Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99772 * 2 1 4 4 O 1.20826 * 119.99836 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99877 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47188 * 180.02562 * 5 3 2 7 7 C 1.37107 * 120.00013 * 95.80590 * 6 5 3 8 8 H 1.08004 * 119.99250 * 166.16382 * 7 6 5 9 9 C 1.38940 * 120.00208 * 346.16593 * 7 6 5 10 10 N 1.31413 * 120.00164 * 336.94173 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 157.21358 * 9 7 6 12 12 H 1.48505 * 109.47114 * 269.72790 * 11 9 7 13 13 H 1.48493 * 109.47191 * 29.72277 * 11 9 7 14 14 H 1.48497 * 109.47161 * 149.72563 * 11 9 7 15 15 C 1.34774 * 119.99942 * 275.80962 * 6 5 3 16 16 O 1.21294 * 120.00194 * 0.02562 * 15 6 5 17 17 C 1.50703 * 120.00211 * 179.97438 * 15 6 5 18 18 H 1.09008 * 110.01452 * 300.06164 * 17 15 6 19 19 C 1.53878 * 110.03258 * 61.45057 * 17 15 6 20 20 C 1.54268 * 106.59733 * 119.28649 * 19 17 15 21 21 C 1.54885 * 104.19475 * 23.60990 * 20 19 17 22 22 H 1.09005 * 110.75673 * 80.55936 * 21 20 19 23 23 C 1.52999 * 110.75881 * 203.74361 * 21 20 19 24 24 C 1.54261 * 110.03563 * 178.62099 * 17 15 6 25 25 H 1.08998 * 109.47219 * 59.99860 * 1 2 3 26 26 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47169 * 299.99807 * 1 2 3 28 28 H 1.08997 * 109.47121 * 59.99870 * 5 3 2 29 29 H 1.09006 * 109.47075 * 300.00134 * 5 3 2 30 30 H 0.97001 * 120.00301 * 180.27846 * 10 9 7 31 31 H 1.09001 * 110.03231 * 238.57292 * 19 17 15 32 32 H 1.08996 * 110.02999 * 359.95315 * 19 17 15 33 33 H 1.08997 * 110.48385 * 142.28766 * 20 19 17 34 34 H 1.09004 * 110.48399 * 264.93412 * 20 19 17 35 35 H 1.08995 * 109.47232 * 58.54252 * 23 21 20 36 36 H 1.08998 * 109.47376 * 178.55119 * 23 21 20 37 37 H 1.09006 * 109.47101 * 298.55044 * 23 21 20 38 38 H 1.09003 * 110.48252 * 335.78278 * 24 17 15 39 39 H 1.09005 * 110.48918 * 98.42319 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2908 3.3029 1.1826 8 1 4.8051 4.2526 1.1738 9 6 3.9425 2.7126 2.3912 10 7 2.9617 1.8391 2.4374 11 14 4.8634 3.1661 3.9519 12 1 6.0189 2.2502 4.1287 13 1 5.3516 4.5647 3.8498 14 1 3.9519 3.0438 5.1178 15 6 4.0599 3.3598 -1.1599 16 8 3.7859 2.8088 -2.2052 17 6 4.4866 4.8052 -1.1594 18 1 3.7959 5.3979 -0.5595 19 6 5.9143 4.9331 -0.5997 20 6 6.7751 5.5451 -1.7241 21 6 5.7553 6.2909 -2.6201 22 1 5.5028 7.2613 -2.1927 23 6 6.2981 6.4515 -4.0415 24 6 4.5297 5.3440 -2.6042 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.9564 0.7807 -0.8891 29 1 3.9557 0.7810 0.8909 30 1 2.7159 1.4300 3.2818 31 1 5.9165 5.5885 0.2712 32 1 6.2981 3.9499 -0.3277 33 1 7.5021 6.2440 -1.3104 34 1 7.2778 4.7605 -2.2897 35 1 6.5142 5.4690 -4.4611 36 1 5.5547 6.9550 -4.6596 37 1 7.2121 7.0449 -4.0166 38 1 4.6697 4.5269 -3.3120 39 1 3.6180 5.8960 -2.8329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345247395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = -142.945532 kcal Electronic energy + Delta-G solvation = -21962.620157 eV Core-core repulsion = 18676.573321 eV Total energy + Delta-G solvation = -3286.046836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50373 -40.59192 -38.41634 -37.22355 -36.56861 -33.52852 -32.49017 -30.23671 -29.58501 -27.95036 -26.78846 -25.73726 -22.72633 -21.75693 -20.81226 -20.60864 -18.89514 -18.46724 -17.89442 -17.27983 -17.00665 -16.81461 -16.18381 -16.08107 -15.21477 -15.00020 -14.53273 -14.42857 -14.22929 -14.01131 -13.76366 -13.46607 -13.13036 -12.91586 -12.86708 -12.57107 -12.43636 -12.19163 -12.10958 -11.98363 -11.63123 -11.60858 -11.53780 -11.50024 -11.30260 -11.28044 -10.92078 -10.35098 -9.89738 -8.37893 -5.88718 1.41797 1.49872 1.60255 1.66223 1.77500 2.23168 2.33835 2.86835 3.13268 3.73443 3.79613 3.97175 4.21960 4.31804 4.34497 4.37852 4.45419 4.54275 4.63563 4.66182 4.67571 4.75926 4.76841 4.81966 4.84305 5.01842 5.15091 5.19600 5.25959 5.39421 5.43815 5.48804 5.54021 5.59587 5.65584 5.73136 6.36222 7.08431 7.16795 7.50639 7.91194 8.70111 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.007710 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.651856 B = 3630.937800 C = 5037.712718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.486 3.514 4 O -0.540 6.540 5 C 0.150 3.850 6 N -0.439 5.439 7 C -0.351 4.351 8 H 0.126 0.874 9 C -0.008 4.008 10 N -0.899 5.899 11 Si 0.992 3.008 12 H -0.268 1.268 13 H -0.256 1.256 14 H -0.293 1.293 15 C 0.460 3.540 16 O -0.634 6.634 17 C -0.092 4.092 18 H 0.078 0.922 19 C -0.104 4.104 20 C -0.113 4.113 21 C -0.090 4.090 22 H 0.087 0.913 23 C -0.138 4.138 24 C -0.103 4.103 25 H 0.050 0.950 26 H 0.136 0.864 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.271 0.729 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 3.443 -3.040 7.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.329 3.671 4 O -0.428 6.428 5 C 0.024 3.976 6 N -0.157 5.157 7 C -0.477 4.477 8 H 0.144 0.856 9 C -0.209 4.209 10 N -0.538 5.538 11 Si 0.815 3.185 12 H -0.194 1.194 13 H -0.180 1.180 14 H -0.219 1.219 15 C 0.252 3.748 16 O -0.523 6.523 17 C -0.113 4.113 18 H 0.096 0.904 19 C -0.142 4.142 20 C -0.150 4.150 21 C -0.109 4.109 22 H 0.106 0.894 23 C -0.195 4.195 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.154 0.846 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.885 3.342 -3.378 6.815 hybrid contribution -0.721 -0.216 1.074 1.312 sum 4.164 3.127 -2.304 5.694 Atomic orbital electron populations 1.23309 0.76151 1.04961 1.01183 1.86430 1.24184 1.33756 1.84962 1.24185 0.92726 0.80760 0.69423 1.90477 1.67418 1.37771 1.47156 1.20601 0.86969 0.86290 1.03711 1.43684 1.56931 1.08263 1.06798 1.20334 1.36931 1.08382 0.82093 0.85628 1.26117 0.95385 0.97065 1.02371 1.70013 1.24715 1.30764 1.28290 0.84936 0.77762 0.79559 0.76202 1.19374 1.17977 1.21907 1.20996 0.81019 0.89969 0.82855 1.90463 1.57176 1.71543 1.33096 1.21642 0.99274 0.91417 0.98998 0.90410 1.22098 0.91997 1.01350 0.98775 1.22442 0.97349 0.99402 0.95801 1.22108 0.93884 0.98156 0.96716 0.89425 1.21716 1.01326 1.01597 0.94864 1.22332 0.98835 0.98628 0.94287 0.93144 0.84627 0.93589 0.89554 0.85776 0.91937 0.90316 0.92453 0.89266 0.92155 0.93532 0.92345 0.90876 0.92179 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.51 16 2 O -0.38 -16.71 10.57 -51.46 -0.54 -17.26 16 3 C 0.49 25.21 6.21 71.24 0.44 25.65 16 4 O -0.54 -31.51 15.90 21.96 0.35 -31.16 16 5 C 0.15 7.52 5.14 85.63 0.44 7.96 16 6 N -0.44 -22.53 2.16 -639.60 -1.38 -23.91 16 7 C -0.35 -17.38 8.41 84.04 0.71 -16.67 16 8 H 0.13 5.72 4.82 -2.91 -0.01 5.71 16 9 C -0.01 -0.40 4.87 84.92 0.41 0.02 16 10 N -0.90 -47.00 9.37 21.66 0.20 -46.80 16 11 Si 0.99 38.56 29.61 68.60 2.03 40.59 16 12 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 13 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 14 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 15 C 0.46 23.12 6.63 87.66 0.58 23.70 16 16 O -0.63 -34.94 15.09 -3.07 -0.05 -34.99 16 17 C -0.09 -3.73 2.46 -10.82 -0.03 -3.76 16 18 H 0.08 3.27 8.10 -2.38 -0.02 3.25 16 19 C -0.10 -3.50 4.62 31.32 0.14 -3.35 16 20 C -0.11 -2.97 6.28 31.67 0.20 -2.77 16 21 C -0.09 -2.35 3.49 -9.50 -0.03 -2.38 16 22 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 23 C -0.14 -2.99 9.27 71.98 0.67 -2.33 16 24 C -0.10 -3.62 5.59 31.67 0.18 -3.44 16 25 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 26 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 27 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 28 H 0.09 4.10 7.60 -2.39 -0.02 4.09 16 29 H 0.12 6.16 6.22 -2.38 -0.01 6.14 16 30 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.08 2.41 7.56 -2.39 -0.02 2.39 16 32 H 0.06 2.13 7.02 -2.39 -0.02 2.12 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.63 8.05 -2.38 -0.02 1.61 16 35 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.06 2.39 6.78 -2.39 -0.02 2.38 16 39 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -67.44 315.23 6.56 -60.88 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 1.04 Total: 27.52 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 4.91 Total: 25.13 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -1.18 Total: -70.71 kcal Atomic # 8 Polarization: -83.16 SS G_CDS: -0.24 Total: -83.40 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -67.44 6.56 -60.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345247395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.067 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds