Wall clock time and date at job start Mon Mar 30 2020 01:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.90118 * 2 1 4 4 O 1.43898 * 110.07100 * 238.80972 * 2 1 3 5 5 C 1.44433 * 106.98913 * 214.15374 * 4 2 1 6 6 C 1.55108 * 103.56692 * 39.73856 * 5 4 2 7 7 C 1.53583 * 109.90847 * 121.08207 * 2 1 3 8 8 C 1.52663 * 110.33998 * 3.40728 * 7 2 1 9 9 N 1.47279 * 108.38914 * 287.88449 * 8 7 2 10 10 C 1.34778 * 121.04130 * 130.41440 * 9 8 7 11 11 O 1.21688 * 120.00331 * 5.55665 * 10 9 8 12 12 C 1.46380 * 119.99836 * 185.56359 * 10 9 8 13 13 H 1.07991 * 119.99905 * 8.37039 * 12 10 9 14 14 C 1.40040 * 119.99979 * 188.37148 * 12 10 9 15 15 N 1.30677 * 120.00242 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00372 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47060 * 59.99609 * 16 14 12 18 18 H 1.48497 * 109.47454 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46904 * 300.00161 * 16 14 12 20 20 C 1.47157 * 117.91422 * 310.40699 * 9 8 7 21 21 C 1.53277 * 108.50947 * 51.03404 * 20 9 8 22 22 H 1.08997 * 109.54912 * 67.15152 * 21 20 9 23 23 C 1.53001 * 109.51158 * 187.26997 * 21 20 9 24 24 O 1.42235 * 110.61821 * 240.44652 * 7 2 1 25 25 H 1.08989 * 109.47585 * 306.63167 * 1 2 3 26 26 H 1.09004 * 109.46951 * 66.63397 * 1 2 3 27 27 H 1.09004 * 109.47084 * 186.62446 * 1 2 3 28 28 H 1.09002 * 110.60226 * 158.25554 * 5 4 2 29 29 H 1.08998 * 110.61064 * 281.21229 * 5 4 2 30 30 H 1.09001 * 110.93102 * 205.24813 * 6 5 4 31 31 H 1.08996 * 110.93346 * 81.57321 * 6 5 4 32 32 H 1.08998 * 109.68107 * 47.61245 * 8 7 2 33 33 H 1.09002 * 109.68427 * 168.15987 * 8 7 2 34 34 H 0.96996 * 120.00340 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.63187 * 291.32678 * 20 9 8 36 36 H 1.08996 * 109.63111 * 170.74211 * 20 9 8 37 37 H 1.09004 * 109.47235 * 179.76177 * 23 21 20 38 38 H 1.09005 * 109.46506 * 59.76744 * 23 21 20 39 39 H 1.08999 * 109.46987 * 299.76692 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0238 -0.7000 -1.1562 5 6 3.2423 -1.3655 -0.7581 6 6 2.9237 -1.8852 0.6682 7 6 2.0529 -0.7455 1.2367 8 6 0.8901 -1.3271 2.0368 9 7 0.1848 -0.2194 2.7036 10 6 -1.1548 -0.0975 2.6192 11 8 -1.8113 -0.9632 2.0712 12 6 -1.8200 1.0765 3.1866 13 1 -1.2328 1.9063 3.5510 14 6 -3.2178 1.1235 3.2569 15 7 -3.9284 0.1196 2.8155 16 14 -4.0668 2.6212 3.9816 17 1 -3.7067 3.8254 3.1907 18 1 -5.5382 2.4245 3.9406 19 1 -3.6305 2.8048 5.3892 20 6 0.9886 0.7500 3.4650 21 6 2.1305 1.2447 2.5702 22 1 1.7214 1.8315 1.7478 23 6 3.0846 2.1132 3.3925 24 8 2.8409 0.1186 2.0464 25 1 -0.3634 0.6131 0.8246 26 1 -0.3633 0.4076 -0.9434 27 1 -0.3633 -1.0208 0.1186 28 1 3.4623 -2.1961 -1.4287 29 1 4.0736 -0.6610 -0.7329 30 1 3.8365 -2.0058 1.2515 31 1 2.3636 -2.8193 0.6262 32 1 0.2062 -1.8467 1.3656 33 1 1.2706 -2.0230 2.7846 34 1 -4.8966 0.1519 2.8645 35 1 1.4006 0.2679 4.3515 36 1 0.3633 1.5925 3.7601 37 1 3.8987 2.4612 2.7566 38 1 3.4921 1.5262 4.2156 39 1 2.5428 2.9709 3.7911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366196994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:12 Heat of formation + Delta-G solvation = -104.537691 kcal Electronic energy + Delta-G solvation = -22799.901704 eV Core-core repulsion = 19515.520357 eV Total energy + Delta-G solvation = -3284.381347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69598 -37.90492 -36.79228 -33.55387 -33.20532 -32.43386 -31.08682 -30.11681 -27.46384 -25.89270 -25.45440 -23.83096 -22.19681 -21.22738 -19.99405 -18.62740 -17.11652 -16.78429 -16.00323 -15.44502 -15.18352 -14.93434 -14.81847 -14.29021 -13.89601 -13.78825 -13.51202 -12.78894 -12.49477 -12.37231 -12.20954 -12.02844 -11.83251 -11.57428 -11.28335 -11.19792 -11.11016 -10.97255 -10.78980 -10.65615 -10.63948 -10.32139 -10.10039 -9.88600 -9.59117 -9.20679 -8.89213 -7.67751 -7.25252 -6.28519 -4.74210 3.09999 3.15802 3.16885 3.75070 3.99077 4.15341 4.33579 4.46593 4.77009 4.92975 5.01208 5.19667 5.30454 5.35426 5.46221 5.54743 5.64622 5.69315 5.77024 5.83710 5.87862 5.94783 6.03086 6.06390 6.10877 6.22374 6.28827 6.31348 6.43299 6.53507 6.68682 7.14094 7.15723 7.36328 7.41031 7.55900 8.00042 8.22673 8.93328 9.30010 10.47152 10.65431 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024354 B = 0.006994 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.441079 B = 4002.739386 C = 4595.222437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.060 3.940 3 H 0.066 0.934 4 O -0.375 6.375 5 C 0.048 3.952 6 C -0.141 4.141 7 C 0.080 3.920 8 C 0.101 3.899 9 N -0.645 5.645 10 C 0.565 3.435 11 O -0.571 6.571 12 C -0.548 4.548 13 H 0.072 0.928 14 C 0.090 3.910 15 N -0.766 5.766 16 Si 0.906 3.094 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.095 3.905 21 C 0.065 3.935 22 H 0.062 0.938 23 C -0.139 4.139 24 O -0.370 6.370 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.270 0.730 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.686 1.676 -0.986 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 H 0.084 0.916 4 O -0.294 6.294 5 C -0.029 4.029 6 C -0.179 4.179 7 C 0.039 3.961 8 C -0.023 4.023 9 N -0.384 5.384 10 C 0.372 3.628 11 O -0.453 6.453 12 C -0.584 4.584 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.394 5.394 16 Si 0.730 3.270 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.030 4.030 21 C 0.007 3.993 22 H 0.080 0.920 23 C -0.197 4.197 24 O -0.289 6.289 25 H 0.116 0.884 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.168 1.069 -1.484 12.305 hybrid contribution -0.405 0.865 0.612 1.134 sum 11.762 1.934 -0.873 11.952 Atomic orbital electron populations 1.22440 0.91244 1.04981 1.02882 1.23294 0.96837 0.95259 0.84388 0.91635 1.88928 1.39249 1.67762 1.33461 1.23506 0.88256 0.96311 0.94798 1.23044 1.00765 0.97569 0.96492 1.22729 0.92002 0.90506 0.90875 1.21778 0.93130 0.90971 0.96393 1.48464 1.07297 1.27245 1.55409 1.18100 0.77864 0.87363 0.79464 1.90615 1.62490 1.44195 1.47991 1.20904 0.91303 1.02402 1.43826 0.91027 1.25692 0.97526 0.96408 0.93450 1.69978 1.06557 1.29033 1.33824 0.86460 0.78365 0.82094 0.80066 1.19196 1.20484 1.19233 1.22110 0.92663 0.94687 0.93547 1.22623 0.93101 0.87257 0.96306 0.92022 1.21699 0.99201 0.98928 0.99846 1.87762 1.36853 1.37267 1.67048 0.88440 0.93410 0.90522 0.89146 0.92298 0.89207 0.89112 0.87964 0.93236 0.91888 0.93091 0.88021 0.92211 0.91901 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 7.58 37.16 0.28 -3.06 16 2 C 0.06 1.09 3.24 -26.43 -0.09 1.00 16 3 H 0.07 1.19 6.66 -51.93 -0.35 0.84 16 4 O -0.37 -6.55 11.21 -35.23 -0.39 -6.95 16 5 C 0.05 0.65 7.73 38.27 0.30 0.94 16 6 C -0.14 -1.95 6.44 -24.94 -0.16 -2.11 16 7 C 0.08 1.36 0.97 -89.82 -0.09 1.28 16 8 C 0.10 2.01 4.62 -3.79 -0.02 1.99 16 9 N -0.65 -14.22 2.00 -174.23 -0.35 -14.57 16 10 C 0.57 15.19 5.06 -12.98 -0.07 15.12 16 11 O -0.57 -17.40 13.46 5.20 0.07 -17.33 16 12 C -0.55 -14.63 8.85 -35.63 -0.32 -14.95 16 13 H 0.07 1.73 5.76 -52.49 -0.30 1.43 16 14 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 15 N -0.77 -22.15 11.86 55.55 0.66 -21.49 16 16 Si 0.91 19.42 29.56 -169.99 -5.02 14.40 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C 0.09 1.74 5.83 -3.54 -0.02 1.72 16 21 C 0.07 1.04 3.11 -26.59 -0.08 0.96 16 22 H 0.06 1.04 6.56 -51.93 -0.34 0.70 16 23 C -0.14 -1.70 9.57 37.16 0.36 -1.35 16 24 O -0.37 -6.19 9.81 -35.23 -0.35 -6.54 16 25 H 0.10 2.29 4.64 -51.94 -0.24 2.05 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.75 5.19 -51.93 -0.27 1.48 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.09 1.19 7.84 -51.93 -0.41 0.78 16 32 H 0.10 2.23 5.00 -51.93 -0.26 1.97 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.90 5.41 -51.93 -0.28 1.62 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 296.26 15.07 4.46 4.46 Total: -1.00 -32.00 296.26 -6.30 -38.30 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.38 Total: 5.85 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 0.00 Total: 3.86 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.31 Total: -36.06 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.67 Total: -30.81 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.00 -6.30 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366196994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.239 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds