Wall clock time and date at job start Mon Mar 30 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.50923 * 2 1 4 4 C 1.53286 * 109.51022 * 239.89791 * 2 1 3 5 5 N 1.47163 * 108.41897 * 187.69962 * 4 2 1 6 6 C 1.34767 * 120.99770 * 230.56759 * 5 4 2 7 7 O 1.21688 * 120.00028 * 5.22466 * 6 5 4 8 8 C 1.46374 * 120.00014 * 185.22363 * 6 5 4 9 9 H 1.08000 * 120.00378 * 354.99998 * 8 6 5 10 10 C 1.40048 * 119.99931 * 174.71774 * 8 6 5 11 11 N 1.30674 * 119.99988 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00209 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47030 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47411 * 120.00013 * 12 10 8 15 15 H 1.48500 * 109.47169 * 240.00332 * 12 10 8 16 16 C 1.47175 * 118.00352 * 50.83940 * 5 4 2 17 17 C 1.53658 * 108.12854 * 309.22073 * 16 5 4 18 18 C 1.53088 * 109.56560 * 292.39096 * 17 16 5 19 19 C 1.53189 * 109.04409 * 183.27220 * 18 17 16 20 20 C 1.53086 * 109.14772 * 56.88068 * 19 18 17 21 21 O 1.42910 * 109.43151 * 302.33230 * 20 19 18 22 22 C 1.42919 * 114.08764 * 61.19563 * 21 20 19 23 23 O 1.42860 * 109.31852 * 52.45945 * 17 16 5 24 24 H 1.09002 * 109.46784 * 180.10051 * 1 2 3 25 25 H 1.09001 * 109.46978 * 300.10049 * 1 2 3 26 26 H 1.08994 * 109.46810 * 60.10164 * 1 2 3 27 27 H 1.08996 * 109.67545 * 67.97378 * 4 2 1 28 28 H 1.08992 * 109.67964 * 307.43381 * 4 2 1 29 29 H 0.97010 * 119.99982 * 179.97438 * 11 10 8 30 30 H 1.08993 * 109.68661 * 69.00934 * 16 5 4 31 31 H 1.09006 * 109.68214 * 189.56616 * 16 5 4 32 32 H 1.09003 * 109.54144 * 303.14246 * 18 17 16 33 33 H 1.09000 * 109.53967 * 63.30947 * 18 17 16 34 34 H 1.09004 * 109.52138 * 176.78500 * 19 18 17 35 35 H 1.09004 * 109.52609 * 296.91297 * 19 18 17 36 36 H 1.08995 * 109.47972 * 62.32344 * 20 19 18 37 37 H 1.09001 * 109.47944 * 182.34563 * 20 19 18 38 38 H 1.09001 * 109.47370 * 178.99599 * 22 21 20 39 39 H 1.08995 * 109.48412 * 58.97696 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5015 -0.8745 -1.1356 6 6 4.3185 -0.5010 -2.1402 7 8 3.8614 0.0552 -3.1213 8 6 5.7556 -0.7642 -2.0512 9 1 6.1728 -1.1840 -1.1478 10 6 6.5887 -0.4773 -3.1397 11 7 6.0832 0.0259 -4.2346 12 14 8.4227 -0.8139 -3.0265 13 1 8.7404 -1.3805 -1.6911 14 1 8.8141 -1.7835 -4.0809 15 1 9.1714 0.4542 -3.2175 16 6 4.0418 -1.4503 0.1065 17 6 3.4315 -0.6871 1.2923 18 6 3.9562 0.7511 1.3010 19 6 3.4054 1.4767 2.5326 20 6 3.8046 0.7027 3.7916 21 8 3.3086 -0.6347 3.7048 22 6 3.8258 -1.3780 2.5991 23 8 2.0086 -0.6762 1.1654 24 1 -0.3633 -1.0277 0.0018 25 1 -0.3633 0.5154 0.8891 26 1 -0.3633 0.5122 -0.8909 27 1 1.8018 -0.1395 -2.1376 28 1 1.5766 -1.7077 -1.3208 29 1 6.6604 0.2250 -4.9885 30 1 3.7751 -2.5053 0.1685 31 1 5.1266 -1.3440 0.1190 32 1 5.0454 0.7416 1.3402 33 1 3.6284 1.2642 0.3968 34 1 3.8195 2.4840 2.5774 35 1 2.3187 1.5321 2.4671 36 1 4.8910 0.6827 3.8768 37 1 3.3802 1.1915 4.6686 38 1 3.4141 -2.3872 2.6152 39 1 4.9123 -1.4275 2.6706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373741392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:39 Heat of formation + Delta-G solvation = -148.171955 kcal Electronic energy + Delta-G solvation = -22460.854039 eV Core-core repulsion = 19174.580568 eV Total energy + Delta-G solvation = -3286.273471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68698 -39.49841 -38.30377 -35.27015 -34.86867 -34.39097 -33.41251 -30.97843 -29.13084 -27.41919 -26.32757 -26.09287 -23.37917 -22.72151 -21.29473 -20.41486 -18.64145 -17.91764 -17.66263 -17.15837 -16.79695 -16.35575 -16.15434 -15.95952 -15.85551 -15.31883 -14.83421 -14.49218 -13.97806 -13.89950 -13.75851 -13.41891 -13.21914 -13.10732 -13.10045 -12.92586 -12.79593 -12.65620 -12.22373 -12.07092 -12.02576 -11.83318 -11.66527 -11.19291 -11.00097 -10.80988 -10.37204 -9.84134 -9.07065 -8.33438 -6.88503 1.37761 1.38351 1.55866 2.19199 2.41101 2.48564 2.72316 3.04405 3.52094 3.66266 3.72258 3.82051 3.92695 4.00074 4.09356 4.23689 4.34034 4.39709 4.47082 4.50642 4.58413 4.66968 4.73574 4.75726 4.81100 4.90930 4.93946 4.98450 5.01684 5.16914 5.25719 5.28785 5.33282 5.63582 6.04168 6.17644 6.28780 6.33274 6.83698 7.33505 8.40439 8.62667 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.007012 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.813442 B = 3992.188282 C = 4858.890936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.079 3.921 3 H 0.045 0.955 4 C 0.090 3.910 5 N -0.644 5.644 6 C 0.544 3.456 7 O -0.631 6.631 8 C -0.564 4.564 9 H 0.095 0.905 10 C 0.029 3.971 11 N -0.823 5.823 12 Si 0.994 3.006 13 H -0.241 1.241 14 H -0.270 1.270 15 H -0.270 1.270 16 C 0.100 3.900 17 C 0.075 3.925 18 C -0.141 4.141 19 C -0.144 4.144 20 C 0.060 3.940 21 O -0.387 6.387 22 C 0.083 3.917 23 O -0.363 6.363 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.274 0.726 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 -0.866 15.648 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.020 3.980 3 H 0.063 0.937 4 C -0.034 4.034 5 N -0.381 5.381 6 C 0.351 3.649 7 O -0.519 6.519 8 C -0.600 4.600 9 H 0.112 0.888 10 C -0.186 4.186 11 N -0.452 5.452 12 Si 0.813 3.187 13 H -0.164 1.164 14 H -0.195 1.195 15 H -0.195 1.195 16 C -0.024 4.024 17 C 0.034 3.966 18 C -0.179 4.179 19 C -0.181 4.181 20 C -0.017 4.017 21 O -0.305 6.305 22 C 0.006 3.994 23 O -0.282 6.282 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.134 -0.667 15.212 15.546 hybrid contribution 0.875 0.301 -1.263 1.566 sum -2.259 -0.366 13.949 14.135 Atomic orbital electron populations 1.21673 0.90354 1.03572 1.03277 1.22427 0.96503 0.94531 0.84494 0.93680 1.21975 0.82550 1.00083 0.98745 1.48072 1.05072 1.67427 1.17522 1.18678 0.87938 0.77712 0.80621 1.90543 1.78102 1.48673 1.34538 1.21469 0.90811 1.45320 1.02432 0.88759 1.26996 1.06220 0.91727 0.93645 1.70197 1.38700 1.32295 1.04040 0.85022 0.74823 0.78677 0.80167 1.16413 1.19469 1.19468 1.22260 1.00239 0.96650 0.83252 1.22663 0.81903 0.95717 0.96314 1.22031 1.01342 0.95905 0.98652 1.22077 1.01490 0.99916 0.94664 1.22740 0.99189 0.82068 0.97658 1.87929 1.70336 1.25432 1.46823 1.22571 0.99384 0.95489 0.81969 1.87924 1.20290 1.77134 1.42898 0.91153 0.90630 0.90237 0.92018 0.92249 0.91580 0.91597 0.88626 0.90589 0.93976 0.89696 0.92018 0.91740 0.86972 0.87191 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.57 71.98 0.69 -2.72 16 2 C 0.08 2.69 3.02 30.69 0.09 2.79 16 3 H 0.05 1.67 6.19 -2.39 -0.01 1.66 16 4 C 0.09 3.75 5.94 86.35 0.51 4.26 16 5 N -0.64 -30.00 2.59 -821.69 -2.13 -32.12 16 6 C 0.54 31.64 7.63 86.36 0.66 32.30 16 7 O -0.63 -42.65 14.51 -4.31 -0.06 -42.71 16 8 C -0.56 -31.23 8.86 24.83 0.22 -31.01 16 9 H 0.09 4.61 5.76 -2.91 -0.02 4.59 16 10 C 0.03 1.60 5.50 85.30 0.47 2.07 16 11 N -0.82 -50.11 11.84 21.84 0.26 -49.86 16 12 Si 0.99 39.93 29.56 68.60 2.03 41.95 16 13 H -0.24 -8.75 7.11 99.48 0.71 -8.05 16 14 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 15 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 16 C 0.10 3.67 5.21 86.47 0.45 4.12 16 17 C 0.07 2.35 0.71 -10.55 -0.01 2.34 16 18 C -0.14 -4.48 4.35 30.69 0.13 -4.35 16 19 C -0.14 -3.58 5.98 30.69 0.18 -3.39 16 20 C 0.06 1.25 6.84 72.01 0.49 1.75 16 21 O -0.39 -10.02 10.71 -142.31 -1.52 -11.54 16 22 C 0.08 2.07 5.80 71.98 0.42 2.49 16 23 O -0.36 -12.11 9.31 -142.31 -1.33 -13.43 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 2.89 7.06 -2.39 -0.02 2.87 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.27 15.10 8.29 -92.70 -0.77 14.33 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.10 3.56 5.50 -2.38 -0.01 3.54 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.04 1.63 6.04 -2.39 -0.01 1.62 16 34 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.06 1.67 7.85 -2.38 -0.02 1.65 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -75.78 305.48 2.60 -73.18 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.04 Total: 23.88 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 4.31 Total: 10.65 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.87 Total: -81.98 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -2.91 Total: -67.69 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.95 kcal Total: -75.78 2.60 -73.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373741392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.993 kcal (2) G-P(sol) polarization free energy of solvation -75.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds