Wall clock time and date at job start Mon Mar 30 2020 01:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.90118 * 2 1 4 4 O 1.43898 * 110.07100 * 238.80972 * 2 1 3 5 5 C 1.44433 * 106.98913 * 214.15374 * 4 2 1 6 6 C 1.55108 * 103.56692 * 39.73856 * 5 4 2 7 7 C 1.53583 * 109.90847 * 121.08207 * 2 1 3 8 8 C 1.52663 * 110.33998 * 3.40728 * 7 2 1 9 9 N 1.47279 * 108.38914 * 287.88449 * 8 7 2 10 10 C 1.34778 * 121.04130 * 130.41440 * 9 8 7 11 11 O 1.21688 * 120.00331 * 5.55665 * 10 9 8 12 12 C 1.46380 * 119.99836 * 185.56359 * 10 9 8 13 13 H 1.07991 * 119.99905 * 8.37039 * 12 10 9 14 14 C 1.40040 * 119.99979 * 188.37148 * 12 10 9 15 15 N 1.30677 * 120.00242 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00372 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47060 * 59.99609 * 16 14 12 18 18 H 1.48497 * 109.47454 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46904 * 300.00161 * 16 14 12 20 20 C 1.47157 * 117.91422 * 310.40699 * 9 8 7 21 21 C 1.53277 * 108.50947 * 51.03404 * 20 9 8 22 22 H 1.08997 * 109.54912 * 67.15152 * 21 20 9 23 23 C 1.53001 * 109.51158 * 187.26997 * 21 20 9 24 24 O 1.42235 * 110.61821 * 240.44652 * 7 2 1 25 25 H 1.08989 * 109.47585 * 306.63167 * 1 2 3 26 26 H 1.09004 * 109.46951 * 66.63397 * 1 2 3 27 27 H 1.09004 * 109.47084 * 186.62446 * 1 2 3 28 28 H 1.09002 * 110.60226 * 158.25554 * 5 4 2 29 29 H 1.08998 * 110.61064 * 281.21229 * 5 4 2 30 30 H 1.09001 * 110.93102 * 205.24813 * 6 5 4 31 31 H 1.08996 * 110.93346 * 81.57321 * 6 5 4 32 32 H 1.08998 * 109.68107 * 47.61245 * 8 7 2 33 33 H 1.09002 * 109.68427 * 168.15987 * 8 7 2 34 34 H 0.96996 * 120.00340 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.63187 * 291.32678 * 20 9 8 36 36 H 1.08996 * 109.63111 * 170.74211 * 20 9 8 37 37 H 1.09004 * 109.47235 * 179.76177 * 23 21 20 38 38 H 1.09005 * 109.46506 * 59.76744 * 23 21 20 39 39 H 1.08999 * 109.46987 * 299.76692 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0238 -0.7000 -1.1562 5 6 3.2423 -1.3655 -0.7581 6 6 2.9237 -1.8852 0.6682 7 6 2.0529 -0.7455 1.2367 8 6 0.8901 -1.3271 2.0368 9 7 0.1848 -0.2194 2.7036 10 6 -1.1548 -0.0975 2.6192 11 8 -1.8113 -0.9632 2.0712 12 6 -1.8200 1.0765 3.1866 13 1 -1.2328 1.9063 3.5510 14 6 -3.2178 1.1235 3.2569 15 7 -3.9284 0.1196 2.8155 16 14 -4.0668 2.6212 3.9816 17 1 -3.7067 3.8254 3.1907 18 1 -5.5382 2.4245 3.9406 19 1 -3.6305 2.8048 5.3892 20 6 0.9886 0.7500 3.4650 21 6 2.1305 1.2447 2.5702 22 1 1.7214 1.8315 1.7478 23 6 3.0846 2.1132 3.3925 24 8 2.8409 0.1186 2.0464 25 1 -0.3634 0.6131 0.8246 26 1 -0.3633 0.4076 -0.9434 27 1 -0.3633 -1.0208 0.1186 28 1 3.4623 -2.1961 -1.4287 29 1 4.0736 -0.6610 -0.7329 30 1 3.8365 -2.0058 1.2515 31 1 2.3636 -2.8193 0.6262 32 1 0.2062 -1.8467 1.3656 33 1 1.2706 -2.0230 2.7846 34 1 -4.8966 0.1519 2.8645 35 1 1.4006 0.2679 4.3515 36 1 0.3633 1.5925 3.7601 37 1 3.8987 2.4612 2.7566 38 1 3.4921 1.5262 4.2156 39 1 2.5428 2.9709 3.7911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366196994.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:11 Heat of formation + Delta-G solvation = -127.303894 kcal Electronic energy + Delta-G solvation = -22800.888921 eV Core-core repulsion = 19515.520357 eV Total energy + Delta-G solvation = -3285.368564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.14163 -39.49447 -38.43803 -35.34237 -34.72726 -34.29070 -32.50616 -31.40579 -29.25853 -27.51615 -26.96567 -25.38752 -23.50705 -22.49874 -21.74507 -20.21044 -18.63005 -18.42721 -17.88072 -16.82167 -16.70043 -16.39233 -16.32425 -15.93917 -15.55298 -15.16842 -14.88550 -14.51535 -14.04113 -13.75340 -13.68393 -13.31938 -13.18055 -13.09978 -12.94838 -12.76533 -12.58012 -12.47093 -12.38097 -12.15112 -12.05903 -11.96834 -11.86567 -11.36648 -10.98037 -10.90802 -10.60124 -9.76980 -9.02232 -8.30028 -6.84703 1.39571 1.42157 1.53442 2.20920 2.42626 2.47195 2.68053 2.90564 3.40028 3.52081 3.64742 3.67625 3.96889 4.03492 4.16257 4.20663 4.27913 4.33646 4.47581 4.50910 4.58640 4.65728 4.69448 4.80195 4.82500 4.87496 4.97826 5.01196 5.04004 5.09487 5.31283 5.36396 5.37434 5.66306 5.83176 6.06899 6.20055 6.30741 6.87559 7.37093 8.45453 8.65824 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024354 B = 0.006994 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.441079 B = 4002.739386 C = 4595.222437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 H 0.070 0.930 4 O -0.393 6.393 5 C 0.045 3.955 6 C -0.135 4.135 7 C 0.084 3.916 8 C 0.100 3.900 9 N -0.648 5.648 10 C 0.556 3.444 11 O -0.620 6.620 12 C -0.572 4.572 13 H 0.092 0.908 14 C 0.033 3.967 15 N -0.821 5.821 16 Si 0.990 3.010 17 H -0.255 1.255 18 H -0.277 1.277 19 H -0.252 1.252 20 C 0.090 3.910 21 C 0.068 3.932 22 H 0.051 0.949 23 C -0.131 4.131 24 O -0.363 6.363 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.274 0.726 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.105 3.186 -0.228 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.088 0.912 4 O -0.313 6.313 5 C -0.030 4.030 6 C -0.173 4.173 7 C 0.043 3.957 8 C -0.023 4.023 9 N -0.385 5.385 10 C 0.363 3.637 11 O -0.507 6.507 12 C -0.608 4.608 13 H 0.110 0.890 14 C -0.182 4.182 15 N -0.450 5.450 16 Si 0.809 3.191 17 H -0.179 1.179 18 H -0.202 1.202 19 H -0.176 1.176 20 C -0.033 4.033 21 C 0.009 3.991 22 H 0.069 0.931 23 C -0.188 4.188 24 O -0.283 6.283 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.664 2.590 -0.713 14.908 hybrid contribution -1.098 0.329 0.352 1.199 sum 13.566 2.919 -0.361 13.881 Atomic orbital electron populations 1.22214 0.94059 1.02701 1.01515 1.23072 0.94435 0.95905 0.85533 0.91242 1.88903 1.41205 1.68091 1.33142 1.23813 0.86945 0.97313 0.94963 1.23102 1.01050 0.96271 0.96833 1.22656 0.91650 0.91509 0.89890 1.21854 0.93476 0.90641 0.96362 1.48292 1.06509 1.28337 1.55362 1.18355 0.79383 0.87072 0.78879 1.90568 1.64413 1.45715 1.49977 1.21428 0.92272 1.03119 1.43961 0.88968 1.26890 0.98220 0.99848 0.93267 1.70157 1.07035 1.32019 1.35802 0.85183 0.76790 0.77385 0.79725 1.17932 1.20232 1.17550 1.22331 0.93003 0.93822 0.94180 1.22698 0.93207 0.87239 0.95913 0.93107 1.21698 0.98793 0.98688 0.99656 1.87790 1.36449 1.37283 1.66758 0.91044 0.93706 0.93016 0.86242 0.90689 0.86804 0.88701 0.90735 0.92379 0.91649 0.91902 0.88495 0.90756 0.91065 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.52 7.58 71.98 0.55 -5.97 16 2 C 0.07 2.47 3.24 30.79 0.10 2.57 16 3 H 0.07 2.45 6.66 -2.39 -0.02 2.44 16 4 O -0.39 -13.28 11.21 -148.98 -1.67 -14.95 16 5 C 0.05 1.08 7.73 72.70 0.56 1.64 16 6 C -0.13 -3.38 6.44 31.75 0.20 -3.17 16 7 C 0.08 2.78 0.97 -10.27 -0.01 2.77 16 8 C 0.10 4.06 4.62 86.12 0.40 4.45 16 9 N -0.65 -29.18 2.00 -823.35 -1.65 -30.83 16 10 C 0.56 31.15 5.06 86.36 0.44 31.59 16 11 O -0.62 -40.13 13.46 -4.31 -0.06 -40.19 16 12 C -0.57 -31.18 8.85 24.83 0.22 -30.96 16 13 H 0.09 4.46 5.76 -2.92 -0.02 4.44 16 14 C 0.03 1.80 5.50 85.30 0.47 2.27 16 15 N -0.82 -49.39 11.86 21.83 0.26 -49.14 16 16 Si 0.99 39.94 29.56 68.60 2.03 41.97 16 17 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 18 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 20 C 0.09 3.24 5.83 86.35 0.50 3.74 16 21 C 0.07 2.02 3.11 30.69 0.10 2.12 16 22 H 0.05 1.65 6.56 -2.39 -0.02 1.63 16 23 C -0.13 -2.75 9.57 71.98 0.69 -2.06 16 24 O -0.36 -11.27 9.81 -148.98 -1.46 -12.73 16 25 H 0.07 3.53 4.64 -2.39 -0.01 3.52 16 26 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.05 2.52 5.19 -2.39 -0.01 2.51 16 28 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.11 2.34 8.07 -2.39 -0.02 2.32 16 31 H 0.09 2.31 7.84 -2.39 -0.02 2.29 16 32 H 0.07 3.44 5.00 -2.39 -0.01 3.43 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.27 15.06 8.29 -92.71 -0.77 14.29 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 3.55 5.41 -2.39 -0.01 3.53 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -73.00 296.26 2.72 -70.28 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 1.06 Total: 26.59 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 4.21 Total: 8.98 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -1.39 Total: -79.97 kcal Atomic # 8 Polarization: -64.68 SS G_CDS: -3.19 Total: -67.87 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -73.00 2.72 -70.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366196994.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.023 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds