Wall clock time and date at job start Mon Mar 30 2020 01:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 C 1.38228 * 119.98715 * 264.72568 * 6 5 4 8 8 C 1.38184 * 120.05131 * 179.72735 * 7 6 5 9 9 C 1.38497 * 120.02236 * 0.54445 * 8 7 6 10 10 F 1.35102 * 120.01372 * 179.74953 * 9 8 7 11 11 C 1.38398 * 119.97518 * 359.72988 * 9 8 7 12 12 C 1.38442 * 119.95189 * 359.97438 * 11 9 8 13 13 F 1.35098 * 120.01728 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 15 15 C 1.46897 * 111.00133 * 275.00091 * 14 2 1 16 16 C 1.50705 * 109.47250 * 180.02562 * 15 14 2 17 17 H 1.07998 * 119.99737 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99980 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99929 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99997 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47328 * 89.99779 * 20 18 16 22 22 H 1.48501 * 109.47503 * 209.99599 * 20 18 16 23 23 H 1.48504 * 109.47055 * 329.99785 * 20 18 16 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 28 28 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 29 29 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 30 30 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 31 31 H 1.08000 * 119.97287 * 359.97438 * 7 6 5 32 32 H 1.07995 * 119.99129 * 180.25595 * 8 7 6 33 33 H 1.08007 * 120.02524 * 180.02562 * 11 9 8 34 34 H 1.00901 * 110.99931 * 151.04418 * 14 2 1 35 35 H 1.09003 * 109.46826 * 299.99875 * 15 14 2 36 36 H 1.08993 * 109.47326 * 59.99934 * 15 14 2 37 37 H 0.97000 * 119.99551 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 6 4.4987 -2.6336 -2.4586 8 6 4.9541 -3.2876 -3.5875 9 6 4.9893 -2.6271 -4.8043 10 9 5.4394 -3.2651 -5.9068 11 6 4.5627 -1.3133 -4.8904 12 6 4.1008 -0.6610 -3.7600 13 9 3.6846 0.6216 -3.8425 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5886 -0.5216 3.5557 17 1 2.8382 -1.5696 3.4793 18 6 2.7319 0.1352 4.7594 19 7 2.4275 1.4113 4.8526 20 14 3.3585 -0.7873 6.2580 21 1 4.8395 -0.6932 6.3137 22 1 2.7780 -0.1883 7.4866 23 1 2.9563 -2.2138 6.1650 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 3.8532 0.4369 -1.3574 30 1 3.9994 -1.0729 -0.4261 31 1 4.4761 -3.1479 -1.5092 32 1 5.2872 -4.3127 -3.5200 33 1 4.5894 -0.7975 -5.8390 34 1 2.9174 -1.1205 1.0287 35 1 2.7589 1.0461 2.1182 36 1 1.0872 0.6162 2.5525 37 1 2.5280 1.8733 5.6996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348369616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:45 Heat of formation + Delta-G solvation = -102.748489 kcal Electronic energy + Delta-G solvation = -19788.088368 eV Core-core repulsion = 16392.697091 eV Total energy + Delta-G solvation = -3395.391277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.03810 -50.00267 -40.12431 -38.42236 -35.31584 -33.98538 -31.95572 -31.65716 -29.27126 -28.02448 -25.23319 -24.18253 -23.70330 -22.36345 -21.17668 -19.21169 -18.53073 -18.25986 -17.13125 -16.95758 -16.75970 -16.69930 -16.33586 -16.15939 -15.72545 -15.42902 -14.98255 -14.85051 -14.25990 -14.24073 -13.74075 -13.53934 -13.44454 -13.15305 -12.98696 -12.75861 -12.62869 -12.43265 -12.37988 -12.11152 -12.07308 -11.72509 -11.46692 -11.17467 -10.64045 -10.06939 -9.59201 -9.06951 -8.20468 -6.31653 -0.07953 0.01057 1.42722 1.44494 1.56186 2.34652 2.41719 2.85432 3.13091 3.39837 3.52621 3.58657 3.61156 3.88226 4.06449 4.10213 4.18234 4.33174 4.53914 4.69382 4.74359 4.79806 4.87393 4.93075 4.95924 5.01964 5.05697 5.09875 5.20134 5.27601 5.32868 5.36140 5.44354 5.66189 5.77189 6.06775 6.51170 6.78738 6.95974 7.39766 8.91236 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.003620 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.288384 B = 7733.621611 C = 8342.724751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.077 3.923 3 H 0.016 0.984 4 C -0.097 4.097 5 C -0.083 4.083 6 C -0.121 4.121 7 C -0.057 4.057 8 C -0.151 4.151 9 C 0.112 3.888 10 F -0.137 7.137 11 C -0.191 4.191 12 C 0.113 3.887 13 F -0.139 7.139 14 N -0.680 5.680 15 C 0.210 3.790 16 C -0.533 4.533 17 H 0.067 0.933 18 C -0.001 4.001 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.262 1.262 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.336 0.664 35 H -0.044 1.044 36 H -0.003 1.003 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 -8.630 -19.508 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.033 4.033 3 H 0.034 0.966 4 C -0.135 4.135 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.074 4.074 8 C -0.169 4.169 9 C 0.093 3.907 10 F -0.116 7.116 11 C -0.211 4.211 12 C 0.093 3.907 13 F -0.118 7.118 14 N -0.313 5.313 15 C 0.082 3.918 16 C -0.572 4.572 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.577 5.577 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.186 1.186 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.176 0.824 34 H 0.155 0.845 35 H -0.026 1.026 36 H 0.016 0.984 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.964 -8.705 -19.278 21.521 hybrid contribution 0.915 1.028 0.447 1.447 sum 4.879 -7.677 -18.831 20.913 Atomic orbital electron populations 1.21714 0.94513 1.02110 1.00610 1.21588 0.96308 0.95101 0.90326 0.96556 1.21608 0.93664 1.01893 0.96335 1.20574 0.96381 1.00124 0.94976 1.20069 1.02261 0.96081 0.93798 1.21123 0.94360 0.92075 0.99892 1.21489 1.02417 1.02610 0.90399 1.17424 0.99168 0.90507 0.83640 1.91519 1.86682 1.81499 1.51864 1.21115 1.04999 0.95057 0.99900 1.17337 0.99873 0.79401 0.94063 1.91501 1.87821 1.35551 1.96926 1.60650 1.32906 1.33819 1.03960 1.19202 0.93742 0.90031 0.88827 1.21578 1.43382 0.97113 0.95086 0.91446 1.25975 0.95682 0.95741 1.02471 1.70107 1.49821 1.10830 1.26898 0.85328 0.78471 0.78841 0.77632 1.19649 1.21008 1.18647 0.95256 0.90979 0.91782 0.89928 0.90788 0.91870 0.89784 0.81754 0.81530 0.82422 0.84477 1.02616 0.98443 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 9.42 71.98 0.68 -3.60 16 2 C 0.08 2.66 2.65 44.92 0.12 2.78 16 3 H 0.02 0.63 7.80 -2.39 -0.02 0.61 16 4 C -0.10 -2.53 4.79 30.60 0.15 -2.38 16 5 C -0.08 -2.06 4.95 29.85 0.15 -1.91 16 6 C -0.12 -2.55 5.14 -19.82 -0.10 -2.66 16 7 C -0.06 -0.94 9.67 22.25 0.22 -0.73 16 8 C -0.15 -2.26 10.03 22.32 0.22 -2.04 16 9 C 0.11 1.98 7.30 22.37 0.16 2.14 16 10 F -0.14 -2.52 17.27 44.97 0.78 -1.74 16 11 C -0.19 -3.57 10.01 22.36 0.22 -3.34 16 12 C 0.11 2.46 7.24 22.37 0.16 2.62 16 13 F -0.14 -3.45 16.56 44.97 0.74 -2.71 16 14 N -0.68 -28.37 6.30 -495.57 -3.12 -31.49 16 15 C 0.21 11.26 5.24 85.56 0.45 11.71 16 16 C -0.53 -30.20 9.32 25.60 0.24 -29.96 16 17 H 0.07 3.66 7.81 -2.91 -0.02 3.63 16 18 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 19 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 20 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H 0.03 1.09 7.45 -2.39 -0.02 1.07 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.73 7.79 -2.39 -0.02 1.71 16 30 H 0.08 2.10 6.33 -2.39 -0.02 2.09 16 31 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.34 12.84 6.46 -89.69 -0.58 12.26 16 35 H -0.04 -2.55 8.06 -2.39 -0.02 -2.57 16 36 H 0.00 -0.15 7.44 -2.39 -0.02 -0.17 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -64.80 319.66 4.33 -60.47 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.49 Total: 13.09 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.13 Total: -26.96 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -2.84 Total: -88.14 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 1.52 Total: -4.45 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -64.80 4.33 -60.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348369616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.274 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds