Wall clock time and date at job start Mon Mar 30 2020 01:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 116.99729 * 2 1 4 4 O 1.20833 * 120.00215 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00070 * 179.97438 * 3 2 1 6 6 H 1.08993 * 110.77992 * 303.23765 * 5 3 2 7 7 C 1.55165 * 110.71840 * 66.47390 * 5 3 2 8 8 C 1.54915 * 101.57980 * 153.86731 * 7 5 3 9 9 N 1.47425 * 104.83334 * 322.99105 * 8 7 5 10 10 C 1.34776 * 125.64906 * 204.09456 * 9 8 7 11 11 O 1.21276 * 120.00039 * 180.02562 * 10 9 8 12 12 C 1.50699 * 119.99965 * 0.03877 * 10 9 8 13 13 C 1.52996 * 109.47014 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46985 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99806 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99699 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99840 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47095 * 59.99228 * 18 16 14 20 20 H 1.48495 * 109.47250 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46772 * 299.99581 * 18 16 14 22 22 C 1.47022 * 108.70334 * 24.12789 * 9 8 7 23 23 H 1.08997 * 109.88723 * 239.52626 * 22 9 8 24 24 C 1.53000 * 109.88459 * 118.35792 * 22 9 8 25 25 H 1.09000 * 109.47534 * 300.00142 * 1 2 3 26 26 H 1.09003 * 109.47156 * 60.00757 * 1 2 3 27 27 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 28 28 H 1.08995 * 111.00547 * 271.94063 * 7 5 3 29 29 H 1.09001 * 111.00003 * 35.79642 * 7 5 3 30 30 H 1.08997 * 110.36462 * 204.15099 * 8 7 5 31 31 H 1.08999 * 110.46102 * 81.87572 * 8 7 5 32 32 H 1.08997 * 109.46961 * 300.00240 * 12 10 9 33 33 H 1.09003 * 109.46873 * 60.00246 * 12 10 9 34 34 H 1.09007 * 109.47029 * 299.99731 * 13 12 10 35 35 H 1.08997 * 109.47411 * 59.99801 * 13 12 10 36 36 H 0.96997 * 120.00043 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.47032 * 302.19352 * 24 22 9 38 38 H 1.09000 * 109.46814 * 62.19024 * 24 22 9 39 39 H 1.08998 * 109.47411 * 182.19040 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9814 0.7376 0.8532 7 6 4.1454 0.7249 -1.3297 8 6 5.4918 1.4856 -1.4209 9 7 5.2020 2.8306 -0.8911 10 6 5.8921 3.9526 -1.1762 11 8 5.5631 5.0093 -0.6803 12 6 7.0723 3.8942 -2.1115 13 6 7.6727 5.2932 -2.2630 14 6 8.8525 5.2349 -3.1987 15 1 9.1451 4.2940 -3.6408 16 6 9.5590 6.3826 -3.4896 17 7 9.2030 7.5283 -2.9509 18 14 11.0220 6.3102 -4.6490 19 1 10.5772 5.8162 -5.9770 20 1 11.6047 7.6681 -4.7961 21 1 12.0467 5.3886 -4.0958 22 6 4.0360 2.7450 0.0004 23 1 3.2383 3.3889 -0.3697 24 6 4.4324 3.1647 1.4173 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 4.3079 -0.3512 -1.2698 29 1 3.4979 0.9745 -2.1704 30 1 5.8220 1.5493 -2.4577 31 1 6.2497 0.9932 -0.8117 32 1 7.8247 3.2183 -1.7051 33 1 6.7459 3.5309 -3.0860 34 1 6.9203 5.9694 -2.6692 35 1 7.9990 5.6561 -1.2883 36 1 9.6999 8.3357 -3.1559 37 1 5.2433 2.5281 1.7714 38 1 4.7628 4.2034 1.4094 39 1 3.5735 3.0617 2.0804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360471358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:02 Heat of formation + Delta-G solvation = -155.120035 kcal Electronic energy + Delta-G solvation = -20771.977943 eV Core-core repulsion = 17485.403180 eV Total energy + Delta-G solvation = -3286.574762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.02629 -40.86005 -38.66535 -37.48318 -35.58532 -33.65905 -32.67262 -32.21679 -29.12751 -27.74997 -27.15659 -24.69188 -23.48975 -22.86619 -21.20705 -19.93438 -19.08070 -18.57714 -17.98667 -17.56134 -17.12841 -16.91124 -16.46901 -16.25363 -15.42001 -14.98370 -14.63994 -14.51866 -14.32149 -14.15302 -14.02706 -13.78187 -13.33314 -13.20872 -13.06183 -12.81163 -12.76153 -12.62574 -12.49341 -12.06704 -11.95681 -11.85368 -11.79576 -11.62180 -11.48527 -11.31319 -10.69960 -10.55534 -9.68039 -8.17139 -6.31797 1.05293 1.42527 1.47758 1.48402 1.55516 1.69216 2.10811 2.44311 3.13545 3.15736 3.40577 3.71214 3.93630 4.06095 4.18906 4.22484 4.29641 4.32207 4.33076 4.46527 4.51166 4.53628 4.66495 4.72703 4.78133 4.95470 4.97901 5.05903 5.13348 5.17785 5.29067 5.44128 5.51471 5.62356 5.85193 6.17282 6.49059 6.63102 6.86796 7.25141 7.38722 8.95580 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043010 B = 0.003483 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.849840 B = 8036.902253 C = 8343.820692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.475 3.525 4 O -0.540 6.540 5 C -0.083 4.083 6 H 0.159 0.841 7 C -0.106 4.106 8 C 0.089 3.911 9 N -0.621 5.621 10 C 0.523 3.477 11 O -0.587 6.587 12 C -0.109 4.109 13 C 0.043 3.957 14 C -0.543 4.543 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.940 5.940 18 Si 0.976 3.024 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.260 1.260 22 C 0.137 3.863 23 H 0.056 0.944 24 C -0.155 4.155 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.103 0.897 34 H -0.022 1.022 35 H -0.019 1.019 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 -24.244 5.320 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.319 3.681 4 O -0.430 6.430 5 C -0.103 4.103 6 H 0.177 0.823 7 C -0.144 4.144 8 C -0.032 4.032 9 N -0.355 5.355 10 C 0.314 3.686 11 O -0.467 6.467 12 C -0.149 4.149 13 C 0.005 3.995 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.215 1.215 21 H -0.184 1.184 22 C 0.033 3.967 23 H 0.074 0.926 24 C -0.213 4.213 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.159 0.841 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.121 0.879 34 H -0.004 1.004 35 H 0.000 1.000 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.619 -23.169 5.565 27.445 hybrid contribution 0.142 1.256 -0.288 1.296 sum -13.477 -21.913 5.277 26.261 Atomic orbital electron populations 1.23584 0.74759 1.05925 1.02366 1.86487 1.24838 1.31750 1.83463 1.23598 0.91976 0.81361 0.71129 1.90711 1.67848 1.37786 1.46655 1.22120 0.87045 0.96188 1.04912 0.82328 1.22866 0.94857 1.03081 0.93579 1.22772 0.98466 0.80246 1.01708 1.48699 1.30667 1.09027 1.47153 1.21157 0.84072 0.81875 0.81460 1.90652 1.69876 1.31420 1.54763 1.21597 0.94083 1.00637 0.98537 1.18690 0.94355 0.91460 0.94996 1.21681 1.13445 0.95263 1.27640 0.90306 1.26179 1.01266 0.94935 0.98206 1.70184 1.42169 0.99974 1.45644 0.85346 0.78452 0.77216 0.79055 1.18610 1.21501 1.18445 1.21376 0.88218 0.95678 0.91426 0.92631 1.22061 1.02480 1.01691 0.95092 0.92122 0.92353 0.84487 0.84050 0.90742 0.88599 0.87875 0.87474 0.87912 1.00355 1.00023 0.92882 0.90251 0.94543 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.36 10.57 -51.34 -0.54 -5.91 16 3 C 0.48 9.67 7.26 71.24 0.52 10.18 16 4 O -0.54 -15.60 15.17 21.94 0.33 -15.27 16 5 C -0.08 -1.39 2.98 -10.35 -0.03 -1.42 16 6 H 0.16 1.60 7.85 -2.39 -0.02 1.58 16 7 C -0.11 -1.29 6.52 31.99 0.21 -1.08 16 8 C 0.09 1.51 6.69 86.86 0.58 2.09 16 9 N -0.62 -18.26 3.07 -788.05 -2.42 -20.68 16 10 C 0.52 21.57 7.64 87.66 0.67 22.24 16 11 O -0.59 -30.77 15.03 -3.02 -0.05 -30.81 16 12 C -0.11 -4.48 4.64 29.85 0.14 -4.34 16 13 C 0.04 2.43 4.26 29.85 0.13 2.56 16 14 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 15 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 16 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 17 N -0.94 -60.60 13.29 21.45 0.28 -60.31 16 18 Si 0.98 44.42 29.54 68.60 2.03 46.45 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 22 C 0.14 3.74 2.89 45.34 0.13 3.87 16 23 H 0.06 1.95 6.81 -2.39 -0.02 1.94 16 24 C -0.16 -4.22 9.09 71.98 0.65 -3.56 16 25 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 26 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 27 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 1.06 8.04 -2.39 -0.02 1.04 16 30 H 0.10 1.52 7.48 -2.39 -0.02 1.50 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 3.78 8.14 -2.39 -0.02 3.77 16 33 H 0.10 3.70 7.85 -2.39 -0.02 3.69 16 34 H -0.02 -1.43 8.10 -2.38 -0.02 -1.45 16 35 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 36 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.04 1.30 6.90 -2.39 -0.02 1.28 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -85.68 327.37 5.56 -80.12 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.03 Total: 5.26 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.89 Total: 1.14 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.13 Total: -80.99 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.25 Total: -51.99 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -85.68 5.56 -80.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360471358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.999 kcal (2) G-P(sol) polarization free energy of solvation -85.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds