Wall clock time and date at job start Mon Mar 30 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.51103 * 2 1 4 4 C 1.53289 * 109.51339 * 120.10135 * 2 1 3 5 5 N 1.47164 * 108.38284 * 172.30777 * 4 2 1 6 6 C 1.34778 * 120.98775 * 129.40924 * 5 4 2 7 7 O 1.21688 * 120.00003 * 354.78153 * 6 5 4 8 8 C 1.46372 * 119.99678 * 174.77276 * 6 5 4 9 9 H 1.07995 * 120.00349 * 5.00839 * 8 6 5 10 10 C 1.40051 * 119.99616 * 185.00434 * 8 6 5 11 11 N 1.30666 * 120.00194 * 359.97438 * 10 8 6 12 12 Si 1.86807 * 119.99883 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.46919 * 59.99670 * 12 10 8 14 14 H 1.48499 * 109.46835 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46943 * 299.99795 * 12 10 8 16 16 C 1.47165 * 118.02043 * 309.39505 * 5 4 2 17 17 C 1.53194 * 108.41437 * 50.39481 * 16 5 4 18 18 C 1.53089 * 109.42393 * 187.91783 * 17 16 5 19 19 C 1.53190 * 109.03874 * 183.24538 * 18 17 16 20 20 C 1.53098 * 109.14623 * 56.89007 * 19 18 17 21 21 O 1.42900 * 109.43324 * 302.35041 * 20 19 18 22 22 C 1.42919 * 114.09844 * 61.18008 * 21 20 19 23 23 O 1.42849 * 109.42037 * 307.94696 * 17 16 5 24 24 H 1.09006 * 109.47005 * 299.89578 * 1 2 3 25 25 H 1.08999 * 109.46758 * 179.89633 * 1 2 3 26 26 H 1.08998 * 109.47179 * 59.89497 * 1 2 3 27 27 H 1.08991 * 109.68811 * 292.03352 * 4 2 1 28 28 H 1.09004 * 109.67954 * 52.55550 * 4 2 1 29 29 H 0.97001 * 120.00303 * 180.02562 * 11 10 8 30 30 H 1.09011 * 109.67350 * 170.12475 * 16 5 4 31 31 H 1.08993 * 109.67789 * 290.62255 * 16 5 4 32 32 H 1.09002 * 109.54272 * 303.10800 * 18 17 16 33 33 H 1.08997 * 109.54364 * 63.37530 * 18 17 16 34 34 H 1.08998 * 109.52754 * 176.78959 * 19 18 17 35 35 H 1.08997 * 109.52541 * 296.99184 * 19 18 17 36 36 H 1.08995 * 109.47822 * 62.33930 * 20 19 18 37 37 H 1.08997 * 109.47926 * 182.35636 * 20 19 18 38 38 H 1.09004 * 109.48136 * 178.98744 * 22 21 20 39 39 H 1.09003 * 109.47947 * 58.96521 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 1.2500 5 7 3.5015 -0.8739 1.1348 6 6 4.3188 -0.4996 2.1390 7 8 3.8618 0.0566 3.1202 8 6 5.7560 -0.7622 2.0494 9 1 6.1730 -1.1819 1.1460 10 6 6.5903 -0.4691 3.1354 11 7 6.0859 0.0393 4.2284 12 14 8.4246 -0.8036 3.0209 13 1 9.0023 -0.0167 1.9020 14 1 9.0801 -0.4085 4.2935 15 1 8.6495 -2.2509 2.7762 16 6 4.0421 -1.4443 -0.1095 17 6 3.4302 -0.6894 -1.2938 18 6 3.8205 -1.3876 -2.5991 19 6 3.2728 -0.5808 -3.7805 20 6 3.8090 0.8511 -3.7023 21 8 3.4346 1.4314 -2.4513 22 6 3.9572 0.7468 -1.3108 23 8 2.0076 -0.6770 -1.1653 24 1 -0.3633 0.5122 0.8910 25 1 -0.3633 -1.0277 -0.0019 26 1 -0.3633 0.5155 -0.8890 27 1 1.8018 -0.1397 2.1378 28 1 1.5765 -1.7077 1.3210 29 1 6.6638 0.2426 4.9804 30 1 5.1264 -1.3327 -0.1237 31 1 3.7812 -2.5007 -0.1726 32 1 4.9065 -1.4469 -2.6703 33 1 3.3973 -2.3920 -2.6160 34 1 3.5944 -1.0397 -4.7154 35 1 2.1838 -0.5648 -3.7371 36 1 4.8957 0.8372 -3.7858 37 1 3.3895 1.4413 -4.5170 38 1 3.6419 1.2605 -0.4025 39 1 5.0459 0.7341 -1.3619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373741388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:33 Heat of formation + Delta-G solvation = -148.628448 kcal Electronic energy + Delta-G solvation = -22468.231124 eV Core-core repulsion = 19181.937858 eV Total energy + Delta-G solvation = -3286.293266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.70214 -39.48825 -38.25984 -35.29371 -35.10738 -34.54616 -33.04167 -30.96163 -29.12730 -27.46529 -26.27316 -26.21955 -23.55630 -22.49064 -21.15110 -20.60291 -18.53085 -17.92181 -17.83917 -17.23277 -16.73181 -16.46501 -16.11531 -15.95916 -15.68467 -15.21955 -14.87115 -14.48055 -14.26567 -13.70735 -13.65832 -13.42572 -13.35059 -13.11523 -13.04356 -12.95011 -12.72471 -12.56596 -12.28284 -12.10601 -12.01987 -11.89567 -11.47488 -11.29286 -11.06017 -10.91550 -10.24806 -9.85170 -9.06853 -8.32610 -6.88568 1.38436 1.41557 1.53333 2.19843 2.41495 2.51940 2.71799 2.94781 3.52751 3.65158 3.68245 3.78758 3.99047 4.04717 4.10188 4.24212 4.30018 4.34975 4.47022 4.55848 4.58872 4.70128 4.73339 4.77383 4.85188 4.92394 4.95275 5.02064 5.06119 5.16057 5.26584 5.32830 5.40424 5.63378 6.03145 6.12217 6.28108 6.34284 6.83697 7.32995 8.40426 8.62885 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.007037 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.884847 B = 3978.102414 C = 4830.831965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.079 3.921 3 H 0.041 0.959 4 C 0.091 3.909 5 N -0.648 5.648 6 C 0.543 3.457 7 O -0.630 6.630 8 C -0.567 4.567 9 H 0.095 0.905 10 C 0.030 3.970 11 N -0.822 5.822 12 Si 0.994 3.006 13 H -0.252 1.252 14 H -0.276 1.276 15 H -0.251 1.251 16 C 0.101 3.899 17 C 0.077 3.923 18 C -0.104 4.104 19 C -0.142 4.142 20 C 0.048 3.952 21 O -0.397 6.397 22 C 0.050 3.950 23 O -0.363 6.363 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.275 0.725 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 -3.131 -16.817 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.021 3.979 3 H 0.059 0.941 4 C -0.033 4.033 5 N -0.385 5.385 6 C 0.350 3.650 7 O -0.517 6.517 8 C -0.603 4.603 9 H 0.113 0.887 10 C -0.186 4.186 11 N -0.451 5.451 12 Si 0.813 3.187 13 H -0.176 1.176 14 H -0.201 1.201 15 H -0.175 1.175 16 C -0.023 4.023 17 C 0.037 3.963 18 C -0.141 4.141 19 C -0.180 4.180 20 C -0.028 4.028 21 O -0.316 6.316 22 C -0.028 4.028 23 O -0.282 6.282 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.326 -2.690 -16.221 16.776 hybrid contribution 0.870 -0.018 0.941 1.282 sum -2.455 -2.708 -15.280 15.711 Atomic orbital electron populations 1.21654 0.90201 1.03586 1.03270 1.22416 0.96716 0.94340 0.84472 0.94119 1.21985 0.82489 1.00156 0.98672 1.48147 1.05145 1.67656 1.17530 1.18681 0.87928 0.77740 0.80678 1.90546 1.78086 1.48600 1.34496 1.21419 0.90783 1.45437 1.02619 0.88738 1.26994 1.06231 0.91702 0.93627 1.70176 1.38861 1.31930 1.04142 0.85130 0.74712 0.80188 0.78721 1.17584 1.20082 1.17526 1.22211 1.00238 0.96895 0.82959 1.22501 0.82017 0.95168 0.96660 1.21622 1.02199 0.99745 0.90583 1.22077 1.01625 0.95398 0.98873 1.22897 0.99776 0.94772 0.85352 1.87912 1.75366 1.53652 1.14676 1.22879 0.98135 0.93106 0.88651 1.87859 1.20226 1.76939 1.43169 0.90244 0.90932 0.90771 0.91915 0.92024 0.91537 0.88624 0.91418 0.88536 0.89505 0.87797 0.91676 0.92108 0.87266 0.91771 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.57 71.98 0.69 -2.76 16 2 C 0.08 2.78 3.02 30.69 0.09 2.87 16 3 H 0.04 1.61 6.23 -2.39 -0.01 1.59 16 4 C 0.09 3.79 5.94 86.35 0.51 4.31 16 5 N -0.65 -30.36 2.60 -822.58 -2.14 -32.50 16 6 C 0.54 31.73 7.63 86.36 0.66 32.39 16 7 O -0.63 -42.71 14.51 -4.31 -0.06 -42.77 16 8 C -0.57 -31.47 8.85 24.83 0.22 -31.25 16 9 H 0.09 4.61 5.76 -2.91 -0.02 4.60 16 10 C 0.03 1.64 5.50 85.31 0.47 2.11 16 11 N -0.82 -50.20 11.84 21.84 0.26 -49.94 16 12 Si 0.99 40.02 29.56 68.60 2.03 42.05 16 13 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 14 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 16 C 0.10 3.72 5.17 86.32 0.45 4.17 16 17 C 0.08 2.45 0.70 -10.70 -0.01 2.44 16 18 C -0.10 -2.35 5.03 30.69 0.15 -2.20 16 19 C -0.14 -2.78 5.99 30.69 0.18 -2.60 16 20 C 0.05 1.05 6.84 72.02 0.49 1.54 16 21 O -0.40 -12.65 10.70 -142.23 -1.52 -14.17 16 22 C 0.05 1.72 5.11 71.98 0.37 2.08 16 23 O -0.36 -12.14 9.30 -142.23 -1.32 -13.46 16 24 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 2.96 7.06 -2.39 -0.02 2.94 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 30 H 0.10 3.57 5.50 -2.38 -0.01 3.55 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.47 7.84 -2.39 -0.02 1.45 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 2.71 6.08 -2.38 -0.01 2.70 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.33 305.49 2.56 -73.77 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.04 Total: 23.94 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 4.28 Total: 13.10 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.88 Total: -82.44 kcal Atomic # 8 Polarization: -67.50 SS G_CDS: -2.91 Total: -70.41 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -76.33 2.56 -73.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373741388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.860 kcal (2) G-P(sol) polarization free energy of solvation -76.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds