Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.50899 * 2 1 4 4 C 1.53290 * 109.51867 * 239.89539 * 2 1 3 5 5 N 1.47150 * 108.42122 * 187.69107 * 4 2 1 6 6 C 1.34775 * 120.98513 * 230.57552 * 5 4 2 7 7 O 1.21688 * 120.00472 * 355.34187 * 6 5 4 8 8 C 1.46378 * 119.99549 * 175.35248 * 6 5 4 9 9 H 1.07990 * 120.00356 * 7.50562 * 8 6 5 10 10 C 1.40051 * 119.99855 * 187.50477 * 8 6 5 11 11 N 1.30674 * 119.99838 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 120.00210 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46672 * 90.00385 * 12 10 8 14 14 H 1.48494 * 109.47376 * 210.00116 * 12 10 8 15 15 H 1.48497 * 109.46948 * 330.00909 * 12 10 8 16 16 C 1.47171 * 118.02253 * 50.54731 * 5 4 2 17 17 C 1.53194 * 108.37517 * 309.59427 * 16 5 4 18 18 C 1.53072 * 109.46938 * 172.24247 * 17 16 5 19 19 C 1.53197 * 109.03198 * 176.76877 * 18 17 16 20 20 C 1.53086 * 109.15678 * 303.14005 * 19 18 17 21 21 O 1.42910 * 109.45025 * 57.62828 * 20 19 18 22 22 C 1.42925 * 114.07579 * 298.81490 * 21 20 19 23 23 O 1.42862 * 109.40719 * 52.16820 * 17 16 5 24 24 H 1.09004 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47792 * 300.00068 * 1 2 3 26 26 H 1.09005 * 109.47274 * 60.00525 * 1 2 3 27 27 H 1.09001 * 109.67132 * 307.42198 * 4 2 1 28 28 H 1.09003 * 109.67806 * 67.95460 * 4 2 1 29 29 H 0.96998 * 120.00175 * 180.02562 * 11 10 8 30 30 H 1.09008 * 109.68380 * 69.31413 * 16 5 4 31 31 H 1.08991 * 109.68607 * 189.83272 * 16 5 4 32 32 H 1.09000 * 109.54698 * 296.63765 * 18 17 16 33 33 H 1.09008 * 109.54287 * 56.90371 * 18 17 16 34 34 H 1.09004 * 109.52061 * 183.24453 * 19 18 17 35 35 H 1.08990 * 109.57584 * 63.07798 * 19 18 17 36 36 H 1.09000 * 109.47917 * 297.63903 * 20 19 18 37 37 H 1.08998 * 109.48135 * 177.62230 * 20 19 18 38 38 H 1.08994 * 109.48261 * 301.07568 * 22 21 20 39 39 H 1.08995 * 109.48214 * 181.03008 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0422 -0.7247 -1.2499 5 7 3.5016 -0.8743 -1.1355 6 6 4.3183 -0.5004 -2.1402 7 8 3.8488 -0.1106 -3.1930 8 6 5.7702 -0.5635 -1.9651 9 1 6.1881 -1.0214 -1.0809 10 6 6.6174 -0.0301 -2.9444 11 7 6.1118 0.5244 -4.0142 12 14 8.4703 -0.1099 -2.7207 13 1 8.9866 -1.3695 -3.3141 14 1 9.1012 1.0513 -3.3979 15 1 8.7959 -0.0753 -1.2723 16 6 4.0427 -1.4437 0.1091 17 6 3.4316 -0.6866 1.2923 18 6 3.8245 -1.3798 2.5993 19 6 3.2765 -0.5700 3.7786 20 6 3.8092 0.8627 3.6949 21 8 3.4324 1.4381 2.4422 22 6 3.9560 0.7507 1.3038 23 8 2.0086 -0.6763 1.1653 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.5769 -1.7079 -1.3205 28 1 1.8017 -0.1398 -2.1377 29 1 6.6986 0.8935 -4.6927 30 1 3.7806 -2.4998 0.1740 31 1 5.1270 -1.3332 0.1223 32 1 3.4032 -2.3849 2.6200 33 1 4.9108 -1.4368 2.6695 34 1 3.6005 -1.0249 4.7147 35 1 2.1874 -0.5567 3.7378 36 1 4.8960 0.8518 3.7774 37 1 3.3890 1.4549 4.5078 38 1 5.0447 0.7400 1.3546 39 1 3.6393 1.2605 0.3940 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373741390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = -124.830124 kcal Electronic energy + Delta-G solvation = -22511.875634 eV Core-core repulsion = 19226.614341 eV Total energy + Delta-G solvation = -3285.261293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29745 -37.89217 -36.54440 -33.85612 -33.40461 -32.52381 -31.84185 -29.58446 -27.27398 -25.89721 -25.04957 -24.56072 -22.27805 -21.07449 -19.59851 -18.99745 -16.68887 -16.53712 -16.09381 -15.80759 -15.26330 -14.93513 -14.59929 -14.45820 -14.30137 -13.63438 -13.48626 -12.99945 -12.58401 -12.48319 -12.29914 -12.03081 -11.84984 -11.62531 -11.48755 -11.30262 -11.25945 -11.00566 -10.91048 -10.79636 -10.34050 -10.30568 -10.13679 -9.93963 -9.57470 -8.97704 -8.87867 -7.67585 -7.24436 -6.28001 -4.73343 3.08458 3.15478 3.17985 3.87190 4.00828 4.14873 4.38275 4.48005 4.89569 4.97319 5.02726 5.05289 5.27257 5.41618 5.47043 5.55642 5.59073 5.68749 5.72612 5.74664 5.85331 5.92397 5.95861 6.03032 6.09555 6.19355 6.26034 6.29544 6.34668 6.40881 6.46018 6.61601 7.33522 7.36674 7.45007 7.69298 8.01909 8.24693 8.93909 9.32347 10.48579 10.66883 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.007340 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.769425 B = 3813.909529 C = 4705.933882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.062 0.938 4 C 0.093 3.907 5 N -0.645 5.645 6 C 0.561 3.439 7 O -0.575 6.575 8 C -0.545 4.545 9 H 0.072 0.928 10 C 0.089 3.911 11 N -0.767 5.767 12 Si 0.906 3.094 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.264 1.264 16 C 0.102 3.898 17 C 0.075 3.925 18 C -0.106 4.106 19 C -0.150 4.150 20 C 0.059 3.941 21 O -0.377 6.377 22 C 0.043 3.957 23 O -0.365 6.365 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.270 0.730 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -1.863 13.791 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 H 0.080 0.920 4 C -0.032 4.032 5 N -0.383 5.383 6 C 0.367 3.633 7 O -0.457 6.457 8 C -0.581 4.581 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.395 5.395 12 Si 0.730 3.270 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.189 1.189 16 C -0.022 4.022 17 C 0.035 3.965 18 C -0.143 4.143 19 C -0.187 4.187 20 C -0.018 4.018 21 O -0.296 6.296 22 C -0.034 4.034 23 O -0.285 6.285 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.345 -1.461 13.098 13.877 hybrid contribution 1.275 -0.296 -0.018 1.309 sum -3.071 -1.756 13.080 13.549 Atomic orbital electron populations 1.21668 0.93249 1.02436 1.02133 1.22509 0.94480 0.96057 0.85705 0.91982 1.21863 0.83649 0.99639 0.98017 1.48309 1.04376 1.68602 1.17039 1.18272 0.86962 0.76766 0.81329 1.90599 1.76934 1.51543 1.26624 1.20913 0.89204 1.41404 1.06613 0.91028 1.25717 1.00254 0.93086 0.94104 1.69997 1.36133 1.26987 1.06388 0.86398 0.82884 0.78418 0.79280 1.19638 1.20358 1.18858 1.22007 1.00446 0.95857 0.83937 1.22406 0.82617 0.95793 0.95735 1.21529 1.00848 0.99496 0.92475 1.22103 1.02524 0.96100 0.98006 1.22547 0.98530 0.93900 0.86838 1.87944 1.74915 1.53092 1.13616 1.23129 0.98228 0.92765 0.89256 1.87846 1.19683 1.77241 1.43712 0.92138 0.92115 0.91141 0.93346 0.89174 0.91956 0.92917 0.88141 0.90690 0.90367 0.91319 0.90417 0.93539 0.89409 0.92004 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.57 37.16 0.36 -1.55 16 2 C 0.07 1.23 3.02 -26.58 -0.08 1.15 16 3 H 0.06 1.17 6.21 -51.93 -0.32 0.85 16 4 C 0.09 1.87 5.91 -3.54 -0.02 1.85 16 5 N -0.64 -14.66 2.59 -173.99 -0.45 -15.11 16 6 C 0.56 15.68 7.62 -12.99 -0.10 15.58 16 7 O -0.57 -18.37 14.55 5.20 0.08 -18.29 16 8 C -0.54 -14.83 8.86 -35.63 -0.32 -15.14 16 9 H 0.07 1.76 5.73 -52.49 -0.30 1.46 16 10 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 11 N -0.77 -22.54 11.86 55.55 0.66 -21.88 16 12 Si 0.91 19.59 29.56 -169.99 -5.02 14.57 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 16 C 0.10 1.93 5.22 -3.58 -0.02 1.91 16 17 C 0.08 1.25 0.71 -90.48 -0.06 1.18 16 18 C -0.11 -1.38 5.03 -26.59 -0.13 -1.52 16 19 C -0.15 -1.76 5.98 -26.58 -0.16 -1.92 16 20 C 0.06 0.74 6.84 37.20 0.25 0.99 16 21 O -0.38 -6.25 10.70 -42.41 -0.45 -6.70 16 22 C 0.04 0.75 5.10 37.16 0.19 0.94 16 23 O -0.37 -6.35 9.31 -42.41 -0.39 -6.75 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.99 7.11 -51.93 -0.37 1.62 16 29 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 30 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.10 1.92 5.40 -51.93 -0.28 1.64 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.01 7.84 -51.93 -0.41 0.61 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.10 2.10 6.06 -51.93 -0.31 1.78 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -33.26 305.45 -6.95 -40.21 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.78 Total: 3.56 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.19 Total: 5.80 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.21 Total: -36.99 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.77 Total: -31.74 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.26 -6.95 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373741390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.615 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds