Wall clock time and date at job start Mon Mar 30 2020 01:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00305 * 2 1 4 4 O 1.20828 * 119.99640 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00045 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.91076 * 56.10897 * 5 3 2 7 7 C 1.55201 * 109.91822 * 294.99834 * 5 3 2 8 8 C 1.52992 * 102.98299 * 242.83043 * 7 5 3 9 9 H 1.09002 * 110.84600 * 90.15021 * 8 7 5 10 10 C 1.55621 * 100.48206 * 332.67602 * 8 7 5 11 11 H 1.08998 * 109.21156 * 289.18177 * 10 8 7 12 12 C 1.51161 * 107.31671 * 170.78200 * 10 8 7 13 13 C 1.53860 * 107.33478 * 66.08296 * 12 10 8 14 14 C 1.52720 * 111.54487 * 302.87226 * 13 12 10 15 15 H 1.08991 * 109.16630 * 288.07278 * 14 13 12 16 16 C 1.52996 * 109.16488 * 168.81785 * 14 13 12 17 17 N 1.45631 * 116.84130 * 218.98989 * 8 7 5 18 18 C 1.36937 * 122.22438 * 351.14752 * 17 8 7 19 19 H 1.07999 * 119.99742 * 136.44698 * 18 17 8 20 20 C 1.38811 * 120.00216 * 316.44169 * 18 17 8 21 21 N 1.31625 * 119.99958 * 342.17603 * 20 18 17 22 22 Si 1.86795 * 120.00254 * 162.17714 * 20 18 17 23 23 H 1.48501 * 109.47141 * 60.00068 * 22 20 18 24 24 H 1.48502 * 109.47209 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47035 * 299.99971 * 22 20 18 26 26 O 1.41946 * 102.61721 * 45.07919 * 10 8 7 27 27 H 1.08998 * 109.47454 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47311 * 300.00019 * 1 2 3 29 29 H 1.09004 * 109.46989 * 59.99486 * 1 2 3 30 30 H 1.08993 * 110.71500 * 1.20709 * 7 5 3 31 31 H 1.09003 * 110.70917 * 124.28834 * 7 5 3 32 32 H 1.08998 * 109.88153 * 185.53980 * 12 10 8 33 33 H 1.09001 * 109.88615 * 306.55445 * 12 10 8 34 34 H 1.08994 * 109.06553 * 63.40741 * 13 12 10 35 35 H 1.08998 * 109.06429 * 182.34304 * 13 12 10 36 36 H 1.09008 * 109.47045 * 59.10385 * 16 14 13 37 37 H 1.08996 * 109.47163 * 179.10400 * 16 14 13 38 38 H 1.08997 * 109.47316 * 299.10833 * 16 14 13 39 39 H 0.96990 * 120.00213 * 175.57475 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9672 0.7234 -0.8498 7 6 4.1261 0.6869 1.3234 8 6 4.8210 1.8885 1.9666 9 1 4.1317 2.4379 2.6078 10 6 5.1862 2.7158 0.7001 11 1 5.9817 2.2065 0.1561 12 6 5.6852 4.0627 1.1708 13 6 7.0042 3.8245 1.9264 14 6 6.8175 2.8496 3.0870 15 1 6.2580 3.3425 3.8819 16 6 8.1902 2.4359 3.6212 17 7 6.0830 1.6319 2.6465 18 6 6.5469 0.3631 2.8705 19 1 7.5871 0.1300 2.6969 20 6 5.6804 -0.6234 3.3209 21 7 4.5281 -0.2899 3.8627 22 14 6.1494 -2.4241 3.1580 23 1 7.4045 -2.6787 3.9098 24 1 5.0612 -3.2709 3.7092 25 1 6.3552 -2.7543 1.7248 26 8 3.9891 2.6627 -0.0608 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.3167 0.3249 1.9573 31 1 4.8402 -0.1108 1.1189 32 1 5.8610 4.7131 0.3140 33 1 4.9521 4.5176 1.8370 34 1 7.7421 3.4179 1.2349 35 1 7.3685 4.7754 2.3152 36 1 8.7328 3.3212 3.9531 37 1 8.0626 1.7522 4.4603 38 1 8.7533 1.9399 2.8307 39 1 3.8951 -0.9787 4.1187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374500634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:05 Heat of formation + Delta-G solvation = -101.169936 kcal Electronic energy + Delta-G solvation = -22418.539509 eV Core-core repulsion = 19134.304199 eV Total energy + Delta-G solvation = -3284.235310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43325 -39.20968 -36.51941 -35.84892 -33.53933 -31.06581 -30.92442 -29.72054 -27.54685 -26.08749 -24.79372 -23.49479 -21.03620 -20.58529 -20.19181 -19.43609 -17.30170 -16.66269 -16.55759 -16.09066 -15.35126 -14.98941 -14.56690 -14.29416 -13.98209 -13.59091 -13.37664 -12.93566 -12.72785 -12.44180 -12.24241 -11.93256 -11.61945 -11.37308 -11.26270 -10.93129 -10.81334 -10.69492 -10.59426 -10.55135 -10.36138 -10.26089 -10.01693 -9.91213 -9.71207 -9.37992 -9.01417 -8.43611 -6.59496 -5.86911 -3.49798 2.53839 2.78867 3.30421 3.37750 3.38894 4.30088 4.41814 5.06431 5.13005 5.21521 5.23419 5.30349 5.39430 5.49194 5.52922 5.62304 5.77912 5.81600 5.84545 6.01363 6.21686 6.28018 6.36967 6.43840 6.45007 6.50427 6.57316 6.61831 6.74075 6.77200 7.06077 7.10007 7.16218 7.22120 7.45559 7.76136 8.09755 8.40696 9.07126 9.63664 10.41637 11.13722 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.009400 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.472855 B = 2978.042109 C = 4484.105183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.498 6.498 5 C 0.079 3.921 6 H 0.102 0.898 7 C -0.110 4.110 8 C 0.184 3.816 9 H 0.044 0.956 10 C 0.031 3.969 11 H 0.063 0.937 12 C -0.094 4.094 13 C -0.123 4.123 14 C 0.160 3.840 15 H 0.029 0.971 16 C -0.133 4.133 17 N -0.570 5.570 18 C -0.259 4.259 19 H 0.063 0.937 20 C 0.023 3.977 21 N -0.881 5.881 22 Si 0.890 3.110 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.279 1.279 26 O -0.350 6.350 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 2.030 -5.796 6.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.385 6.385 5 C 0.019 3.981 6 H 0.119 0.881 7 C -0.148 4.148 8 C 0.076 3.924 9 H 0.061 0.939 10 C -0.029 4.029 11 H 0.081 0.919 12 C -0.132 4.132 13 C -0.162 4.162 14 C 0.055 3.945 15 H 0.046 0.954 16 C -0.191 4.191 17 N -0.295 5.295 18 C -0.389 4.389 19 H 0.080 0.920 20 C -0.179 4.179 21 N -0.521 5.521 22 Si 0.718 3.282 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.205 1.205 26 O -0.269 6.269 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.622 2.374 -5.744 6.424 hybrid contribution -0.174 -1.089 -0.006 1.103 sum -1.796 1.285 -5.750 6.159 Atomic orbital electron populations 1.23213 0.76777 1.03388 1.02321 1.86515 1.22999 1.33325 1.84363 1.23776 0.91899 0.81306 0.72102 1.90625 1.66893 1.36363 1.44585 1.22883 0.86563 0.85810 1.02804 0.88096 1.22651 1.01679 0.99548 0.90937 1.21179 0.88858 0.92453 0.89899 0.93875 1.23365 0.86665 0.98709 0.94123 0.91887 1.21157 0.97477 0.95302 0.99234 1.22006 0.96130 0.99307 0.98768 1.20796 0.92898 0.88021 0.92803 0.95363 1.21746 0.96100 0.99726 1.01481 1.44001 1.19974 1.00861 1.64663 1.18786 0.95637 0.84926 1.39509 0.91984 1.25371 0.97841 0.98737 0.95968 1.70106 1.09302 1.32648 1.40028 0.86604 0.77883 0.85442 0.78281 1.20559 1.21483 1.20541 1.88702 1.41832 1.23839 1.72485 0.88246 0.91933 0.92222 0.89106 0.88405 0.92542 0.91778 0.92238 0.92185 0.94355 0.91866 0.92978 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.54 16 2 O -0.36 -6.06 10.56 -39.26 -0.41 -6.47 16 3 C 0.47 9.07 7.09 36.01 0.26 9.33 16 4 O -0.50 -10.77 16.28 -25.33 -0.41 -11.18 16 5 C 0.08 1.53 3.95 -26.72 -0.11 1.43 16 6 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 7 C -0.11 -2.41 4.43 -25.57 -0.11 -2.52 16 8 C 0.18 4.19 2.65 -67.01 -0.18 4.01 16 9 H 0.04 1.10 8.11 -51.93 -0.42 0.68 16 10 C 0.03 0.62 2.79 -26.26 -0.07 0.55 16 11 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 12 C -0.09 -1.66 5.98 -27.21 -0.16 -1.83 16 13 C -0.12 -2.07 5.25 -26.43 -0.14 -2.21 16 14 C 0.16 3.21 3.49 -66.76 -0.23 2.97 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C -0.13 -2.42 8.09 37.16 0.30 -2.12 16 17 N -0.57 -13.31 2.83 -155.57 -0.44 -13.75 16 18 C -0.26 -6.48 7.60 -15.06 -0.11 -6.59 16 19 H 0.06 1.55 7.02 -52.49 -0.37 1.18 16 20 C 0.02 0.58 3.56 -17.43 -0.06 0.52 16 21 N -0.88 -23.71 11.02 55.49 0.61 -23.10 16 22 Si 0.89 20.13 29.59 -169.99 -5.03 15.10 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 O -0.35 -7.31 10.75 -54.66 -0.59 -7.90 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 30 H 0.09 2.14 6.72 -51.93 -0.35 1.79 16 31 H 0.10 2.23 6.40 -51.93 -0.33 1.90 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 34 H 0.06 0.98 8.07 -51.93 -0.42 0.57 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.06 1.27 7.72 -51.93 -0.40 0.87 16 38 H 0.05 0.94 7.62 -51.93 -0.40 0.55 16 39 H 0.26 6.74 8.32 -40.82 -0.34 6.41 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -29.09 309.07 -7.22 -36.31 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.04 Total: 1.26 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 0.44 Total: 5.08 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.17 Total: -36.85 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.41 Total: -25.55 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.09 -7.22 -36.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374500634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.864 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds