Wall clock time and date at job start Mon Mar 30 2020 01:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34223 * 116.99916 * 2 1 4 4 O 1.20826 * 120.00414 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99722 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.64224 * 33.31222 * 5 3 2 7 7 C 1.55167 * 110.71921 * 156.45573 * 5 3 2 8 8 C 1.54910 * 101.57965 * 153.86271 * 7 5 3 9 9 N 1.47424 * 104.83506 * 322.98703 * 8 7 5 10 10 C 1.34771 * 125.64913 * 204.09231 * 9 8 7 11 11 O 1.21280 * 120.00023 * 180.02562 * 10 9 8 12 12 C 1.50698 * 119.99807 * 0.30290 * 10 9 8 13 13 C 1.53004 * 109.47048 * 179.72625 * 12 10 9 14 14 C 1.50694 * 109.47395 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99999 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00540 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99368 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00458 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46998 * 89.99909 * 18 16 14 20 20 H 1.48499 * 109.47264 * 209.99854 * 18 16 14 21 21 H 1.48497 * 109.46819 * 329.99992 * 18 16 14 22 22 C 1.47023 * 108.69914 * 24.35882 * 9 8 7 23 23 H 1.09001 * 109.88290 * 118.13022 * 22 9 8 24 24 C 1.53000 * 109.88226 * 239.29161 * 22 9 8 25 25 H 1.08998 * 109.46842 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46581 * 300.00008 * 1 2 3 27 27 H 1.08998 * 109.46722 * 60.00208 * 1 2 3 28 28 H 1.08996 * 111.00279 * 35.78743 * 7 5 3 29 29 H 1.09002 * 111.03048 * 271.95203 * 7 5 3 30 30 H 1.09001 * 110.36158 * 204.14635 * 8 7 5 31 31 H 1.09000 * 110.45600 * 81.87682 * 8 7 5 32 32 H 1.09002 * 109.47017 * 299.72188 * 12 10 9 33 33 H 1.08995 * 109.47578 * 59.72205 * 12 10 9 34 34 H 1.09002 * 109.46854 * 299.99662 * 13 12 10 35 35 H 1.08995 * 109.47274 * 59.99394 * 13 12 10 36 36 H 0.97006 * 119.99646 * 180.02562 * 17 16 14 37 37 H 1.09009 * 109.46632 * 61.81130 * 24 22 9 38 38 H 1.08997 * 109.47384 * 181.80917 * 24 22 9 39 39 H 1.09001 * 109.47632 * 301.81747 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9945 0.4437 -0.5611 7 6 4.0448 2.6323 -0.5802 8 6 5.4226 2.7962 0.1085 9 7 5.2324 2.2556 1.4668 10 6 5.9646 2.5797 2.5508 11 8 5.7183 2.0700 3.6234 12 6 7.0854 3.5800 2.4315 13 6 7.7459 3.7713 3.7983 14 6 8.8663 4.7720 3.6791 15 1 9.0857 5.2259 2.7240 16 6 9.6114 5.1083 4.7894 17 7 9.3439 4.5560 5.9526 18 14 11.0006 6.3483 4.6416 19 1 10.4733 7.7142 4.8891 20 1 12.0524 6.0349 5.6420 21 1 11.5805 6.2814 3.2761 22 6 4.1157 1.2996 1.4415 23 1 4.4703 0.3079 1.7223 24 6 3.0186 1.7554 2.4056 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.3680 3.4383 -0.2969 29 1 4.1533 2.5786 -1.6635 30 1 5.7006 3.8491 0.1547 31 1 6.1846 2.2264 -0.4234 32 1 7.8246 3.2141 1.7188 33 1 6.6865 4.5330 2.0841 34 1 7.0067 4.1372 4.5109 35 1 8.1448 2.8183 4.1456 36 1 9.8678 4.7928 6.7339 37 1 2.6346 2.7246 2.0870 38 1 2.2088 1.0259 2.4057 39 1 3.4309 1.8407 3.4111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360471356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:58 Heat of formation + Delta-G solvation = -152.918937 kcal Electronic energy + Delta-G solvation = -20906.584138 eV Core-core repulsion = 17620.104823 eV Total energy + Delta-G solvation = -3286.479315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12512 -40.83670 -38.68221 -37.39918 -35.58514 -33.72084 -32.55924 -32.21485 -29.12727 -27.76597 -27.17690 -24.88192 -23.59074 -22.94016 -20.86609 -20.04562 -18.86810 -18.60140 -17.82993 -17.69664 -17.36470 -16.77894 -16.52080 -16.35515 -15.67575 -14.78730 -14.76905 -14.51463 -14.25574 -14.04624 -13.98380 -13.67623 -13.35393 -13.23837 -13.11423 -12.95839 -12.81521 -12.61647 -12.46423 -12.08312 -11.92992 -11.82451 -11.79450 -11.60622 -11.50358 -11.29311 -10.69109 -10.56216 -9.71105 -8.17361 -6.31468 1.02845 1.42847 1.45760 1.56391 1.57973 1.67912 2.06857 2.44056 3.15774 3.23266 3.35220 3.70655 3.92034 4.03498 4.11270 4.18816 4.27045 4.30324 4.33193 4.39140 4.47031 4.51087 4.64451 4.71406 4.73892 4.86173 4.89050 5.05566 5.09204 5.19054 5.34306 5.40817 5.51245 5.63068 5.85499 6.17768 6.46390 6.66236 6.87091 7.23474 7.38880 8.95435 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047792 B = 0.003508 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.728870 B = 7979.838983 C = 8301.793858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.480 3.520 4 O -0.527 6.527 5 C -0.087 4.087 6 H 0.153 0.847 7 C -0.110 4.110 8 C 0.093 3.907 9 N -0.620 5.620 10 C 0.526 3.474 11 O -0.583 6.583 12 C -0.111 4.111 13 C 0.043 3.957 14 C -0.542 4.542 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.253 1.253 22 C 0.146 3.854 23 H 0.087 0.913 24 C -0.166 4.166 25 H 0.131 0.869 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.129 0.871 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.101 0.899 34 H -0.021 1.021 35 H -0.017 1.017 36 H 0.262 0.738 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -8.345 -20.037 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.323 3.677 4 O -0.416 6.416 5 C -0.106 4.106 6 H 0.170 0.830 7 C -0.148 4.148 8 C -0.029 4.029 9 N -0.355 5.355 10 C 0.317 3.683 11 O -0.463 6.463 12 C -0.151 4.151 13 C 0.005 3.995 14 C -0.579 4.579 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.177 1.177 22 C 0.042 3.958 23 H 0.104 0.896 24 C -0.224 4.224 25 H 0.149 0.851 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.147 0.853 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.119 0.881 34 H -0.002 1.002 35 H 0.002 0.998 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.926 -8.315 -19.241 25.732 hybrid contribution 0.215 0.526 0.953 1.109 sum -14.711 -7.789 -18.288 24.729 Atomic orbital electron populations 1.23562 0.74774 1.05740 1.02538 1.86520 1.24984 1.32664 1.83552 1.23420 0.91814 0.81340 0.71094 1.90670 1.67574 1.37200 1.46162 1.22210 0.87271 1.04010 0.97108 0.82960 1.22881 0.95265 0.94081 1.02591 1.22720 0.98386 1.01456 0.80289 1.48675 1.32676 1.44087 1.10016 1.21089 0.82803 0.82271 0.82102 1.90647 1.70620 1.55861 1.29171 1.21605 0.94963 0.97619 1.00862 1.18690 0.94123 0.95073 0.91590 1.21705 1.15859 1.24462 0.95921 0.90467 1.26154 1.00771 0.98740 0.94859 1.70188 1.41985 1.44957 1.00727 0.85309 0.77853 0.78374 0.78640 1.19824 1.21229 1.17687 1.21356 0.86867 0.93845 0.93700 0.89550 1.22204 0.98200 1.01595 1.00428 0.85092 0.92500 0.91393 0.90547 0.85269 0.88890 0.87846 0.87547 0.88121 1.00225 0.99833 0.92886 0.92586 0.91136 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.26 10.57 -51.34 -0.54 -6.81 16 3 C 0.48 9.54 5.09 71.24 0.36 9.91 16 4 O -0.53 -13.33 14.75 21.96 0.32 -13.00 16 5 C -0.09 -1.43 3.37 -10.34 -0.03 -1.47 16 6 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 7 C -0.11 -1.62 6.39 31.99 0.20 -1.41 16 8 C 0.09 1.65 6.69 86.86 0.58 2.24 16 9 N -0.62 -17.67 3.08 -788.04 -2.43 -20.09 16 10 C 0.53 21.04 7.63 87.66 0.67 21.71 16 11 O -0.58 -29.27 14.82 -3.03 -0.04 -29.32 16 12 C -0.11 -4.51 4.65 29.85 0.14 -4.38 16 13 C 0.04 2.42 4.26 29.85 0.13 2.54 16 14 C -0.54 -30.93 9.11 25.60 0.23 -30.69 16 15 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 16 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 17 N -0.94 -60.05 13.29 21.45 0.28 -59.77 16 18 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 22 C 0.15 3.65 3.44 45.34 0.16 3.80 16 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 24 C -0.17 -4.86 8.11 71.98 0.58 -4.28 16 25 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 27 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 28 H 0.08 1.46 7.22 -2.39 -0.02 1.44 16 29 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.60 7.47 -2.39 -0.02 1.59 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 33 H 0.10 3.65 7.84 -2.39 -0.02 3.63 16 34 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 35 H -0.02 -1.07 8.10 -2.39 -0.02 -1.08 16 36 H 0.26 15.72 8.31 -92.70 -0.77 14.94 16 37 H 0.06 1.71 7.44 -2.38 -0.02 1.69 16 38 H 0.07 1.79 7.25 -2.39 -0.02 1.78 16 39 H 0.05 1.78 6.64 -2.39 -0.02 1.77 16 Total: -1.00 -81.54 323.36 5.33 -76.21 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.03 Total: 6.87 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 4.68 Total: -0.50 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.14 Total: -79.86 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.26 Total: -49.13 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -81.54 5.33 -76.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360471356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.713 kcal (2) G-P(sol) polarization free energy of solvation -81.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds