3.734 16 O -0.489 6.489 17 C -0.112 4.112 18 H 0.106 0.894 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.118 4.118 22 H 0.089 0.911 23 C -0.198 4.198 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.481 2.193 -3.837 5.626 hybrid contribution -0.162 0.250 1.239 1.275 sum 3.319 2.443 -2.597 4.871 Atomic orbital electron populations 1.22932 0.78774 1.01799 1.01619 1.86464 1.21648 1.35541 1.85671 1.24060 0.92375 0.80522 0.70492 1.90511 1.66550 1.36415 1.45132 1.20542 0.87069 0.85941 1.03603 1.43431 1.57132 1.08017 1.06261 1.19913 1.36703 1.07608 0.82034 0.86941 1.25210 0.95110 0.97187 0.99470 1.69903 1.23539 1.29640 1.27697 0.86001 0.79286 0.79134 0.80731 1.20193 1.19367 1.21112 1.20169 0.81503 0.88322 0.83442 1.90504 1.55809 1.70412 1.32152 1.21562 0.97804 0.94602 0.97244 0.89417 1.22134 0.93520 1.01741 0.97224 1.22457 0.97323 0.99006 0.96926 1.22121 0.95955 0.98561 0.95189 0.91125 1.21740 1.00160 1.01535 0.96373 1.22348 0.96727 0.98547 0.96552 0.93171 0.89603 0.92633 0.90166 0.85693 0.91790 0.91605 0.90588 0.92264 0.91867 0.92625 0.93048 0.93205 0.89868 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.30 10.57 -39.27 -0.41 -8.72 16 3 C 0.48 12.26 6.21 36.01 0.22 12.49 16 4 O -0.50 -14.20 15.90 -18.75 -0.30 -14.50 16 5 C 0.15 3.75 5.14 -5.20 -0.03 3.73 16 6 N -0.43 -10.78 2.16 -116.09 -0.25 -11.03 16 7 C -0.34 -8.27 8.41 -14.93 -0.13 -8.40 16 8 H 0.11 2.59 4.82 -52.48 -0.25 2.34 16 9 C 0.03 0.85 4.87 -17.47 -0.09 0.77 16 10 N -0.87 -22.48 9.37 55.50 0.52 -21.96 16 11 Si 0.92 19.08 29.61 -169.99 -5.03 14.05 16 12 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 14 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.48 11.62 6.63 -10.98 -0.07 11.55 16 16 O -0.60 -16.01 15.09 5.55 0.08 -15.93 16 17 C -0.09 -1.83 2.46 -90.65 -0.22 -2.05 16 18 H 0.09 1.82 8.10 -51.92 -0.42 1.40 16 19 C -0.11 -1.88 4.62 -25.61 -0.12 -2.00 16 20 C -0.12 -1.74 6.28 -25.07 -0.16 -1.89 16 21 C -0.10 -1.42 3.49 -88.63 -0.31 -1.73 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 C -0.14 -1.72 9.27 37.16 0.34 -1.38 16 24 C -0.10 -1.84 5.59 -25.08 -0.14 -1.98 16 25 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.08 1.84 7.60 -51.93 -0.39 1.44 16 29 H 0.13 3.01 6.22 -51.93 -0.32 2.69 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.07 1.08 7.56 -51.93 -0.39 0.69 16 32 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.63 6.78 -51.93 -0.35 1.27 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -30.64 315.23 -6.12 -36.76 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.86 Total: 5.64 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 0.38 Total: 10.94 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.27 Total: -33.00 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.63 Total: -39.15 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.64 -6.12 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345247395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.908 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds