Wall clock time and date at job start Mon Mar 30 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.05163 * 2 1 4 4 O 1.43889 * 109.91009 * 238.81339 * 2 1 3 5 5 C 1.44427 * 107.00101 * 214.26419 * 4 2 1 6 6 C 1.55104 * 103.56257 * 39.72456 * 5 4 2 7 7 C 1.53574 * 109.90696 * 121.17850 * 2 1 3 8 8 C 1.53086 * 110.29177 * 239.88451 * 7 2 1 9 9 N 1.47276 * 108.15972 * 173.81570 * 8 7 2 10 10 C 1.34776 * 121.04572 * 130.38748 * 9 8 7 11 11 O 1.21691 * 120.00123 * 354.47822 * 10 9 8 12 12 C 1.46376 * 120.00110 * 174.48092 * 10 9 8 13 13 H 1.08005 * 120.00045 * 5.01507 * 12 10 9 14 14 C 1.40053 * 120.00293 * 185.01936 * 12 10 9 15 15 N 1.30670 * 119.99839 * 5.05392 * 14 12 10 16 16 Si 1.86794 * 119.99960 * 185.05614 * 14 12 10 17 17 H 1.48507 * 109.47103 * 84.99774 * 16 14 12 18 18 H 1.48497 * 109.47569 * 324.99549 * 16 14 12 19 19 H 1.48506 * 109.47108 * 204.99516 * 16 14 12 20 20 C 1.47155 * 117.90777 * 310.10832 * 9 8 7 21 21 C 1.53283 * 108.52389 * 51.29385 * 20 9 8 22 22 H 1.09000 * 109.51084 * 67.12099 * 21 20 9 23 23 C 1.52995 * 109.51222 * 187.26855 * 21 20 9 24 24 O 1.42219 * 110.65863 * 2.77179 * 7 2 1 25 25 H 1.09005 * 109.46874 * 298.82529 * 1 2 3 26 26 H 1.08997 * 109.46951 * 58.82029 * 1 2 3 27 27 H 1.08994 * 109.47416 * 178.82478 * 1 2 3 28 28 H 1.09004 * 110.59792 * 281.21271 * 5 4 2 29 29 H 1.08994 * 110.60822 * 158.25133 * 5 4 2 30 30 H 1.08994 * 110.93502 * 205.23681 * 6 5 4 31 31 H 1.09011 * 110.95868 * 81.58368 * 6 5 4 32 32 H 1.08997 * 109.83890 * 54.13056 * 8 7 2 33 33 H 1.08996 * 109.74291 * 293.43907 * 8 7 2 34 34 H 0.97000 * 120.00101 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.62953 * 171.00396 * 20 9 8 36 36 H 1.08994 * 109.62662 * 291.39213 * 20 9 8 37 37 H 1.08998 * 109.47458 * 60.00035 * 23 21 20 38 38 H 1.08999 * 109.47465 * 180.02562 * 23 21 20 39 39 H 1.09000 * 109.47207 * 300.00008 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0200 -0.7006 -1.1574 5 6 3.2371 -1.3701 -0.7618 6 6 2.9193 -1.8896 0.6646 7 6 2.0529 -0.7476 1.2354 8 6 2.9111 0.1836 2.0956 9 7 3.2625 -0.5304 3.3349 10 6 4.5371 -0.5819 3.7698 11 8 5.4323 -0.1208 3.0865 12 6 4.8447 -1.1926 5.0640 13 1 4.0632 -1.6737 5.6335 14 6 6.1523 -1.1529 5.5640 15 7 7.0765 -0.4865 4.9242 16 14 6.5752 -2.0526 7.1455 17 1 6.8872 -3.4719 6.8392 18 1 5.4192 -1.9894 8.0754 19 1 7.7557 -1.4119 7.7790 20 6 2.1772 -1.1804 4.0866 21 6 1.3769 -2.0625 3.1217 22 1 1.9987 -2.8926 2.7865 23 6 0.1376 -2.6065 3.8351 24 8 0.9740 -1.2812 1.9929 25 1 -0.3633 0.4955 0.9004 26 1 -0.3633 0.5320 -0.8792 27 1 -0.3634 -1.0274 -0.0211 28 1 4.0705 -0.6680 -0.7375 29 1 3.4535 -2.2009 -1.4334 30 1 3.8326 -2.0137 1.2463 31 1 2.3562 -2.8222 0.6235 32 1 2.3491 1.0855 2.3382 33 1 3.8195 0.4506 1.5556 34 1 7.9822 -0.4593 5.2703 35 1 2.5996 -1.7961 4.8807 36 1 1.5257 -0.4212 4.5191 37 1 -0.4843 -1.7755 4.1678 38 1 -0.4308 -3.2340 3.1486 39 1 0.4452 -3.1981 4.6974 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366196993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:10 Heat of formation + Delta-G solvation = -121.413654 kcal Electronic energy + Delta-G solvation = -22402.769965 eV Core-core repulsion = 19117.656821 eV Total energy + Delta-G solvation = -3285.113144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48365 -38.00613 -36.70463 -33.51682 -33.09525 -32.42777 -31.29078 -30.04461 -27.78509 -26.04371 -25.40338 -23.66004 -22.39131 -21.26690 -19.81647 -18.80800 -16.78048 -16.45814 -16.13876 -15.87999 -15.58254 -14.96091 -14.52816 -14.34224 -14.00321 -13.60078 -13.42507 -12.74006 -12.66336 -12.39564 -12.20306 -12.04955 -11.96313 -11.67116 -11.57251 -11.29485 -11.22993 -11.06092 -11.00225 -10.74085 -10.57146 -10.32943 -10.23354 -9.95979 -9.53832 -9.41683 -8.92377 -7.71126 -7.29952 -6.31252 -4.75137 3.07704 3.14600 3.16880 3.77421 3.97246 4.00939 4.33059 4.44756 4.78653 4.93737 5.10984 5.20465 5.30573 5.37502 5.45766 5.50696 5.59061 5.60557 5.71954 5.78523 5.87700 5.88389 5.96038 6.12685 6.13660 6.15806 6.19553 6.28344 6.31097 6.36581 6.47175 6.52495 7.02883 7.35125 7.40570 7.55820 7.99034 8.21734 8.91923 9.29304 10.45617 10.63985 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.006332 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.827334 B = 4420.822831 C = 5087.395263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.088 3.912 3 H 0.078 0.922 4 O -0.376 6.376 5 C 0.050 3.950 6 C -0.175 4.175 7 C 0.083 3.917 8 C 0.104 3.896 9 N -0.643 5.643 10 C 0.561 3.439 11 O -0.577 6.577 12 C -0.545 4.545 13 H 0.073 0.927 14 C 0.089 3.911 15 N -0.766 5.766 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.265 1.265 19 H -0.279 1.279 20 C 0.096 3.904 21 C 0.068 3.932 22 H 0.061 0.939 23 C -0.139 4.139 24 O -0.363 6.363 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.270 0.730 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 -3.007 -4.308 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.029 3.971 3 H 0.095 0.905 4 O -0.295 6.295 5 C -0.027 4.027 6 C -0.212 4.212 7 C 0.041 3.959 8 C -0.020 4.020 9 N -0.382 5.382 10 C 0.367 3.633 11 O -0.459 6.459 12 C -0.581 4.581 13 H 0.091 0.909 14 C -0.131 4.131 15 N -0.395 5.395 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.189 1.189 19 H -0.204 1.204 20 C -0.029 4.029 21 C 0.010 3.990 22 H 0.079 0.921 23 C -0.197 4.197 24 O -0.283 6.283 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.825 -2.644 -4.931 12.186 hybrid contribution 0.586 -0.520 1.161 1.400 sum -10.240 -3.164 -3.770 11.361 Atomic orbital electron populations 1.21594 0.92846 1.03040 1.01493 1.22594 0.96099 0.94979 0.83378 0.90463 1.88888 1.40149 1.67687 1.32813 1.23487 0.87647 0.96493 0.95060 1.23611 1.01795 0.98858 0.96980 1.22776 0.87480 0.93838 0.91767 1.21758 0.98816 0.93488 0.87956 1.48318 1.08015 1.57738 1.24086 1.18266 0.78737 0.79342 0.86906 1.90596 1.44332 1.52391 1.58603 1.20935 0.94931 1.38940 1.03315 0.90949 1.25719 0.95954 0.93710 0.97762 1.69989 1.02243 1.31115 1.36119 0.86396 0.78646 0.80015 0.81806 1.19560 1.18885 1.20416 1.22098 0.89705 0.96170 0.94894 1.22591 0.96129 0.93410 0.86854 0.92149 1.21690 0.96912 1.01092 0.99957 1.87763 1.30836 1.68988 1.40678 0.91008 0.92778 0.91606 0.91636 0.89058 0.88836 0.90336 0.93006 0.88902 0.91921 0.88277 0.93102 0.91909 0.92195 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.62 37.16 0.32 -1.44 16 2 C 0.09 1.33 3.73 -26.43 -0.10 1.24 16 3 H 0.08 1.13 7.67 -51.93 -0.40 0.73 16 4 O -0.38 -6.01 11.20 -35.23 -0.39 -6.41 16 5 C 0.05 0.75 7.73 38.27 0.30 1.05 16 6 C -0.17 -2.93 5.16 -24.94 -0.13 -3.05 16 7 C 0.08 1.39 0.96 -89.60 -0.09 1.31 16 8 C 0.10 2.06 5.02 -3.57 -0.02 2.05 16 9 N -0.64 -14.35 2.68 -173.97 -0.47 -14.81 16 10 C 0.56 15.48 7.62 -12.99 -0.10 15.38 16 11 O -0.58 -18.07 14.55 5.20 0.08 -17.99 16 12 C -0.54 -14.79 8.86 -35.63 -0.32 -15.11 16 13 H 0.07 1.78 5.76 -52.48 -0.30 1.48 16 14 C 0.09 2.40 5.49 -17.37 -0.10 2.31 16 15 N -0.77 -22.37 11.87 55.55 0.66 -21.71 16 16 Si 0.91 19.50 29.56 -169.99 -5.03 14.47 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 C 0.10 1.77 5.78 -3.54 -0.02 1.75 16 21 C 0.07 1.08 3.15 -26.59 -0.08 0.99 16 22 H 0.06 1.00 6.96 -51.93 -0.36 0.64 16 23 C -0.14 -1.69 9.57 37.16 0.36 -1.33 16 24 O -0.36 -5.94 8.03 -35.23 -0.28 -6.22 16 25 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.91 7.82 -51.93 -0.41 0.51 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.84 7.62 -51.93 -0.40 1.44 16 31 H 0.08 1.25 7.70 -51.92 -0.40 0.85 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 2.02 7.06 -51.93 -0.37 1.65 16 34 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 35 H 0.10 1.87 5.49 -51.93 -0.29 1.58 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -32.45 308.34 -6.60 -39.05 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.84 Total: 3.84 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 0.03 Total: 5.13 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.19 Total: -36.53 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.60 Total: -30.62 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.45 -6.60 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366196993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.364 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds