Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34223 * 116.99916 * 2 1 4 4 O 1.20826 * 120.00414 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99722 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.64224 * 33.31222 * 5 3 2 7 7 C 1.55167 * 110.71921 * 156.45573 * 5 3 2 8 8 C 1.54910 * 101.57965 * 153.86271 * 7 5 3 9 9 N 1.47424 * 104.83506 * 322.98703 * 8 7 5 10 10 C 1.34771 * 125.64913 * 204.09231 * 9 8 7 11 11 O 1.21280 * 120.00023 * 180.02562 * 10 9 8 12 12 C 1.50698 * 119.99807 * 0.30290 * 10 9 8 13 13 C 1.53004 * 109.47048 * 179.72625 * 12 10 9 14 14 C 1.50694 * 109.47395 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99999 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00540 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99368 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00458 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46998 * 89.99909 * 18 16 14 20 20 H 1.48499 * 109.47264 * 209.99854 * 18 16 14 21 21 H 1.48497 * 109.46819 * 329.99992 * 18 16 14 22 22 C 1.47023 * 108.69914 * 24.35882 * 9 8 7 23 23 H 1.09001 * 109.88290 * 118.13022 * 22 9 8 24 24 C 1.53000 * 109.88226 * 239.29161 * 22 9 8 25 25 H 1.08998 * 109.46842 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46581 * 300.00008 * 1 2 3 27 27 H 1.08998 * 109.46722 * 60.00208 * 1 2 3 28 28 H 1.08996 * 111.00279 * 35.78743 * 7 5 3 29 29 H 1.09002 * 111.03048 * 271.95203 * 7 5 3 30 30 H 1.09001 * 110.36158 * 204.14635 * 8 7 5 31 31 H 1.09000 * 110.45600 * 81.87682 * 8 7 5 32 32 H 1.09002 * 109.47017 * 299.72188 * 12 10 9 33 33 H 1.08995 * 109.47578 * 59.72205 * 12 10 9 34 34 H 1.09002 * 109.46854 * 299.99662 * 13 12 10 35 35 H 1.08995 * 109.47274 * 59.99394 * 13 12 10 36 36 H 0.97006 * 119.99646 * 180.02562 * 17 16 14 37 37 H 1.09009 * 109.46632 * 61.81130 * 24 22 9 38 38 H 1.08997 * 109.47384 * 181.80917 * 24 22 9 39 39 H 1.09001 * 109.47632 * 301.81747 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9945 0.4437 -0.5611 7 6 4.0448 2.6323 -0.5802 8 6 5.4226 2.7962 0.1085 9 7 5.2324 2.2556 1.4668 10 6 5.9646 2.5797 2.5508 11 8 5.7183 2.0700 3.6234 12 6 7.0854 3.5800 2.4315 13 6 7.7459 3.7713 3.7983 14 6 8.8663 4.7720 3.6791 15 1 9.0857 5.2259 2.7240 16 6 9.6114 5.1083 4.7894 17 7 9.3439 4.5560 5.9526 18 14 11.0006 6.3483 4.6416 19 1 10.4733 7.7142 4.8891 20 1 12.0524 6.0349 5.6420 21 1 11.5805 6.2814 3.2761 22 6 4.1157 1.2996 1.4415 23 1 4.4703 0.3079 1.7223 24 6 3.0186 1.7554 2.4056 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.3680 3.4383 -0.2969 29 1 4.1533 2.5786 -1.6635 30 1 5.7006 3.8491 0.1547 31 1 6.1846 2.2264 -0.4234 32 1 7.8246 3.2141 1.7188 33 1 6.6865 4.5330 2.0841 34 1 7.0067 4.1372 4.5109 35 1 8.1448 2.8183 4.1456 36 1 9.8678 4.7928 6.7339 37 1 2.6346 2.7246 2.0870 38 1 2.2088 1.0259 2.4057 39 1 3.4309 1.8407 3.4111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360471356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = -129.556001 kcal Electronic energy + Delta-G solvation = -20905.571045 eV Core-core repulsion = 17620.104823 eV Total energy + Delta-G solvation = -3285.466223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.20694 -39.62653 -37.47199 -36.47597 -33.50532 -32.33651 -31.31391 -30.65678 -28.34907 -26.34283 -25.78663 -23.40901 -22.75007 -21.26346 -19.91530 -18.72331 -17.79482 -17.13802 -16.90558 -16.57810 -15.92752 -15.56200 -15.11858 -14.42278 -14.36646 -13.93023 -13.56021 -13.41650 -13.15346 -12.63683 -12.59746 -12.33104 -12.24123 -12.09744 -11.96326 -11.67439 -11.15181 -11.14278 -11.04347 -11.00059 -10.91819 -10.61855 -10.57890 -9.94822 -9.64459 -9.16763 -9.00696 -8.48636 -8.31016 -5.95454 -3.99859 1.89142 2.35632 3.18788 3.23642 3.33976 3.40158 3.42723 4.09009 4.22746 4.47998 4.51224 4.79483 4.82022 4.88130 4.90474 5.10561 5.20541 5.23005 5.37564 5.39544 5.44240 5.52419 5.60407 5.65533 5.91796 5.97740 6.07647 6.19485 6.23562 6.32823 6.55010 6.88903 7.46596 7.74935 7.80133 7.86579 8.07645 8.38689 8.71851 9.08454 9.63633 11.15515 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047792 B = 0.003508 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.728870 B = 7979.838983 C = 8301.793858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.479 3.521 4 O -0.500 6.500 5 C -0.097 4.097 6 H 0.117 0.883 7 C -0.120 4.120 8 C 0.103 3.897 9 N -0.627 5.627 10 C 0.529 3.471 11 O -0.528 6.528 12 C -0.124 4.124 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.153 3.847 23 H 0.085 0.915 24 C -0.175 4.175 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.077 -8.539 -16.540 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.321 3.679 4 O -0.387 6.387 5 C -0.117 4.117 6 H 0.135 0.865 7 C -0.158 4.158 8 C -0.021 4.021 9 N -0.365 5.365 10 C 0.320 3.680 11 O -0.402 6.402 12 C -0.164 4.164 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.049 3.951 23 H 0.103 0.897 24 C -0.233 4.233 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.319 -8.500 -15.660 23.498 hybrid contribution 0.469 0.653 -0.121 0.813 sum -14.851 -7.847 -15.780 23.046 Atomic orbital electron populations 1.23286 0.76230 1.03761 1.02639 1.86527 1.23514 1.33399 1.84052 1.23224 0.91394 0.81422 0.71825 1.90672 1.66867 1.36262 1.44907 1.22188 0.87938 1.02074 0.99464 0.86503 1.22874 0.97003 0.95303 1.00572 1.22300 0.96420 1.00683 0.82659 1.48811 1.33579 1.44628 1.09473 1.21352 0.82423 0.82509 0.81684 1.90665 1.69007 1.53840 1.26731 1.21870 0.94128 0.95902 1.04480 1.18914 0.94913 0.97480 0.88772 1.21208 1.15814 1.24485 0.94987 0.92600 1.25026 0.97546 0.96428 0.95393 1.70003 1.40310 1.42912 0.99594 0.86587 0.81965 0.81571 0.77805 1.20680 1.21228 1.19877 1.21214 0.87891 0.94489 0.91541 0.89657 1.22321 0.97394 1.01537 1.02003 0.88033 0.91769 0.91863 0.88697 0.89123 0.89463 0.90901 0.90201 0.90223 0.95818 0.95779 0.92952 0.91675 0.92571 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.52 10.57 -39.24 -0.41 -3.93 16 3 C 0.48 5.27 5.09 36.01 0.18 5.45 16 4 O -0.50 -6.65 14.75 -18.75 -0.28 -6.92 16 5 C -0.10 -0.95 3.37 -89.92 -0.30 -1.25 16 6 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.12 -1.09 6.39 -24.58 -0.16 -1.25 16 8 C 0.10 1.09 6.69 -2.53 -0.02 1.07 16 9 N -0.63 -9.30 3.08 -163.01 -0.50 -9.80 16 10 C 0.53 10.38 7.63 -10.99 -0.08 10.30 16 11 O -0.53 -12.47 14.82 5.56 0.08 -12.38 16 12 C -0.12 -2.53 4.65 -27.88 -0.13 -2.66 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.15 1.99 3.44 -66.95 -0.23 1.76 16 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 24 C -0.17 -2.49 8.11 37.16 0.30 -2.19 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 27 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.09 1.02 7.22 -51.93 -0.37 0.64 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.90 7.47 -51.93 -0.39 0.51 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.50 7.84 -51.93 -0.41 1.09 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.06 0.97 7.44 -51.92 -0.39 0.58 16 38 H 0.06 0.71 7.25 -51.93 -0.38 0.33 16 39 H 0.08 1.44 6.64 -51.93 -0.34 1.10 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -35.13 323.36 -6.46 -41.60 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.04 Total: -3.07 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 0.10 Total: -0.26 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.23 Total: -36.57 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.61 Total: -23.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.13 -6.46 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360471356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.959 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds