Wall clock time and date at job start Mon Mar 30 2020 01:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47619 * 2 1 4 4 C 1.52998 * 109.47280 * 120.00390 * 2 1 3 5 5 C 1.52998 * 109.47467 * 184.99589 * 4 2 1 6 6 C 1.50697 * 109.47332 * 179.97438 * 5 4 2 7 7 C 1.38240 * 119.98579 * 265.28065 * 6 5 4 8 8 C 1.38183 * 120.04766 * 180.23566 * 7 6 5 9 9 C 1.38497 * 120.02410 * 359.48424 * 8 7 6 10 10 F 1.35100 * 120.01141 * 180.27958 * 9 8 7 11 11 C 1.38395 * 119.97917 * 0.26183 * 9 8 7 12 12 C 1.38441 * 119.94711 * 359.97438 * 11 9 8 13 13 F 1.35097 * 120.01700 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.47086 * 240.00108 * 2 1 3 15 15 C 1.46908 * 111.00002 * 85.00070 * 14 2 1 16 16 C 1.50697 * 109.47200 * 180.02562 * 15 14 2 17 17 H 1.08003 * 120.00012 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00063 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00322 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00061 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47206 * 89.99966 * 20 18 16 22 22 H 1.48500 * 109.47292 * 210.00348 * 20 18 16 23 23 H 1.48503 * 109.46826 * 330.00491 * 20 18 16 24 24 H 1.08996 * 109.46867 * 299.99581 * 1 2 3 25 25 H 1.09000 * 109.46676 * 60.00076 * 1 2 3 26 26 H 1.09002 * 109.46880 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47078 * 64.99682 * 4 2 1 28 28 H 1.09002 * 109.47307 * 305.00167 * 4 2 1 29 29 H 1.09005 * 109.46449 * 60.00170 * 5 4 2 30 30 H 1.09002 * 109.47329 * 300.00564 * 5 4 2 31 31 H 1.07995 * 119.97395 * 359.97240 * 7 6 5 32 32 H 1.08002 * 119.98955 * 179.76951 * 8 7 6 33 33 H 1.07993 * 120.03158 * 179.97438 * 11 9 8 34 34 H 1.00900 * 111.00178 * 208.95088 * 14 2 1 35 35 H 1.08997 * 109.46872 * 300.00502 * 15 14 2 36 36 H 1.08994 * 109.46650 * 59.99977 * 15 14 2 37 37 H 0.97003 * 120.00335 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6135 1.3136 6 6 4.0672 -1.3234 2.5443 7 6 4.2920 -0.6127 3.7085 8 6 4.7572 -1.2615 4.8364 9 6 4.9885 -2.6267 4.8046 10 9 5.4380 -3.2617 5.9091 11 6 4.7588 -3.3402 3.6412 12 6 4.2974 -2.6882 2.5104 13 9 4.0722 -3.3834 1.3742 14 7 2.0197 -0.6925 -1.1995 15 6 2.0825 0.2227 -2.3470 16 6 2.5873 -0.5217 -3.5561 17 1 2.8370 -1.5697 -3.4797 18 6 2.7315 0.1354 -4.7596 19 7 3.1725 -0.5140 -5.8147 20 14 2.3003 1.9482 -4.8915 21 1 3.5011 2.7663 -4.5846 22 1 1.8365 2.2477 -6.2701 23 1 1.2207 2.2718 -3.9246 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7516 -1.7717 1.2055 28 1 1.6054 -0.2619 2.1370 29 1 3.8532 0.4368 1.3573 30 1 3.9995 -1.0729 0.4258 31 1 4.1080 0.4511 3.7353 32 1 4.9361 -0.7047 5.7443 33 1 4.9393 -4.4046 3.6154 34 1 2.9174 -1.1205 -1.0288 35 1 1.0871 0.6164 -2.5525 36 1 2.7589 1.0462 -2.1182 37 1 3.2736 -0.0518 -6.6615 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348369599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:43 Heat of formation + Delta-G solvation = -99.756041 kcal Electronic energy + Delta-G solvation = -19912.492992 eV Core-core repulsion = 16517.231477 eV Total energy + Delta-G solvation = -3395.261515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.02200 -50.00081 -40.11470 -38.45490 -35.27851 -34.06100 -32.10322 -31.73674 -29.25744 -28.40971 -25.16466 -24.17880 -23.28712 -22.33648 -21.21195 -19.19742 -18.90974 -18.25757 -17.17210 -16.95383 -16.79277 -16.54344 -16.31697 -16.28654 -15.69753 -15.37154 -14.92161 -14.83698 -14.60855 -14.33219 -13.88502 -13.60333 -13.46115 -13.17773 -13.02810 -12.74397 -12.57659 -12.47355 -12.29112 -12.07277 -11.85062 -11.67499 -11.45680 -11.34829 -10.81438 -10.06636 -9.58408 -9.08605 -8.29949 -6.34567 -0.07320 0.01328 1.33826 1.36748 1.48132 2.34141 2.35206 2.87417 3.03996 3.41782 3.53406 3.54545 3.59957 3.87732 4.07917 4.10534 4.20962 4.31403 4.57794 4.68255 4.76053 4.79564 4.83325 4.87477 4.95767 4.97708 5.02057 5.07053 5.12510 5.15994 5.31640 5.35717 5.42227 5.59955 5.78175 6.01620 6.60788 6.69652 6.81037 7.30710 8.87130 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.029415 B = 0.003742 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.678819 B = 7480.125259 C = 7825.128987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.075 3.925 3 H 0.042 0.958 4 C -0.101 4.101 5 C -0.085 4.085 6 C -0.122 4.122 7 C -0.052 4.052 8 C -0.150 4.150 9 C 0.111 3.889 10 F -0.138 7.138 11 C -0.197 4.197 12 C 0.107 3.893 13 F -0.143 7.143 14 N -0.690 5.690 15 C 0.177 3.823 16 C -0.529 4.529 17 H 0.032 0.968 18 C 0.006 3.994 19 N -0.949 5.949 20 Si 0.954 3.046 21 H -0.264 1.264 22 H -0.281 1.281 23 H -0.249 1.249 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.152 0.848 34 H 0.334 0.666 35 H 0.024 0.976 36 H -0.014 1.014 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 2.704 25.359 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 H 0.060 0.940 4 C -0.138 4.138 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.070 4.070 8 C -0.169 4.169 9 C 0.092 3.908 10 F -0.117 7.117 11 C -0.216 4.216 12 C 0.088 3.912 13 F -0.122 7.122 14 N -0.323 5.323 15 C 0.049 3.951 16 C -0.568 4.568 17 H 0.051 0.949 18 C -0.191 4.191 19 N -0.590 5.590 20 Si 0.776 3.224 21 H -0.189 1.189 22 H -0.207 1.207 23 H -0.173 1.173 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.192 0.808 32 H 0.188 0.812 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.042 0.958 36 H 0.003 0.997 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.840 2.411 25.014 25.144 hybrid contribution 0.880 0.204 -0.761 1.181 sum 1.720 2.615 24.253 24.455 Atomic orbital electron populations 1.21761 0.94393 1.01773 1.01333 1.21687 0.96353 0.95893 0.89562 0.94047 1.21651 0.93724 1.01009 0.97452 1.20618 0.96266 1.01334 0.94053 1.20134 1.02369 0.91639 0.98185 1.21143 0.94757 1.01783 0.89280 1.21522 1.01792 0.91940 1.01615 1.17453 0.99522 0.91395 0.82467 1.91516 1.86678 1.82509 1.50954 1.21124 1.06051 1.02536 0.91901 1.17513 1.01189 0.90144 0.82360 1.91533 1.92256 1.79347 1.49017 1.60482 1.33371 1.33985 1.04453 1.19753 0.95101 0.91087 0.89190 1.21383 1.43399 0.97192 0.94795 0.94920 1.25926 0.94460 1.03736 0.95011 1.70065 1.48140 1.39022 1.01731 0.85625 0.79789 0.78971 0.77975 1.18906 1.20683 1.17284 0.90026 0.94533 0.93006 0.92493 0.88460 0.88499 0.92534 0.80778 0.81162 0.83051 0.84674 0.95777 0.99659 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.42 71.98 0.68 -3.15 16 2 C 0.07 2.28 2.65 44.92 0.12 2.39 16 3 H 0.04 1.23 7.80 -2.39 -0.02 1.21 16 4 C -0.10 -2.39 4.79 30.59 0.15 -2.25 16 5 C -0.09 -1.95 4.94 29.85 0.15 -1.80 16 6 C -0.12 -2.47 5.14 -19.81 -0.10 -2.57 16 7 C -0.05 -0.71 9.68 22.26 0.22 -0.50 16 8 C -0.15 -1.98 10.02 22.32 0.22 -1.76 16 9 C 0.11 1.97 7.30 22.37 0.16 2.13 16 10 F -0.14 -2.57 17.27 44.97 0.78 -1.79 16 11 C -0.20 -4.00 10.01 22.36 0.22 -3.78 16 12 C 0.11 2.55 7.24 22.37 0.16 2.71 16 13 F -0.14 -4.22 16.57 44.97 0.74 -3.48 16 14 N -0.69 -28.48 6.30 -495.57 -3.12 -31.60 16 15 C 0.18 8.59 4.31 85.55 0.37 8.96 16 16 C -0.53 -31.50 9.87 25.60 0.25 -31.24 16 17 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 18 C 0.01 0.35 5.47 84.65 0.46 0.81 16 19 N -0.95 -60.40 13.96 21.45 0.30 -60.11 16 20 Si 0.95 44.43 27.47 68.60 1.88 46.31 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.16 7.45 -2.39 -0.02 1.14 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.54 8.14 -2.38 -0.02 1.53 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.10 1.84 8.05 -2.38 -0.02 1.83 16 30 H 0.06 1.63 6.08 -2.39 -0.01 1.61 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.33 13.81 6.46 -89.69 -0.58 13.23 16 35 H 0.02 1.18 6.49 -2.39 -0.02 1.17 16 36 H -0.01 -0.66 7.48 -2.39 -0.02 -0.68 16 37 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -69.68 316.07 4.08 -65.60 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.44 Total: 15.10 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.06 Total: -30.04 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -2.82 Total: -91.70 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 1.52 Total: -5.27 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -69.68 4.08 -65.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348369599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.156 kcal (2) G-P(sol) polarization free energy of solvation -69.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds