Wall clock time and date at job start Mon Mar 30 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.50923 * 2 1 4 4 C 1.53286 * 109.51022 * 239.89791 * 2 1 3 5 5 N 1.47163 * 108.41897 * 187.69962 * 4 2 1 6 6 C 1.34767 * 120.99770 * 230.56759 * 5 4 2 7 7 O 1.21688 * 120.00028 * 5.22466 * 6 5 4 8 8 C 1.46374 * 120.00014 * 185.22363 * 6 5 4 9 9 H 1.08000 * 120.00378 * 354.99998 * 8 6 5 10 10 C 1.40048 * 119.99931 * 174.71774 * 8 6 5 11 11 N 1.30674 * 119.99988 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00209 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47030 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47411 * 120.00013 * 12 10 8 15 15 H 1.48500 * 109.47169 * 240.00332 * 12 10 8 16 16 C 1.47175 * 118.00352 * 50.83940 * 5 4 2 17 17 C 1.53658 * 108.12854 * 309.22073 * 16 5 4 18 18 C 1.53088 * 109.56560 * 292.39096 * 17 16 5 19 19 C 1.53189 * 109.04409 * 183.27220 * 18 17 16 20 20 C 1.53086 * 109.14772 * 56.88068 * 19 18 17 21 21 O 1.42910 * 109.43151 * 302.33230 * 20 19 18 22 22 C 1.42919 * 114.08764 * 61.19563 * 21 20 19 23 23 O 1.42860 * 109.31852 * 52.45945 * 17 16 5 24 24 H 1.09002 * 109.46784 * 180.10051 * 1 2 3 25 25 H 1.09001 * 109.46978 * 300.10049 * 1 2 3 26 26 H 1.08994 * 109.46810 * 60.10164 * 1 2 3 27 27 H 1.08996 * 109.67545 * 67.97378 * 4 2 1 28 28 H 1.08992 * 109.67964 * 307.43381 * 4 2 1 29 29 H 0.97010 * 119.99982 * 179.97438 * 11 10 8 30 30 H 1.08993 * 109.68661 * 69.00934 * 16 5 4 31 31 H 1.09006 * 109.68214 * 189.56616 * 16 5 4 32 32 H 1.09003 * 109.54144 * 303.14246 * 18 17 16 33 33 H 1.09000 * 109.53967 * 63.30947 * 18 17 16 34 34 H 1.09004 * 109.52138 * 176.78500 * 19 18 17 35 35 H 1.09004 * 109.52609 * 296.91297 * 19 18 17 36 36 H 1.08995 * 109.47972 * 62.32344 * 20 19 18 37 37 H 1.09001 * 109.47944 * 182.34563 * 20 19 18 38 38 H 1.09001 * 109.47370 * 178.99599 * 22 21 20 39 39 H 1.08995 * 109.48412 * 58.97696 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5015 -0.8745 -1.1356 6 6 4.3185 -0.5010 -2.1402 7 8 3.8614 0.0552 -3.1213 8 6 5.7556 -0.7642 -2.0512 9 1 6.1728 -1.1840 -1.1478 10 6 6.5887 -0.4773 -3.1397 11 7 6.0832 0.0259 -4.2346 12 14 8.4227 -0.8139 -3.0265 13 1 8.7404 -1.3805 -1.6911 14 1 8.8141 -1.7835 -4.0809 15 1 9.1714 0.4542 -3.2175 16 6 4.0418 -1.4503 0.1065 17 6 3.4315 -0.6871 1.2923 18 6 3.9562 0.7511 1.3010 19 6 3.4054 1.4767 2.5326 20 6 3.8046 0.7027 3.7916 21 8 3.3086 -0.6347 3.7048 22 6 3.8258 -1.3780 2.5991 23 8 2.0086 -0.6762 1.1654 24 1 -0.3633 -1.0277 0.0018 25 1 -0.3633 0.5154 0.8891 26 1 -0.3633 0.5122 -0.8909 27 1 1.8018 -0.1395 -2.1376 28 1 1.5766 -1.7077 -1.3208 29 1 6.6604 0.2250 -4.9885 30 1 3.7751 -2.5053 0.1685 31 1 5.1266 -1.3440 0.1190 32 1 5.0454 0.7416 1.3402 33 1 3.6284 1.2642 0.3968 34 1 3.8195 2.4840 2.5774 35 1 2.3187 1.5321 2.4671 36 1 4.8910 0.6827 3.8768 37 1 3.3802 1.1915 4.6686 38 1 3.4141 -2.3872 2.6152 39 1 4.9123 -1.4275 2.6706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373741392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:40 Heat of formation + Delta-G solvation = -124.533634 kcal Electronic energy + Delta-G solvation = -22459.829004 eV Core-core repulsion = 19174.580568 eV Total energy + Delta-G solvation = -3285.248436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31264 -37.99184 -36.59130 -33.57660 -33.27948 -32.48737 -32.19879 -29.66749 -27.28067 -25.91404 -24.98849 -24.56710 -22.12614 -21.33146 -19.58887 -18.91469 -16.88626 -16.39857 -16.06142 -15.77774 -15.38343 -14.92029 -14.80588 -14.45110 -14.32279 -13.66629 -13.48211 -12.85413 -12.61600 -12.49457 -12.30287 -12.05409 -11.80757 -11.68145 -11.53256 -11.39489 -11.18009 -11.03296 -10.89351 -10.66771 -10.40585 -10.31529 -10.15902 -9.96243 -9.35244 -9.17770 -8.92093 -7.68036 -7.23932 -6.28178 -4.73498 3.06651 3.15145 3.18732 3.75247 4.00561 4.13782 4.38751 4.48223 4.90175 4.98007 5.07176 5.08241 5.26595 5.38438 5.44893 5.49673 5.55734 5.64167 5.70898 5.75214 5.79836 5.87669 5.94695 6.04368 6.14670 6.16026 6.25830 6.28857 6.37772 6.42849 6.48936 6.62013 7.26587 7.36413 7.44731 7.65276 8.02233 8.25122 8.93757 9.32790 10.48410 10.66861 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.007012 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.813442 B = 3992.188282 C = 4858.890936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 H 0.060 0.940 4 C 0.093 3.907 5 N -0.642 5.642 6 C 0.561 3.439 7 O -0.576 6.576 8 C -0.543 4.543 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.767 5.767 12 Si 0.906 3.094 13 H -0.263 1.263 14 H -0.275 1.275 15 H -0.276 1.276 16 C 0.104 3.896 17 C 0.073 3.927 18 C -0.142 4.142 19 C -0.151 4.151 20 C 0.062 3.938 21 O -0.375 6.375 22 C 0.080 3.920 23 O -0.363 6.363 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.269 0.731 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -0.116 12.897 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 H 0.077 0.923 4 C -0.032 4.032 5 N -0.380 5.380 6 C 0.367 3.633 7 O -0.458 6.458 8 C -0.580 4.580 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.395 5.395 12 Si 0.730 3.270 13 H -0.187 1.187 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.021 4.021 17 C 0.032 3.968 18 C -0.180 4.180 19 C -0.188 4.188 20 C -0.015 4.015 21 O -0.293 6.293 22 C 0.002 3.998 23 O -0.282 6.282 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.194 0.107 12.390 13.081 hybrid contribution 1.281 0.058 -0.412 1.347 sum -2.913 0.165 11.977 12.328 Atomic orbital electron populations 1.21684 0.93305 1.02609 1.02001 1.22509 0.94366 0.95951 0.86048 0.92252 1.21843 0.83708 0.99604 0.98016 1.48236 1.04308 1.68276 1.17203 1.18264 0.86740 0.77966 0.80327 1.90596 1.76990 1.46221 1.32038 1.20965 0.90647 1.45146 1.01217 0.90994 1.25727 1.00090 0.92816 0.94581 1.70021 1.36025 1.30749 1.02725 0.86342 0.82860 0.78620 0.79147 1.18704 1.20074 1.20093 1.22049 1.00284 0.95732 0.84083 1.22569 0.82530 0.95678 0.95985 1.22070 1.01222 0.95913 0.98800 1.22110 1.02301 0.99089 0.95332 1.22554 0.97963 0.83209 0.97804 1.87935 1.69794 1.24420 1.47145 1.22515 0.98058 0.95478 0.83718 1.87909 1.19687 1.77273 1.43340 0.91987 0.92219 0.91178 0.89194 0.93270 0.92050 0.92946 0.88278 0.90760 0.90286 0.91303 0.90914 0.93403 0.89302 0.88215 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.57 37.16 0.36 -1.53 16 2 C 0.07 1.19 3.02 -26.58 -0.08 1.11 16 3 H 0.06 1.07 6.19 -51.93 -0.32 0.75 16 4 C 0.09 1.86 5.94 -3.53 -0.02 1.84 16 5 N -0.64 -14.54 2.59 -173.70 -0.45 -14.99 16 6 C 0.56 15.67 7.63 -12.99 -0.10 15.57 16 7 O -0.58 -18.37 14.51 5.20 0.08 -18.30 16 8 C -0.54 -14.82 8.86 -35.63 -0.32 -15.13 16 9 H 0.07 1.78 5.76 -52.49 -0.30 1.48 16 10 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 11 N -0.77 -22.56 11.84 55.55 0.66 -21.91 16 12 Si 0.91 19.59 29.56 -169.99 -5.02 14.57 16 13 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 C 0.10 1.94 5.21 -3.33 -0.02 1.92 16 17 C 0.07 1.20 0.71 -90.24 -0.06 1.13 16 18 C -0.14 -2.30 4.35 -26.59 -0.12 -2.41 16 19 C -0.15 -2.02 5.98 -26.59 -0.16 -2.18 16 20 C 0.06 0.75 6.84 37.20 0.25 1.01 16 21 O -0.37 -5.47 10.71 -42.20 -0.45 -5.92 16 22 C 0.08 1.11 5.80 37.15 0.22 1.33 16 23 O -0.36 -6.28 9.31 -42.20 -0.39 -6.67 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.09 1.98 7.06 -51.93 -0.37 1.61 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.89 5.50 -51.93 -0.29 1.60 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.49 6.04 -51.93 -0.31 1.18 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.04 7.85 -51.93 -0.41 0.64 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -33.47 305.48 -6.91 -40.37 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.78 Total: 3.29 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.14 Total: 4.95 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.21 Total: -36.90 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.77 Total: -30.89 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.47 -6.91 -40.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373741392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.162 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds