Wall clock time and date at job start Mon Mar 30 2020 01:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 116.99729 * 2 1 4 4 O 1.20833 * 120.00215 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00070 * 179.97438 * 3 2 1 6 6 H 1.08993 * 110.77992 * 303.23765 * 5 3 2 7 7 C 1.55165 * 110.71840 * 66.47390 * 5 3 2 8 8 C 1.54915 * 101.57980 * 153.86731 * 7 5 3 9 9 N 1.47425 * 104.83334 * 322.99105 * 8 7 5 10 10 C 1.34776 * 125.64906 * 204.09456 * 9 8 7 11 11 O 1.21276 * 120.00039 * 180.02562 * 10 9 8 12 12 C 1.50699 * 119.99965 * 0.03877 * 10 9 8 13 13 C 1.52996 * 109.47014 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46985 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99806 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99699 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99840 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47095 * 59.99228 * 18 16 14 20 20 H 1.48495 * 109.47250 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46772 * 299.99581 * 18 16 14 22 22 C 1.47022 * 108.70334 * 24.12789 * 9 8 7 23 23 H 1.08997 * 109.88723 * 239.52626 * 22 9 8 24 24 C 1.53000 * 109.88459 * 118.35792 * 22 9 8 25 25 H 1.09000 * 109.47534 * 300.00142 * 1 2 3 26 26 H 1.09003 * 109.47156 * 60.00757 * 1 2 3 27 27 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 28 28 H 1.08995 * 111.00547 * 271.94063 * 7 5 3 29 29 H 1.09001 * 111.00003 * 35.79642 * 7 5 3 30 30 H 1.08997 * 110.36462 * 204.15099 * 8 7 5 31 31 H 1.08999 * 110.46102 * 81.87572 * 8 7 5 32 32 H 1.08997 * 109.46961 * 300.00240 * 12 10 9 33 33 H 1.09003 * 109.46873 * 60.00246 * 12 10 9 34 34 H 1.09007 * 109.47029 * 299.99731 * 13 12 10 35 35 H 1.08997 * 109.47411 * 59.99801 * 13 12 10 36 36 H 0.96997 * 120.00043 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.47032 * 302.19352 * 24 22 9 38 38 H 1.09000 * 109.46814 * 62.19024 * 24 22 9 39 39 H 1.08998 * 109.47411 * 182.19040 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9814 0.7376 0.8532 7 6 4.1454 0.7249 -1.3297 8 6 5.4918 1.4856 -1.4209 9 7 5.2020 2.8306 -0.8911 10 6 5.8921 3.9526 -1.1762 11 8 5.5631 5.0093 -0.6803 12 6 7.0723 3.8942 -2.1115 13 6 7.6727 5.2932 -2.2630 14 6 8.8525 5.2349 -3.1987 15 1 9.1451 4.2940 -3.6408 16 6 9.5590 6.3826 -3.4896 17 7 9.2030 7.5283 -2.9509 18 14 11.0220 6.3102 -4.6490 19 1 10.5772 5.8162 -5.9770 20 1 11.6047 7.6681 -4.7961 21 1 12.0467 5.3886 -4.0958 22 6 4.0360 2.7450 0.0004 23 1 3.2383 3.3889 -0.3697 24 6 4.4324 3.1647 1.4173 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 4.3079 -0.3512 -1.2698 29 1 3.4979 0.9745 -2.1704 30 1 5.8220 1.5493 -2.4577 31 1 6.2497 0.9932 -0.8117 32 1 7.8247 3.2183 -1.7051 33 1 6.7459 3.5309 -3.0860 34 1 6.9203 5.9694 -2.6692 35 1 7.9990 5.6561 -1.2883 36 1 9.6999 8.3357 -3.1559 37 1 5.2433 2.5281 1.7714 38 1 4.7628 4.2034 1.4094 39 1 3.5735 3.0617 2.0804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360471358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:02 Heat of formation + Delta-G solvation = -130.615812 kcal Electronic energy + Delta-G solvation = -20770.915360 eV Core-core repulsion = 17485.403180 eV Total energy + Delta-G solvation = -3285.512179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10335 -39.63380 -37.42104 -36.56541 -33.48559 -32.24872 -31.51377 -30.60128 -28.36131 -26.38262 -25.72370 -23.18440 -22.65278 -21.31703 -20.14273 -18.69546 -17.91649 -17.20710 -16.86736 -16.44718 -15.83228 -15.62380 -14.82120 -14.41793 -14.26263 -13.97631 -13.79748 -13.45589 -13.04269 -12.82691 -12.70866 -12.36748 -12.19261 -12.05208 -11.83778 -11.63339 -11.21116 -11.13575 -11.11434 -10.96138 -10.88511 -10.62553 -10.57791 -9.93193 -9.62977 -9.16052 -8.99164 -8.43242 -8.29760 -5.94391 -3.99026 1.88990 2.29156 3.24466 3.27579 3.35337 3.40204 3.41946 4.05732 4.19169 4.45638 4.48642 4.77016 4.81023 4.85809 4.97667 5.03294 5.19242 5.33013 5.37108 5.40326 5.46823 5.57732 5.58650 5.70947 5.81277 6.01417 6.13092 6.21629 6.24852 6.33942 6.58794 6.90544 7.43134 7.75617 7.84482 7.88010 8.08962 8.39757 8.75926 9.09280 9.64337 11.16549 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043010 B = 0.003483 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.849840 B = 8036.902253 C = 8343.820692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.124 0.876 7 C -0.119 4.119 8 C 0.102 3.898 9 N -0.629 5.629 10 C 0.528 3.472 11 O -0.527 6.527 12 C -0.124 4.124 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.144 3.856 23 H 0.093 0.907 24 C -0.161 4.161 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.094 -19.857 6.130 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.384 6.384 5 C -0.114 4.114 6 H 0.142 0.858 7 C -0.157 4.157 8 C -0.022 4.022 9 N -0.366 5.366 10 C 0.319 3.681 11 O -0.401 6.401 12 C -0.163 4.163 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.040 3.960 23 H 0.110 0.890 24 C -0.219 4.219 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.401 -18.671 6.382 24.428 hybrid contribution 0.512 -0.062 -0.582 0.778 sum -13.889 -18.732 5.801 24.030 Atomic orbital electron populations 1.23294 0.76173 1.03736 1.02730 1.86498 1.23513 1.33211 1.84140 1.23383 0.91533 0.81425 0.72280 1.90708 1.66881 1.36263 1.44550 1.22154 0.87678 0.99256 1.02345 0.85840 1.22806 0.96779 1.01019 0.95107 1.22288 0.96250 0.82875 1.00740 1.48824 1.31528 1.08368 1.47928 1.21334 0.83741 0.81335 0.81695 1.90672 1.68176 1.28757 1.52497 1.21862 0.93220 1.04521 0.96737 1.18910 0.95184 0.88305 0.97669 1.21174 1.13402 0.94239 1.27770 0.92657 1.25025 0.97582 0.95511 0.96247 1.69987 1.40290 0.98921 1.43616 0.86652 0.82838 0.77067 0.81359 1.20255 1.21294 1.20247 1.21339 0.89725 0.92957 0.91960 0.88958 1.22133 1.01203 1.03925 0.94646 0.91819 0.91777 0.87994 0.88444 0.90026 0.89503 0.90867 0.90249 0.90298 0.95808 0.95790 0.92883 0.92411 0.90283 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.26 10.57 -39.24 -0.41 -3.67 16 3 C 0.47 5.22 7.26 36.01 0.26 5.48 16 4 O -0.50 -7.14 15.17 -18.76 -0.28 -7.42 16 5 C -0.09 -0.93 2.98 -89.93 -0.27 -1.20 16 6 H 0.12 0.93 7.85 -51.93 -0.41 0.53 16 7 C -0.12 -0.98 6.52 -24.57 -0.16 -1.14 16 8 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 9 N -0.63 -9.51 3.07 -163.02 -0.50 -10.01 16 10 C 0.53 10.57 7.64 -10.99 -0.08 10.48 16 11 O -0.53 -12.78 15.03 5.56 0.08 -12.70 16 12 C -0.12 -2.55 4.64 -27.89 -0.13 -2.67 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 14 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.14 1.99 2.89 -66.95 -0.19 1.80 16 23 H 0.09 1.53 6.81 -51.93 -0.35 1.17 16 24 C -0.16 -2.17 9.09 37.16 0.34 -1.84 16 25 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.71 8.04 -51.93 -0.42 0.30 16 30 H 0.09 0.86 7.48 -51.93 -0.39 0.48 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.48 7.85 -51.93 -0.41 1.08 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.32 6.90 -51.93 -0.36 0.96 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -35.87 327.37 -6.28 -42.15 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -6.10 Total: -3.48 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 0.28 Total: 0.39 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.24 Total: -36.91 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.62 Total: -23.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.87 -6.28 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360471358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.464 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds