Wall clock time and date at job start Mon Mar 30 2020 01:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.38228 * 119.98715 * 264.72568 * 6 5 4 8 8 C 1.38184 * 120.05131 * 179.72735 * 7 6 5 9 9 C 1.38497 * 120.02236 * 0.54445 * 8 7 6 10 10 F 1.35102 * 120.01372 * 179.74953 * 9 8 7 11 11 C 1.38398 * 119.97518 * 359.72988 * 9 8 7 12 12 C 1.38442 * 119.95189 * 359.97438 * 11 9 8 13 13 F 1.35098 * 120.01728 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 15 15 C 1.46897 * 111.00133 * 275.00091 * 14 2 1 16 16 C 1.50705 * 109.47250 * 180.02562 * 15 14 2 17 17 H 1.07998 * 119.99737 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99980 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99929 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99997 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47328 * 89.99779 * 20 18 16 22 22 H 1.48501 * 109.47503 * 209.99599 * 20 18 16 23 23 H 1.48504 * 109.47055 * 329.99785 * 20 18 16 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 28 28 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 29 29 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 30 30 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 31 31 H 1.08000 * 119.97287 * 359.97438 * 7 6 5 32 32 H 1.07995 * 119.99129 * 180.25595 * 8 7 6 33 33 H 1.08007 * 120.02524 * 180.02562 * 11 9 8 34 34 H 1.00901 * 110.99931 * 151.04418 * 14 2 1 35 35 H 1.09003 * 109.46826 * 299.99875 * 15 14 2 36 36 H 1.08993 * 109.47326 * 59.99934 * 15 14 2 37 37 H 0.97000 * 119.99551 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 6 4.4987 -2.6336 -2.4586 8 6 4.9541 -3.2876 -3.5875 9 6 4.9893 -2.6271 -4.8043 10 9 5.4394 -3.2651 -5.9068 11 6 4.5627 -1.3133 -4.8904 12 6 4.1008 -0.6610 -3.7600 13 9 3.6846 0.6216 -3.8425 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5886 -0.5216 3.5557 17 1 2.8382 -1.5696 3.4793 18 6 2.7319 0.1352 4.7594 19 7 2.4275 1.4113 4.8526 20 14 3.3585 -0.7873 6.2580 21 1 4.8395 -0.6932 6.3137 22 1 2.7780 -0.1883 7.4866 23 1 2.9563 -2.2138 6.1650 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 3.8532 0.4369 -1.3574 30 1 3.9994 -1.0729 -0.4261 31 1 4.4761 -3.1479 -1.5092 32 1 5.2872 -4.3127 -3.5200 33 1 4.5894 -0.7975 -5.8390 34 1 2.9174 -1.1205 1.0287 35 1 2.7589 1.0461 2.1182 36 1 1.0872 0.6162 2.5525 37 1 2.5280 1.8733 5.6996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348369616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:46 Heat of formation + Delta-G solvation = -86.043963 kcal Electronic energy + Delta-G solvation = -19787.364005 eV Core-core repulsion = 16392.697091 eV Total energy + Delta-G solvation = -3394.666915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.22998 -49.13469 -39.27981 -36.99360 -33.62022 -32.44704 -31.06010 -30.18241 -28.20444 -26.03486 -24.09951 -23.40076 -21.83601 -21.35444 -19.74485 -18.40248 -17.42750 -16.52525 -16.15191 -16.12959 -15.64523 -15.48447 -15.04855 -14.74605 -14.55157 -14.16978 -14.08043 -13.60560 -12.97163 -12.69553 -12.41590 -12.20612 -12.17997 -11.71499 -11.63635 -11.54205 -11.30443 -10.97382 -10.87836 -10.68487 -10.54202 -10.17693 -9.80558 -9.30112 -9.13624 -8.74859 -8.48270 -7.27712 -6.03126 -4.05114 0.72568 0.77291 3.12818 3.31111 3.37493 3.41723 3.64570 4.20040 4.34901 4.42685 4.45726 4.60271 4.89722 5.11655 5.24534 5.29193 5.33197 5.39869 5.55653 5.63134 5.73780 5.79021 5.86966 5.93528 5.98580 6.09074 6.20460 6.31784 6.45513 6.55320 6.61589 6.79011 7.29874 7.43698 7.79487 8.14763 8.42533 8.63314 9.04577 9.59910 11.07957 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.003620 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.288384 B = 7733.621611 C = 8342.724751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.035 0.965 4 C -0.111 4.111 5 C -0.088 4.088 6 C -0.113 4.113 7 C -0.058 4.058 8 C -0.160 4.160 9 C 0.117 3.883 10 F -0.135 7.135 11 C -0.192 4.192 12 C 0.129 3.871 13 F -0.128 7.128 14 N -0.686 5.686 15 C 0.194 3.806 16 C -0.514 4.514 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.326 0.674 35 H -0.015 1.015 36 H 0.028 0.972 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -6.483 -18.970 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.030 4.030 3 H 0.053 0.947 4 C -0.149 4.149 5 C -0.125 4.125 6 C -0.114 4.114 7 C -0.076 4.076 8 C -0.179 4.179 9 C 0.098 3.902 10 F -0.114 7.114 11 C -0.211 4.211 12 C 0.110 3.890 13 F -0.106 7.106 14 N -0.318 5.318 15 C 0.067 3.933 16 C -0.553 4.553 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.003 0.997 36 H 0.046 0.954 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.268 -6.544 -18.711 20.090 hybrid contribution 1.138 0.353 0.363 1.246 sum 4.406 -6.191 -18.348 19.859 Atomic orbital electron populations 1.21736 0.95302 1.01646 1.00604 1.21464 0.95657 0.95810 0.90040 0.94697 1.21746 0.93022 1.01882 0.98235 1.20704 0.97012 1.00655 0.94120 1.20162 1.01193 0.95340 0.94668 1.20923 0.95051 0.92811 0.98862 1.21224 1.03806 1.01637 0.91256 1.17286 0.99136 0.90504 0.83291 1.91519 1.86659 1.81529 1.51683 1.20993 1.05593 0.94824 0.99740 1.17182 0.98789 0.79618 0.93455 1.91532 1.87509 1.34737 1.96842 1.60766 1.32308 1.34873 1.03875 1.19586 0.96474 0.90194 0.87026 1.21196 1.43251 0.96704 0.94127 0.92026 1.24992 0.95695 0.94900 0.99008 1.69967 1.48813 1.09044 1.25900 0.86502 0.78796 0.79997 0.82128 1.20753 1.21264 1.19771 0.92429 0.93794 0.92546 0.90995 0.91969 0.90467 0.89475 0.83461 0.84032 0.83661 0.85539 0.99715 0.95366 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.42 37.16 0.35 -1.86 16 2 C 0.08 1.39 2.65 -67.71 -0.18 1.21 16 3 H 0.04 0.65 7.80 -51.93 -0.40 0.25 16 4 C -0.11 -1.51 4.79 -26.73 -0.13 -1.64 16 5 C -0.09 -1.11 4.95 -27.88 -0.14 -1.25 16 6 C -0.11 -1.27 5.14 -104.55 -0.54 -1.81 16 7 C -0.06 -0.56 9.67 -39.60 -0.38 -0.94 16 8 C -0.16 -1.44 10.03 -39.51 -0.40 -1.83 16 9 C 0.12 1.17 7.30 -39.43 -0.29 0.88 16 10 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 11 C -0.19 -1.94 10.01 -39.45 -0.39 -2.33 16 12 C 0.13 1.48 7.24 -39.43 -0.29 1.19 16 13 F -0.13 -1.60 16.56 2.25 0.04 -1.56 16 14 N -0.69 -14.17 6.30 -107.99 -0.68 -14.85 16 15 C 0.19 5.02 5.24 -4.98 -0.03 5.00 16 16 C -0.51 -14.42 9.32 -34.44 -0.32 -14.74 16 17 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H 0.06 1.05 7.45 -51.93 -0.39 0.67 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.04 7.79 -51.93 -0.40 0.64 16 30 H 0.09 1.12 6.33 -51.93 -0.33 0.79 16 31 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.33 6.28 6.46 -39.29 -0.25 6.03 16 35 H -0.01 -0.41 8.06 -51.93 -0.42 -0.83 16 36 H 0.03 0.79 7.44 -51.93 -0.39 0.41 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -29.92 319.66 -7.98 -37.90 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.09 Total: 1.25 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.82 Total: -16.66 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.06 Total: -40.90 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.92 -7.98 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348369616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.144 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds