Wall clock time and date at job start Mon Mar 30 2020 01:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46888 * 2 1 4 4 C 1.50695 * 109.47485 * 120.00184 * 2 1 3 5 5 C 1.38427 * 120.02356 * 343.06171 * 4 2 1 6 6 F 1.35099 * 120.01056 * 359.97438 * 5 4 2 7 7 C 1.38470 * 119.96993 * 179.69980 * 5 4 2 8 8 C 1.38208 * 120.03083 * 0.59719 * 7 5 4 9 9 C 1.38215 * 120.04614 * 359.67783 * 8 7 5 10 10 C 1.38412 * 120.02727 * 163.33496 * 4 2 1 11 11 F 1.35105 * 120.01307 * 359.97438 * 10 4 2 12 12 N 1.46900 * 109.46819 * 240.00367 * 2 1 3 13 13 C 1.46897 * 111.00040 * 305.80241 * 12 2 1 14 14 C 1.46902 * 111.00059 * 69.75934 * 12 2 1 15 15 C 1.53007 * 109.46876 * 169.99890 * 14 12 2 16 16 C 1.50706 * 109.46718 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99824 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99681 * 180.02562 * 16 15 14 19 19 N 1.31505 * 119.99772 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99909 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46891 * 90.00065 * 20 18 16 22 22 H 1.48495 * 109.47197 * 209.99993 * 20 18 16 23 23 H 1.48500 * 109.47278 * 330.00228 * 20 18 16 24 24 H 1.08996 * 109.46531 * 192.58358 * 1 2 3 25 25 H 1.09000 * 109.47134 * 312.57678 * 1 2 3 26 26 H 1.08996 * 109.47664 * 72.58007 * 1 2 3 27 27 H 1.08003 * 119.98338 * 180.27238 * 7 5 4 28 28 H 1.07995 * 119.97793 * 179.69681 * 8 7 5 29 29 H 1.08000 * 119.98797 * 179.97438 * 9 8 7 30 30 H 1.08999 * 109.47272 * 190.04904 * 13 12 2 31 31 H 1.09003 * 109.46990 * 310.04780 * 13 12 2 32 32 H 1.09002 * 109.47302 * 70.04715 * 13 12 2 33 33 H 1.08999 * 109.47621 * 49.99871 * 14 12 2 34 34 H 1.08997 * 109.46718 * 289.99618 * 14 12 2 35 35 H 1.08998 * 109.46705 * 299.99495 * 15 14 12 36 36 H 1.08999 * 109.47012 * 59.99608 * 15 14 12 37 37 H 0.97008 * 120.00128 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.1824 -0.9257 2.3015 6 9 -0.0980 -0.4984 2.2445 7 6 1.6435 -1.5841 3.4290 8 6 2.9552 -2.0153 3.4903 9 6 3.8063 -1.7959 2.4236 10 6 3.3457 -1.1432 1.2926 11 9 4.1778 -0.9293 0.2499 12 7 2.0196 -0.6924 -1.1995 13 6 1.4387 -2.0375 -1.3049 14 6 1.7478 0.0948 -2.4096 15 6 2.4831 -0.5273 -3.5985 16 6 2.2036 0.2800 -4.8401 17 1 1.5651 1.1493 -4.7866 18 6 2.7623 -0.0921 -6.0445 19 7 2.5189 0.6126 -7.1278 20 14 3.8662 -1.5962 -6.1370 21 1 3.0431 -2.7968 -6.4313 22 1 4.8700 -1.4079 -7.2149 23 1 4.5627 -1.7797 -4.8384 24 1 -0.3632 -1.0030 0.2239 25 1 -0.3633 0.6953 0.7567 26 1 -0.3634 0.3076 -0.9805 27 1 0.9793 -1.7560 4.2631 28 1 3.3152 -2.5244 4.3720 29 1 4.8312 -2.1329 2.4727 30 1 1.9470 -2.5921 -2.0937 31 1 1.5602 -2.5610 -0.3565 32 1 0.3779 -1.9576 -1.5425 33 1 2.0941 1.1178 -2.2631 34 1 0.6758 0.0988 -2.6071 35 1 3.5550 -0.5313 -3.4009 36 1 2.1368 -1.5503 -3.7450 37 1 2.9117 0.3507 -7.9752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357531261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:24 Heat of formation + Delta-G solvation = -65.734446 kcal Electronic energy + Delta-G solvation = -21013.011984 eV Core-core repulsion = 17619.225756 eV Total energy + Delta-G solvation = -3393.786228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.15745 -49.68969 -40.32939 -38.78273 -35.42510 -33.72044 -31.48769 -31.15896 -30.07024 -27.84166 -26.19392 -24.27036 -23.57723 -22.18400 -21.05061 -19.06055 -18.94306 -18.08233 -17.41034 -17.00938 -16.47617 -16.43175 -16.25191 -16.17764 -15.91408 -15.51683 -15.22439 -14.64997 -14.53651 -14.14894 -13.83773 -13.54624 -13.48095 -13.07083 -12.94652 -12.88544 -12.68659 -12.52892 -12.34808 -11.95367 -11.86193 -11.73214 -11.43809 -11.35215 -10.76910 -9.80759 -9.64040 -9.24434 -8.31467 -6.35428 0.03190 0.08615 1.33630 1.36536 1.50164 2.35213 2.44202 2.90980 3.04132 3.04851 3.42858 3.55992 3.83792 3.95850 4.07467 4.17004 4.29184 4.32179 4.34357 4.56346 4.57673 4.68086 4.82016 4.86868 4.94996 4.95816 5.02202 5.10126 5.15175 5.18267 5.27363 5.29300 5.44097 5.61137 5.87090 6.07382 6.14067 6.28261 6.71611 7.29314 8.85289 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.029794 B = 0.004985 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.545582 B = 5615.418285 C = 6219.924461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.119 3.881 3 H 0.085 0.915 4 C -0.166 4.166 5 C 0.118 3.882 6 F -0.133 7.133 7 C -0.161 4.161 8 C -0.050 4.050 9 C -0.169 4.169 10 C 0.129 3.871 11 F -0.132 7.132 12 N -0.537 5.537 13 C 0.030 3.970 14 C 0.085 3.915 15 C 0.003 3.997 16 C -0.532 4.532 17 H 0.033 0.967 18 C 0.009 3.991 19 N -0.949 5.949 20 Si 0.949 3.051 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.252 1.252 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.168 0.832 28 H 0.182 0.818 29 H 0.159 0.841 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -8.015 26.372 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.011 3.989 3 H 0.103 0.897 4 C -0.168 4.168 5 C 0.098 3.902 6 F -0.111 7.111 7 C -0.180 4.180 8 C -0.068 4.068 9 C -0.188 4.188 10 C 0.109 3.891 11 F -0.110 7.110 12 N -0.260 5.260 13 C -0.118 4.118 14 C -0.042 4.042 15 C -0.035 4.035 16 C -0.571 4.571 17 H 0.051 0.949 18 C -0.188 4.188 19 N -0.590 5.590 20 Si 0.773 3.227 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.175 1.175 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.186 0.814 28 H 0.199 0.801 29 H 0.177 0.823 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.335 -8.018 26.178 27.380 hybrid contribution -0.676 0.188 -1.328 1.502 sum -0.341 -7.830 24.850 26.057 Atomic orbital electron populations 1.22772 0.95427 1.03194 1.02191 1.20487 0.93937 0.97158 0.87356 0.89729 1.19915 0.93981 1.06020 0.96867 1.17404 0.78748 0.98930 0.95109 1.91493 1.35545 1.87634 1.96459 1.21523 0.98383 1.00527 0.97559 1.21285 0.91165 0.95906 0.98437 1.21580 1.03191 1.01561 0.92426 1.17589 0.87079 0.98814 0.85597 1.91576 1.70288 1.92494 1.56667 1.62242 1.58618 1.03273 1.01877 1.22325 0.97302 0.90300 1.01914 1.21822 0.97282 0.96396 0.88687 1.19397 0.96257 0.95624 0.92176 1.21393 1.29798 1.12428 0.93471 0.94906 1.25929 0.97702 1.00133 0.95023 1.70055 1.46668 1.41881 1.00399 0.85667 0.79052 0.79359 0.78656 1.18971 1.20675 1.17546 0.91738 0.89781 0.93689 0.81449 0.80074 0.82329 0.92084 0.91077 0.95287 0.92371 0.95687 0.96372 0.96459 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.91 6.64 71.98 0.48 -4.43 16 2 C 0.12 3.60 2.57 44.17 0.11 3.71 16 3 H 0.08 2.67 7.94 -2.39 -0.02 2.65 16 4 C -0.17 -4.24 4.25 -19.78 -0.08 -4.33 16 5 C 0.12 2.46 6.95 22.37 0.16 2.61 16 6 F -0.13 -2.92 12.71 44.97 0.57 -2.35 16 7 C -0.16 -2.21 10.02 22.32 0.22 -1.99 16 8 C -0.05 -0.56 10.04 22.26 0.22 -0.34 16 9 C -0.17 -2.83 10.03 22.32 0.22 -2.60 16 10 C 0.13 3.26 6.94 22.37 0.16 3.41 16 11 F -0.13 -4.25 15.69 44.97 0.71 -3.55 16 12 N -0.54 -19.26 3.23 -901.46 -2.91 -22.17 16 13 C 0.03 0.97 8.23 127.69 1.05 2.02 16 14 C 0.09 3.65 4.49 86.31 0.39 4.04 16 15 C 0.00 0.16 3.96 29.85 0.12 0.28 16 16 C -0.53 -31.96 9.66 25.60 0.25 -31.71 16 17 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 18 C 0.01 0.55 5.47 84.66 0.46 1.02 16 19 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 20 Si 0.95 46.10 27.47 68.60 1.88 47.99 16 21 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 24 H 0.06 1.72 6.27 -2.39 -0.01 1.70 16 25 H 0.08 2.09 6.58 -2.39 -0.02 2.07 16 26 H 0.04 1.37 6.46 -2.39 -0.02 1.36 16 27 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 28 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 29 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.06 2.12 6.77 -2.39 -0.02 2.10 16 31 H 0.07 2.03 6.91 -2.39 -0.02 2.02 16 32 H 0.03 0.92 7.04 -2.39 -0.02 0.91 16 33 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 34 H 0.02 1.08 6.74 -2.39 -0.02 1.06 16 35 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 36 H 0.02 0.84 6.11 -2.39 -0.01 0.82 16 37 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 Total: -1.00 -70.26 299.47 5.33 -64.94 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.02 Total: 4.08 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 3.76 Total: -28.31 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.61 Total: -82.79 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 1.28 Total: -5.90 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.88 Total: 47.99 kcal Total: -70.26 5.33 -64.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357531261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.798 kcal (2) G-P(sol) polarization free energy of solvation -70.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds