Wall clock time and date at job start Mon Mar 30 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.05163 * 2 1 4 4 O 1.43889 * 109.91009 * 238.81339 * 2 1 3 5 5 C 1.44427 * 107.00101 * 214.26419 * 4 2 1 6 6 C 1.55104 * 103.56257 * 39.72456 * 5 4 2 7 7 C 1.53574 * 109.90696 * 121.17850 * 2 1 3 8 8 C 1.53086 * 110.29177 * 239.88451 * 7 2 1 9 9 N 1.47276 * 108.15972 * 173.81570 * 8 7 2 10 10 C 1.34776 * 121.04572 * 130.38748 * 9 8 7 11 11 O 1.21691 * 120.00123 * 354.47822 * 10 9 8 12 12 C 1.46376 * 120.00110 * 174.48092 * 10 9 8 13 13 H 1.08005 * 120.00045 * 5.01507 * 12 10 9 14 14 C 1.40053 * 120.00293 * 185.01936 * 12 10 9 15 15 N 1.30670 * 119.99839 * 5.05392 * 14 12 10 16 16 Si 1.86794 * 119.99960 * 185.05614 * 14 12 10 17 17 H 1.48507 * 109.47103 * 84.99774 * 16 14 12 18 18 H 1.48497 * 109.47569 * 324.99549 * 16 14 12 19 19 H 1.48506 * 109.47108 * 204.99516 * 16 14 12 20 20 C 1.47155 * 117.90777 * 310.10832 * 9 8 7 21 21 C 1.53283 * 108.52389 * 51.29385 * 20 9 8 22 22 H 1.09000 * 109.51084 * 67.12099 * 21 20 9 23 23 C 1.52995 * 109.51222 * 187.26855 * 21 20 9 24 24 O 1.42219 * 110.65863 * 2.77179 * 7 2 1 25 25 H 1.09005 * 109.46874 * 298.82529 * 1 2 3 26 26 H 1.08997 * 109.46951 * 58.82029 * 1 2 3 27 27 H 1.08994 * 109.47416 * 178.82478 * 1 2 3 28 28 H 1.09004 * 110.59792 * 281.21271 * 5 4 2 29 29 H 1.08994 * 110.60822 * 158.25133 * 5 4 2 30 30 H 1.08994 * 110.93502 * 205.23681 * 6 5 4 31 31 H 1.09011 * 110.95868 * 81.58368 * 6 5 4 32 32 H 1.08997 * 109.83890 * 54.13056 * 8 7 2 33 33 H 1.08996 * 109.74291 * 293.43907 * 8 7 2 34 34 H 0.97000 * 120.00101 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.62953 * 171.00396 * 20 9 8 36 36 H 1.08994 * 109.62662 * 291.39213 * 20 9 8 37 37 H 1.08998 * 109.47458 * 60.00035 * 23 21 20 38 38 H 1.08999 * 109.47465 * 180.02562 * 23 21 20 39 39 H 1.09000 * 109.47207 * 300.00008 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 8 2.0200 -0.7006 -1.1574 5 6 3.2371 -1.3701 -0.7618 6 6 2.9193 -1.8896 0.6646 7 6 2.0529 -0.7476 1.2354 8 6 2.9111 0.1836 2.0956 9 7 3.2625 -0.5304 3.3349 10 6 4.5371 -0.5819 3.7698 11 8 5.4323 -0.1208 3.0865 12 6 4.8447 -1.1926 5.0640 13 1 4.0632 -1.6737 5.6335 14 6 6.1523 -1.1529 5.5640 15 7 7.0765 -0.4865 4.9242 16 14 6.5752 -2.0526 7.1455 17 1 6.8872 -3.4719 6.8392 18 1 5.4192 -1.9894 8.0754 19 1 7.7557 -1.4119 7.7790 20 6 2.1772 -1.1804 4.0866 21 6 1.3769 -2.0625 3.1217 22 1 1.9987 -2.8926 2.7865 23 6 0.1376 -2.6065 3.8351 24 8 0.9740 -1.2812 1.9929 25 1 -0.3633 0.4955 0.9004 26 1 -0.3633 0.5320 -0.8792 27 1 -0.3634 -1.0274 -0.0211 28 1 4.0705 -0.6680 -0.7375 29 1 3.4535 -2.2009 -1.4334 30 1 3.8326 -2.0137 1.2463 31 1 2.3562 -2.8222 0.6235 32 1 2.3491 1.0855 2.3382 33 1 3.8195 0.4506 1.5556 34 1 7.9822 -0.4593 5.2703 35 1 2.5996 -1.7961 4.8807 36 1 1.5257 -0.4212 4.5191 37 1 -0.4843 -1.7755 4.1678 38 1 -0.4308 -3.2340 3.1486 39 1 0.4452 -3.1981 4.6974 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366196993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:10 Heat of formation + Delta-G solvation = -144.153959 kcal Electronic energy + Delta-G solvation = -22403.756059 eV Core-core repulsion = 19117.656821 eV Total energy + Delta-G solvation = -3286.099237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88800 -39.58067 -38.43624 -35.30503 -34.73687 -34.18867 -32.51328 -31.33263 -29.48577 -27.76134 -26.85901 -25.14511 -23.71736 -22.56366 -21.53367 -20.36954 -18.59977 -17.90212 -17.76630 -17.47653 -16.91693 -16.55368 -16.00629 -15.95280 -15.52834 -15.06124 -14.93912 -14.49536 -13.96029 -13.75000 -13.58585 -13.40551 -13.23384 -13.15647 -12.99011 -12.96737 -12.76251 -12.54102 -12.30608 -12.17459 -12.08133 -11.98242 -11.84568 -11.42379 -10.99694 -10.86858 -10.75767 -9.85228 -9.10916 -8.35070 -6.88697 1.38521 1.39861 1.54378 2.19093 2.40804 2.45534 2.63773 2.76516 3.42706 3.53235 3.58673 3.76575 3.94206 4.02151 4.13784 4.17263 4.30845 4.36215 4.38170 4.45000 4.57278 4.65007 4.65738 4.76586 4.83414 4.90186 4.96833 4.99256 5.06551 5.09483 5.31553 5.34284 5.39027 5.62968 5.78089 6.03064 6.20193 6.26137 6.83355 7.32121 8.39411 8.61545 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.006332 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.827334 B = 4420.822831 C = 5087.395263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.085 3.915 3 H 0.081 0.919 4 O -0.379 6.379 5 C 0.053 3.947 6 C -0.171 4.171 7 C 0.089 3.911 8 C 0.104 3.896 9 N -0.645 5.645 10 C 0.545 3.455 11 O -0.629 6.629 12 C -0.569 4.569 13 H 0.094 0.906 14 C 0.031 3.969 15 N -0.821 5.821 16 Si 0.994 3.006 17 H -0.261 1.261 18 H -0.246 1.246 19 H -0.275 1.275 20 C 0.092 3.908 21 C 0.071 3.929 22 H 0.050 0.950 23 C -0.130 4.130 24 O -0.356 6.356 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.275 0.725 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 -4.321 -3.409 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.027 3.973 3 H 0.099 0.901 4 O -0.299 6.299 5 C -0.023 4.023 6 C -0.209 4.209 7 C 0.048 3.952 8 C -0.020 4.020 9 N -0.382 5.382 10 C 0.352 3.648 11 O -0.516 6.516 12 C -0.605 4.605 13 H 0.112 0.888 14 C -0.184 4.184 15 N -0.451 5.451 16 Si 0.814 3.186 17 H -0.186 1.186 18 H -0.169 1.169 19 H -0.200 1.200 20 C -0.032 4.032 21 C 0.013 3.987 22 H 0.068 0.932 23 C -0.188 4.188 24 O -0.276 6.276 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.168 -3.965 -4.038 14.333 hybrid contribution 1.260 -0.066 0.841 1.516 sum -11.908 -4.031 -3.198 12.972 Atomic orbital electron populations 1.21561 0.90794 1.03176 1.02655 1.22706 0.97658 0.94753 0.82157 0.90080 1.88885 1.40173 1.67778 1.33028 1.23514 0.87230 0.97006 0.94596 1.23513 1.00279 0.99543 0.97534 1.22652 0.87317 0.93371 0.91904 1.21840 0.98257 0.94608 0.87343 1.48153 1.07580 1.57534 1.24966 1.18644 0.79907 0.79073 0.87208 1.90544 1.46596 1.54517 1.59976 1.21461 0.96200 1.39245 1.03556 0.88777 1.26974 0.95436 0.94075 1.01957 1.70162 1.02999 1.33128 1.38784 0.85076 0.78860 0.78366 0.76340 1.18585 1.16880 1.19963 1.22335 0.88827 0.96695 0.95308 1.22661 0.97563 0.92253 0.86196 0.93213 1.21684 0.95086 1.01649 1.00350 1.87789 1.30217 1.68855 1.40692 0.90386 0.91068 0.91937 0.92633 0.86466 0.92503 0.89139 0.92003 0.91826 0.91515 0.88766 0.91794 0.91033 0.90775 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 8.62 71.98 0.62 -2.36 16 2 C 0.09 2.49 3.73 30.79 0.11 2.60 16 3 H 0.08 2.30 7.67 -2.39 -0.02 2.28 16 4 O -0.38 -11.59 11.20 -148.98 -1.67 -13.26 16 5 C 0.05 1.58 7.73 72.70 0.56 2.14 16 6 C -0.17 -5.76 5.16 31.75 0.16 -5.60 16 7 C 0.09 2.96 0.96 -10.13 -0.01 2.95 16 8 C 0.10 4.21 5.02 86.26 0.43 4.65 16 9 N -0.65 -29.52 2.68 -822.55 -2.20 -31.72 16 10 C 0.54 31.31 7.62 86.36 0.66 31.97 16 11 O -0.63 -41.78 14.55 -4.32 -0.06 -41.84 16 12 C -0.57 -31.38 8.86 24.83 0.22 -31.16 16 13 H 0.09 4.59 5.76 -2.91 -0.02 4.58 16 14 C 0.03 1.69 5.49 85.31 0.47 2.16 16 15 N -0.82 -49.67 11.87 21.84 0.26 -49.41 16 16 Si 0.99 39.83 29.56 68.60 2.03 41.86 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 18 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 20 C 0.09 3.30 5.78 86.35 0.50 3.80 16 21 C 0.07 2.13 3.15 30.69 0.10 2.23 16 22 H 0.05 1.60 6.96 -2.39 -0.02 1.59 16 23 C -0.13 -2.73 9.57 71.98 0.69 -2.04 16 24 O -0.36 -10.98 8.03 -148.98 -1.20 -12.18 16 25 H 0.08 1.77 7.94 -2.38 -0.02 1.76 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.55 7.82 -2.39 -0.02 1.53 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.06 2.35 7.62 -2.39 -0.02 2.33 16 31 H 0.09 2.80 7.70 -2.38 -0.02 2.78 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 2.95 7.06 -2.39 -0.02 2.94 16 34 H 0.27 15.09 8.29 -92.71 -0.77 14.32 16 35 H 0.09 3.46 5.49 -2.39 -0.01 3.45 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -73.15 308.34 2.71 -70.43 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 1.04 Total: 24.77 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 4.52 Total: 11.34 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.94 Total: -81.13 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -2.93 Total: -67.28 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -73.15 2.71 -70.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366196993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.721 kcal (2) G-P(sol) polarization free energy of solvation -73.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds