Wall clock time and date at job start Mon Mar 30 2020 01:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.50899 * 2 1 4 4 C 1.53290 * 109.51867 * 239.89539 * 2 1 3 5 5 N 1.47150 * 108.42122 * 187.69107 * 4 2 1 6 6 C 1.34775 * 120.98513 * 230.57552 * 5 4 2 7 7 O 1.21688 * 120.00472 * 355.34187 * 6 5 4 8 8 C 1.46378 * 119.99549 * 175.35248 * 6 5 4 9 9 H 1.07990 * 120.00356 * 7.50562 * 8 6 5 10 10 C 1.40051 * 119.99855 * 187.50477 * 8 6 5 11 11 N 1.30674 * 119.99838 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 120.00210 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46672 * 90.00385 * 12 10 8 14 14 H 1.48494 * 109.47376 * 210.00116 * 12 10 8 15 15 H 1.48497 * 109.46948 * 330.00909 * 12 10 8 16 16 C 1.47171 * 118.02253 * 50.54731 * 5 4 2 17 17 C 1.53194 * 108.37517 * 309.59427 * 16 5 4 18 18 C 1.53072 * 109.46938 * 172.24247 * 17 16 5 19 19 C 1.53197 * 109.03198 * 176.76877 * 18 17 16 20 20 C 1.53086 * 109.15678 * 303.14005 * 19 18 17 21 21 O 1.42910 * 109.45025 * 57.62828 * 20 19 18 22 22 C 1.42925 * 114.07579 * 298.81490 * 21 20 19 23 23 O 1.42862 * 109.40719 * 52.16820 * 17 16 5 24 24 H 1.09004 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47792 * 300.00068 * 1 2 3 26 26 H 1.09005 * 109.47274 * 60.00525 * 1 2 3 27 27 H 1.09001 * 109.67132 * 307.42198 * 4 2 1 28 28 H 1.09003 * 109.67806 * 67.95460 * 4 2 1 29 29 H 0.96998 * 120.00175 * 180.02562 * 11 10 8 30 30 H 1.09008 * 109.68380 * 69.31413 * 16 5 4 31 31 H 1.08991 * 109.68607 * 189.83272 * 16 5 4 32 32 H 1.09000 * 109.54698 * 296.63765 * 18 17 16 33 33 H 1.09008 * 109.54287 * 56.90371 * 18 17 16 34 34 H 1.09004 * 109.52061 * 183.24453 * 19 18 17 35 35 H 1.08990 * 109.57584 * 63.07798 * 19 18 17 36 36 H 1.09000 * 109.47917 * 297.63903 * 20 19 18 37 37 H 1.08998 * 109.48135 * 177.62230 * 20 19 18 38 38 H 1.08994 * 109.48261 * 301.07568 * 22 21 20 39 39 H 1.08995 * 109.48214 * 181.03008 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0422 -0.7247 -1.2499 5 7 3.5016 -0.8743 -1.1355 6 6 4.3183 -0.5004 -2.1402 7 8 3.8488 -0.1106 -3.1930 8 6 5.7702 -0.5635 -1.9651 9 1 6.1881 -1.0214 -1.0809 10 6 6.6174 -0.0301 -2.9444 11 7 6.1118 0.5244 -4.0142 12 14 8.4703 -0.1099 -2.7207 13 1 8.9866 -1.3695 -3.3141 14 1 9.1012 1.0513 -3.3979 15 1 8.7959 -0.0753 -1.2723 16 6 4.0427 -1.4437 0.1091 17 6 3.4316 -0.6866 1.2923 18 6 3.8245 -1.3798 2.5993 19 6 3.2765 -0.5700 3.7786 20 6 3.8092 0.8627 3.6949 21 8 3.4324 1.4381 2.4422 22 6 3.9560 0.7507 1.3038 23 8 2.0086 -0.6763 1.1653 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.5769 -1.7079 -1.3205 28 1 1.8017 -0.1398 -2.1377 29 1 6.6986 0.8935 -4.6927 30 1 3.7806 -2.4998 0.1740 31 1 5.1270 -1.3332 0.1223 32 1 3.4032 -2.3849 2.6200 33 1 4.9108 -1.4368 2.6695 34 1 3.6005 -1.0249 4.7147 35 1 2.1874 -0.5567 3.7378 36 1 4.8960 0.8518 3.7774 37 1 3.3890 1.4549 4.5078 38 1 5.0447 0.7400 1.3546 39 1 3.6393 1.2605 0.3940 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373741390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:37 Heat of formation + Delta-G solvation = -148.422718 kcal Electronic energy + Delta-G solvation = -22512.898685 eV Core-core repulsion = 19226.614341 eV Total energy + Delta-G solvation = -3286.284345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69984 -39.48393 -38.25857 -35.29202 -35.10379 -34.54897 -33.03658 -30.94744 -29.13067 -27.47083 -26.27572 -26.20453 -23.55233 -22.49300 -21.15100 -20.59028 -18.53380 -17.92770 -17.82788 -17.22962 -16.72479 -16.43943 -16.11323 -15.99902 -15.67261 -15.22353 -14.84522 -14.52243 -14.19284 -13.73478 -13.65596 -13.44832 -13.32433 -13.12492 -13.05014 -12.94188 -12.75482 -12.56380 -12.26319 -12.07357 -12.00556 -11.88469 -11.47030 -11.28899 -11.04948 -10.94923 -10.24000 -9.84215 -9.07271 -8.33176 -6.88184 1.38474 1.39706 1.54762 2.19493 2.41792 2.52099 2.71733 2.95977 3.53083 3.65911 3.69029 3.79414 3.99359 4.04391 4.10485 4.25432 4.30949 4.35643 4.47681 4.56139 4.59243 4.70484 4.73159 4.78278 4.85379 4.92733 4.95514 5.02115 5.06524 5.16388 5.26913 5.33513 5.40775 5.63097 6.03497 6.12850 6.27989 6.34966 6.83931 7.32775 8.40157 8.62804 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.007340 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.769425 B = 3813.909529 C = 4705.933882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.079 3.921 3 H 0.041 0.959 4 C 0.092 3.908 5 N -0.648 5.648 6 C 0.543 3.457 7 O -0.631 6.631 8 C -0.565 4.565 9 H 0.095 0.905 10 C 0.030 3.970 11 N -0.823 5.823 12 Si 0.993 3.007 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.243 1.243 16 C 0.099 3.901 17 C 0.078 3.922 18 C -0.104 4.104 19 C -0.142 4.142 20 C 0.048 3.952 21 O -0.397 6.397 22 C 0.050 3.950 23 O -0.363 6.363 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.275 0.725 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 -2.997 16.897 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.021 3.979 3 H 0.059 0.941 4 C -0.032 4.032 5 N -0.384 5.384 6 C 0.350 3.650 7 O -0.518 6.518 8 C -0.601 4.601 9 H 0.113 0.887 10 C -0.186 4.186 11 N -0.452 5.452 12 Si 0.812 3.188 13 H -0.187 1.187 14 H -0.200 1.200 15 H -0.166 1.166 16 C -0.024 4.024 17 C 0.037 3.963 18 C -0.142 4.142 19 C -0.180 4.180 20 C -0.028 4.028 21 O -0.316 6.316 22 C -0.027 4.027 23 O -0.282 6.282 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.310 -2.622 16.280 16.819 hybrid contribution 0.875 0.056 -0.934 1.281 sum -2.435 -2.566 15.345 15.748 Atomic orbital electron populations 1.21653 0.90185 1.03587 1.03284 1.22419 0.96707 0.94368 0.84435 0.94087 1.21979 0.82515 1.00151 0.98578 1.48154 1.05144 1.67741 1.17397 1.18699 0.88192 0.76544 0.81567 1.90545 1.78031 1.54054 1.29144 1.21420 0.89306 1.41639 1.07737 0.88699 1.26990 1.06547 0.91825 0.93189 1.70179 1.38782 1.28382 1.07857 0.85084 0.74707 0.78645 0.80362 1.18670 1.19966 1.16599 1.22232 1.00416 0.96770 0.83017 1.22494 0.81969 0.95206 0.96643 1.21621 1.02172 0.99767 0.90595 1.22073 1.01635 0.95377 0.98882 1.22894 0.99756 0.94819 0.85335 1.87916 1.75238 1.53793 1.14693 1.22872 0.98151 0.93006 0.88648 1.87862 1.20244 1.76956 1.43153 0.90940 0.90743 0.90245 0.92117 0.92009 0.91553 0.91438 0.88471 0.89511 0.88551 0.87820 0.91672 0.92138 0.87286 0.91826 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.57 71.98 0.69 -2.76 16 2 C 0.08 2.78 3.02 30.69 0.09 2.88 16 3 H 0.04 1.62 6.21 -2.38 -0.01 1.61 16 4 C 0.09 3.83 5.91 86.35 0.51 4.34 16 5 N -0.65 -30.32 2.59 -822.59 -2.13 -32.46 16 6 C 0.54 31.72 7.62 86.36 0.66 32.38 16 7 O -0.63 -42.77 14.55 -4.31 -0.06 -42.83 16 8 C -0.56 -31.28 8.86 24.83 0.22 -31.06 16 9 H 0.10 4.62 5.73 -2.92 -0.02 4.61 16 10 C 0.03 1.63 5.50 85.30 0.47 2.10 16 11 N -0.82 -50.20 11.86 21.84 0.26 -49.94 16 12 Si 0.99 39.99 29.56 68.60 2.03 42.01 16 13 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 14 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 15 H -0.24 -8.86 7.11 99.48 0.71 -8.16 16 16 C 0.10 3.67 5.22 86.32 0.45 4.12 16 17 C 0.08 2.47 0.71 -10.70 -0.01 2.46 16 18 C -0.10 -2.36 5.03 30.68 0.15 -2.21 16 19 C -0.14 -2.80 5.98 30.69 0.18 -2.61 16 20 C 0.05 1.05 6.84 72.01 0.49 1.55 16 21 O -0.40 -12.73 10.70 -142.11 -1.52 -14.26 16 22 C 0.05 1.76 5.10 71.98 0.37 2.13 16 23 O -0.36 -12.17 9.31 -142.11 -1.32 -13.49 16 24 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.06 2.91 7.11 -2.39 -0.02 2.90 16 29 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.10 3.63 5.40 -2.39 -0.01 3.61 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.48 7.84 -2.39 -0.02 1.46 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 2.75 6.06 -2.39 -0.01 2.73 16 Total: -1.00 -76.26 305.45 2.57 -73.69 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 1.04 Total: 23.96 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 4.28 Total: 13.30 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.87 Total: -82.40 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -2.91 Total: -70.57 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -76.26 2.57 -73.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373741390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.730 kcal (2) G-P(sol) polarization free energy of solvation -76.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds