Wall clock time and date at job start Mon Mar 30 2020 01:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99779 * 2 1 4 4 O 1.20823 * 120.00380 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99830 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.88642 * 62.42804 * 5 3 2 7 7 C 1.55160 * 111.00118 * 298.54420 * 5 3 2 8 8 C 1.54330 * 102.94186 * 206.42230 * 7 5 3 9 9 N 1.47029 * 107.26628 * 22.19822 * 8 7 5 10 10 C 1.34779 * 125.64561 * 181.02220 * 9 8 7 11 11 O 1.21273 * 120.00093 * 180.02562 * 10 9 8 12 12 C 1.50706 * 119.99767 * 0.02562 * 10 9 8 13 13 C 1.53000 * 109.46735 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99923 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00006 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47093 * 90.00088 * 18 16 14 20 20 H 1.48495 * 109.46891 * 210.00496 * 18 16 14 21 21 H 1.48504 * 109.47189 * 330.00185 * 18 16 14 22 22 C 1.47423 * 108.70620 * 1.28516 * 9 8 7 23 23 H 1.09001 * 110.36901 * 94.48270 * 22 9 8 24 24 C 1.52998 * 110.36433 * 216.80674 * 22 9 8 25 25 H 1.08999 * 109.47383 * 59.99603 * 1 2 3 26 26 H 1.08995 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47112 * 299.99800 * 1 2 3 28 28 H 1.08997 * 110.71548 * 88.06492 * 7 5 3 29 29 H 1.08995 * 110.87446 * 324.86096 * 7 5 3 30 30 H 1.08999 * 109.88633 * 262.78400 * 8 7 5 31 31 H 1.08994 * 110.00939 * 141.67979 * 8 7 5 32 32 H 1.09001 * 109.46797 * 60.00350 * 12 10 9 33 33 H 1.08992 * 109.47518 * 300.00347 * 12 10 9 34 34 H 1.09002 * 109.47398 * 300.00410 * 13 12 10 35 35 H 1.09001 * 109.47194 * 60.00591 * 13 12 10 36 36 H 0.97000 * 119.99684 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47533 * 58.54808 * 24 22 9 38 38 H 1.09001 * 109.46849 * 178.54931 * 24 22 9 39 39 H 1.08997 * 109.47008 * 298.54425 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9787 0.8247 -0.9036 7 6 4.1584 0.6126 1.2715 8 6 5.5032 1.3484 1.4503 9 7 5.3951 2.6330 0.7434 10 6 6.3684 3.5602 0.6460 11 8 6.1673 4.5887 0.0356 12 6 7.7067 3.3189 1.2956 13 6 8.6226 4.5168 1.0366 14 6 9.9611 4.2753 1.6857 15 1 10.1406 3.3589 2.2282 16 6 10.9565 5.2242 1.5868 17 7 12.1246 5.0132 2.1528 18 14 10.6462 6.8090 0.6478 19 1 10.1029 7.8348 1.5739 20 1 11.9214 7.2955 0.0630 21 1 9.6674 6.5562 -0.4401 22 6 4.0438 2.7417 0.1642 23 1 3.3835 3.2843 0.8408 24 6 4.1024 3.4381 -1.1969 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.3204 -0.4533 1.1114 29 1 3.5109 0.7777 2.1326 30 1 6.3103 0.7554 1.0202 31 1 5.6949 1.5229 2.5090 32 1 8.1571 2.4193 0.8763 33 1 7.5715 3.1909 2.3695 34 1 8.7578 4.6453 -0.0373 35 1 8.1720 5.4162 1.4563 36 1 12.8248 5.6810 2.0836 37 1 4.7540 2.8753 -1.8652 38 1 3.1003 3.4876 -1.6230 39 1 4.4944 4.4474 -1.0720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360471357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:00 Heat of formation + Delta-G solvation = -148.969593 kcal Electronic energy + Delta-G solvation = -20838.619241 eV Core-core repulsion = 17552.311182 eV Total energy + Delta-G solvation = -3286.308059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.00609 -40.90422 -38.62031 -37.46710 -35.57405 -33.76630 -32.85324 -32.31618 -29.16376 -27.97878 -27.08837 -24.54721 -23.46319 -22.61482 -21.27812 -20.03126 -19.19919 -18.68410 -18.03620 -17.61087 -17.16173 -16.72536 -16.38262 -16.21047 -15.47054 -15.04308 -14.79250 -14.76342 -14.42743 -14.35860 -14.09542 -13.75989 -13.33816 -13.22765 -13.05110 -12.92867 -12.87924 -12.60488 -12.16429 -12.03884 -11.96256 -11.86967 -11.79985 -11.72526 -11.49921 -11.37727 -10.77473 -10.53350 -9.68669 -8.31039 -6.33472 1.06306 1.33254 1.35348 1.46801 1.50382 1.67520 2.10977 2.35301 3.04871 3.09838 3.39992 3.73530 3.88131 4.02517 4.17023 4.18796 4.29648 4.32410 4.34595 4.38417 4.45870 4.55095 4.64911 4.73858 4.80970 4.91896 4.99548 5.00662 5.10278 5.18066 5.31511 5.35364 5.45282 5.49116 5.61486 6.24267 6.47648 6.63923 6.72924 7.22090 7.31918 8.84553 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046493 B = 0.003681 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.098615 B = 7604.864511 C = 8082.533655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.480 3.520 4 O -0.534 6.534 5 C -0.090 4.090 6 H 0.145 0.855 7 C -0.104 4.104 8 C 0.089 3.911 9 N -0.621 5.621 10 C 0.529 3.471 11 O -0.576 6.576 12 C -0.108 4.108 13 C 0.005 3.995 14 C -0.527 4.527 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.936 3.064 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 C 0.148 3.852 23 H 0.069 0.931 24 C -0.158 4.158 25 H 0.060 0.940 26 H 0.134 0.866 27 H 0.061 0.939 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.010 0.990 35 H 0.006 0.994 36 H 0.267 0.733 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.435 -15.702 -3.661 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.323 3.677 4 O -0.423 6.423 5 C -0.109 4.109 6 H 0.162 0.838 7 C -0.142 4.142 8 C -0.032 4.032 9 N -0.356 5.356 10 C 0.320 3.680 11 O -0.456 6.456 12 C -0.147 4.147 13 C -0.033 4.033 14 C -0.565 4.565 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.584 5.584 18 Si 0.761 3.239 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 C 0.045 3.955 23 H 0.087 0.913 24 C -0.216 4.216 25 H 0.079 0.921 26 H 0.152 0.848 27 H 0.080 0.920 28 H 0.149 0.851 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.029 0.971 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.538 -14.757 -3.949 28.061 hybrid contribution 0.041 1.224 -0.273 1.254 sum -23.497 -13.534 -4.222 27.443 Atomic orbital electron populations 1.23576 0.74683 1.05848 1.02481 1.86498 1.24911 1.31985 1.83471 1.23417 0.91529 0.81428 0.71290 1.90699 1.67712 1.37512 1.46412 1.22287 0.87288 0.96792 1.04569 0.83754 1.22684 0.94490 1.02081 0.94907 1.22414 0.99537 0.82902 0.98358 1.48640 1.12402 1.20033 1.54502 1.20944 0.85887 0.81830 0.79361 1.90599 1.82140 1.28541 1.44300 1.21463 0.90166 1.01229 1.01878 1.19228 0.93383 0.94506 0.96149 1.21414 0.96940 1.04692 1.33414 0.92930 1.25770 0.94791 1.01630 0.96104 1.70016 1.05032 1.36912 1.46401 0.85862 0.77793 0.80222 0.80030 1.19546 1.20348 1.18626 1.21656 0.83501 0.94625 0.95729 0.91295 1.22063 1.01908 1.02136 0.95484 0.92123 0.84774 0.92017 0.85063 0.89483 0.88714 0.89572 0.87807 0.88180 0.97147 0.97528 0.92387 0.92162 0.91325 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.46 16 2 O -0.35 -5.09 10.55 -51.44 -0.54 -5.64 16 3 C 0.48 8.93 7.27 71.24 0.52 9.45 16 4 O -0.53 -13.63 15.36 21.97 0.34 -13.29 16 5 C -0.09 -1.46 2.97 -10.07 -0.03 -1.49 16 6 H 0.14 1.84 8.07 -2.39 -0.02 1.82 16 7 C -0.10 -1.17 6.39 31.79 0.20 -0.97 16 8 C 0.09 1.49 6.49 86.73 0.56 2.05 16 9 N -0.62 -16.60 3.24 -787.71 -2.55 -19.15 16 10 C 0.53 19.29 7.63 87.66 0.67 19.95 16 11 O -0.58 -25.78 13.63 -3.01 -0.04 -25.83 16 12 C -0.11 -4.08 4.83 29.85 0.14 -3.94 16 13 C 0.01 0.27 3.33 29.85 0.10 0.36 16 14 C -0.53 -30.30 9.66 25.60 0.25 -30.05 16 15 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 16 C 0.01 0.88 5.47 84.65 0.46 1.34 16 17 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 18 Si 0.94 47.10 27.47 68.60 1.88 48.98 16 19 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.26 -13.13 6.54 99.48 0.65 -12.48 16 22 C 0.15 3.70 2.83 45.55 0.13 3.83 16 23 H 0.07 1.95 7.53 -2.39 -0.02 1.93 16 24 C -0.16 -4.43 8.71 71.98 0.63 -3.80 16 25 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 26 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 28 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.94 8.04 -2.39 -0.02 0.92 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 35 H 0.01 0.33 7.53 -2.39 -0.02 0.31 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.75 7.95 -2.39 -0.02 1.74 16 39 H 0.06 2.13 5.89 -2.39 -0.01 2.12 16 Total: -1.00 -77.47 322.81 5.18 -72.28 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 0.97 Total: 3.15 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 4.83 Total: -1.80 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.25 Total: -77.86 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.25 Total: -44.75 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.98 kcal Total: -77.47 5.18 -72.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360471357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.688 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds