Wall clock time and date at job start Mon Mar 30 2020 01:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99779 * 2 1 4 4 O 1.20823 * 120.00380 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99830 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.88642 * 62.42804 * 5 3 2 7 7 C 1.55160 * 111.00118 * 298.54420 * 5 3 2 8 8 C 1.54330 * 102.94186 * 206.42230 * 7 5 3 9 9 N 1.47029 * 107.26628 * 22.19822 * 8 7 5 10 10 C 1.34779 * 125.64561 * 181.02220 * 9 8 7 11 11 O 1.21273 * 120.00093 * 180.02562 * 10 9 8 12 12 C 1.50706 * 119.99767 * 0.02562 * 10 9 8 13 13 C 1.53000 * 109.46735 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99923 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00006 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47093 * 90.00088 * 18 16 14 20 20 H 1.48495 * 109.46891 * 210.00496 * 18 16 14 21 21 H 1.48504 * 109.47189 * 330.00185 * 18 16 14 22 22 C 1.47423 * 108.70620 * 1.28516 * 9 8 7 23 23 H 1.09001 * 110.36901 * 94.48270 * 22 9 8 24 24 C 1.52998 * 110.36433 * 216.80674 * 22 9 8 25 25 H 1.08999 * 109.47383 * 59.99603 * 1 2 3 26 26 H 1.08995 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47112 * 299.99800 * 1 2 3 28 28 H 1.08997 * 110.71548 * 88.06492 * 7 5 3 29 29 H 1.08995 * 110.87446 * 324.86096 * 7 5 3 30 30 H 1.08999 * 109.88633 * 262.78400 * 8 7 5 31 31 H 1.08994 * 110.00939 * 141.67979 * 8 7 5 32 32 H 1.09001 * 109.46797 * 60.00350 * 12 10 9 33 33 H 1.08992 * 109.47518 * 300.00347 * 12 10 9 34 34 H 1.09002 * 109.47398 * 300.00410 * 13 12 10 35 35 H 1.09001 * 109.47194 * 60.00591 * 13 12 10 36 36 H 0.97000 * 119.99684 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47533 * 58.54808 * 24 22 9 38 38 H 1.09001 * 109.46849 * 178.54931 * 24 22 9 39 39 H 1.08997 * 109.47008 * 298.54425 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9787 0.8247 -0.9036 7 6 4.1584 0.6126 1.2715 8 6 5.5032 1.3484 1.4503 9 7 5.3951 2.6330 0.7434 10 6 6.3684 3.5602 0.6460 11 8 6.1673 4.5887 0.0356 12 6 7.7067 3.3189 1.2956 13 6 8.6226 4.5168 1.0366 14 6 9.9611 4.2753 1.6857 15 1 10.1406 3.3589 2.2282 16 6 10.9565 5.2242 1.5868 17 7 12.1246 5.0132 2.1528 18 14 10.6462 6.8090 0.6478 19 1 10.1029 7.8348 1.5739 20 1 11.9214 7.2955 0.0630 21 1 9.6674 6.5562 -0.4401 22 6 4.0438 2.7417 0.1642 23 1 3.3835 3.2843 0.8408 24 6 4.1024 3.4381 -1.1969 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.3204 -0.4533 1.1114 29 1 3.5109 0.7777 2.1326 30 1 6.3103 0.7554 1.0202 31 1 5.6949 1.5229 2.5090 32 1 8.1571 2.4193 0.8763 33 1 7.5715 3.1909 2.3695 34 1 8.7578 4.6453 -0.0373 35 1 8.1720 5.4162 1.4563 36 1 12.8248 5.6810 2.0836 37 1 4.7540 2.8753 -1.8652 38 1 3.1003 3.4876 -1.6230 39 1 4.4944 4.4474 -1.0720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360471357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:00 Heat of formation + Delta-G solvation = -125.787507 kcal Electronic energy + Delta-G solvation = -20837.613990 eV Core-core repulsion = 17552.311182 eV Total energy + Delta-G solvation = -3285.302808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13705 -39.77272 -37.48958 -36.62637 -33.55968 -32.33698 -31.60691 -30.89541 -28.42358 -26.49474 -25.94888 -23.20942 -22.66915 -21.08163 -20.22819 -18.78511 -17.95779 -17.26252 -17.08524 -16.57193 -15.96476 -15.63823 -15.04612 -14.44372 -14.14990 -14.10098 -13.82459 -13.47378 -13.29208 -12.93290 -12.67265 -12.51878 -12.36299 -12.17007 -11.90479 -11.67302 -11.38428 -11.27759 -11.16650 -11.01486 -10.92313 -10.69059 -10.13425 -10.02026 -9.75901 -9.18552 -9.05168 -8.54267 -8.49172 -6.02511 -4.01227 1.84419 2.24523 3.08038 3.18654 3.38954 3.45511 3.56476 3.97952 4.15317 4.45094 4.51726 4.72272 4.74986 4.81344 4.92670 4.96772 5.15166 5.20294 5.32448 5.33135 5.43763 5.54456 5.58168 5.73371 5.77432 5.97879 6.03292 6.08069 6.13252 6.33013 6.59428 6.69125 7.36981 7.38511 7.44049 7.69969 7.81029 8.49463 8.62028 9.00413 9.60647 11.10305 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046493 B = 0.003681 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.098615 B = 7604.864511 C = 8082.533655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.474 3.526 4 O -0.499 6.499 5 C -0.099 4.099 6 H 0.125 0.875 7 C -0.117 4.117 8 C 0.101 3.899 9 N -0.628 5.628 10 C 0.530 3.470 11 O -0.531 6.531 12 C -0.116 4.116 13 C 0.001 3.999 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C 0.154 3.846 23 H 0.084 0.916 24 C -0.165 4.165 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.263 0.737 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.986 -13.677 -3.463 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.385 6.385 5 C -0.118 4.118 6 H 0.143 0.857 7 C -0.155 4.155 8 C -0.022 4.022 9 N -0.366 5.366 10 C 0.321 3.679 11 O -0.407 6.407 12 C -0.156 4.156 13 C -0.037 4.037 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 C 0.050 3.950 23 H 0.102 0.898 24 C -0.222 4.222 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.060 -12.663 -3.771 25.715 hybrid contribution -0.335 0.702 -0.376 0.864 sum -22.395 -11.961 -4.146 25.726 Atomic orbital electron populations 1.23290 0.76179 1.03768 1.02679 1.86511 1.23503 1.33256 1.84078 1.23341 0.91337 0.81437 0.72245 1.90699 1.66940 1.36275 1.44622 1.22378 0.87535 0.99419 1.02512 0.85727 1.22636 0.96253 1.00731 0.95909 1.22018 0.97353 0.84673 0.98135 1.48760 1.12991 1.19556 1.55278 1.21272 0.85410 0.81628 0.79584 1.90602 1.81290 1.26525 1.42247 1.21669 0.90220 1.03116 1.00603 1.19385 0.94068 0.92507 0.97713 1.21102 0.95386 1.05627 1.34112 0.90942 1.24969 0.94882 0.98337 0.95042 1.69912 1.04060 1.35538 1.44763 0.86797 0.77657 0.83841 0.81266 1.20244 1.21469 1.18502 1.21640 0.84396 0.92079 0.96867 0.89802 1.22184 1.01654 1.03901 0.94500 0.91824 0.87986 0.91807 0.88503 0.90047 0.90465 0.90496 0.89613 0.89670 0.95786 0.96245 0.92723 0.92629 0.92150 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.11 10.55 -39.26 -0.41 -3.53 16 3 C 0.47 4.94 7.27 36.01 0.26 5.20 16 4 O -0.50 -6.61 15.36 -18.75 -0.29 -6.89 16 5 C -0.10 -0.94 2.97 -89.50 -0.27 -1.21 16 6 H 0.12 1.03 8.07 -51.93 -0.42 0.61 16 7 C -0.12 -0.90 6.39 -24.89 -0.16 -1.06 16 8 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 9 N -0.63 -8.90 3.24 -162.91 -0.53 -9.43 16 10 C 0.53 9.80 7.63 -10.98 -0.08 9.72 16 11 O -0.53 -11.67 13.63 5.56 0.08 -11.59 16 12 C -0.12 -2.26 4.83 -27.88 -0.13 -2.39 16 13 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 14 C -0.52 -14.97 9.66 -34.44 -0.33 -15.31 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 18 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 22 C 0.15 2.00 2.83 -66.30 -0.19 1.82 16 23 H 0.08 1.19 7.53 -51.93 -0.39 0.80 16 24 C -0.16 -2.31 8.71 37.16 0.32 -1.99 16 25 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 34 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 35 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.77 7.95 -51.93 -0.41 0.36 16 39 H 0.09 1.62 5.89 -51.93 -0.31 1.31 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -35.01 322.81 -6.01 -41.01 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.10 Total: -4.11 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 0.28 Total: -1.07 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.25 Total: -36.68 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.63 Total: -22.01 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.01 -6.01 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360471357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.776 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds