Wall clock time and date at job start Mon Mar 30 2020 01:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00305 * 2 1 4 4 O 1.20828 * 119.99640 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00045 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.91076 * 56.10897 * 5 3 2 7 7 C 1.55201 * 109.91822 * 294.99834 * 5 3 2 8 8 C 1.52992 * 102.98299 * 242.83043 * 7 5 3 9 9 H 1.09002 * 110.84600 * 90.15021 * 8 7 5 10 10 C 1.55621 * 100.48206 * 332.67602 * 8 7 5 11 11 H 1.08998 * 109.21156 * 289.18177 * 10 8 7 12 12 C 1.51161 * 107.31671 * 170.78200 * 10 8 7 13 13 C 1.53860 * 107.33478 * 66.08296 * 12 10 8 14 14 C 1.52720 * 111.54487 * 302.87226 * 13 12 10 15 15 H 1.08991 * 109.16630 * 288.07278 * 14 13 12 16 16 C 1.52996 * 109.16488 * 168.81785 * 14 13 12 17 17 N 1.45631 * 116.84130 * 218.98989 * 8 7 5 18 18 C 1.36937 * 122.22438 * 351.14752 * 17 8 7 19 19 H 1.07999 * 119.99742 * 136.44698 * 18 17 8 20 20 C 1.38811 * 120.00216 * 316.44169 * 18 17 8 21 21 N 1.31625 * 119.99958 * 342.17603 * 20 18 17 22 22 Si 1.86795 * 120.00254 * 162.17714 * 20 18 17 23 23 H 1.48501 * 109.47141 * 60.00068 * 22 20 18 24 24 H 1.48502 * 109.47209 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47035 * 299.99971 * 22 20 18 26 26 O 1.41946 * 102.61721 * 45.07919 * 10 8 7 27 27 H 1.08998 * 109.47454 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47311 * 300.00019 * 1 2 3 29 29 H 1.09004 * 109.46989 * 59.99486 * 1 2 3 30 30 H 1.08993 * 110.71500 * 1.20709 * 7 5 3 31 31 H 1.09003 * 110.70917 * 124.28834 * 7 5 3 32 32 H 1.08998 * 109.88153 * 185.53980 * 12 10 8 33 33 H 1.09001 * 109.88615 * 306.55445 * 12 10 8 34 34 H 1.08994 * 109.06553 * 63.40741 * 13 12 10 35 35 H 1.08998 * 109.06429 * 182.34304 * 13 12 10 36 36 H 1.09008 * 109.47045 * 59.10385 * 16 14 13 37 37 H 1.08996 * 109.47163 * 179.10400 * 16 14 13 38 38 H 1.08997 * 109.47316 * 299.10833 * 16 14 13 39 39 H 0.96990 * 120.00213 * 175.57475 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9672 0.7234 -0.8498 7 6 4.1261 0.6869 1.3234 8 6 4.8210 1.8885 1.9666 9 1 4.1317 2.4379 2.6078 10 6 5.1862 2.7158 0.7001 11 1 5.9817 2.2065 0.1561 12 6 5.6852 4.0627 1.1708 13 6 7.0042 3.8245 1.9264 14 6 6.8175 2.8496 3.0870 15 1 6.2580 3.3425 3.8819 16 6 8.1902 2.4359 3.6212 17 7 6.0830 1.6319 2.6465 18 6 6.5469 0.3631 2.8705 19 1 7.5871 0.1300 2.6969 20 6 5.6804 -0.6234 3.3209 21 7 4.5281 -0.2899 3.8627 22 14 6.1494 -2.4241 3.1580 23 1 7.4045 -2.6787 3.9098 24 1 5.0612 -3.2709 3.7092 25 1 6.3552 -2.7543 1.7248 26 8 3.9891 2.6627 -0.0608 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.3167 0.3249 1.9573 31 1 4.8402 -0.1108 1.1189 32 1 5.8610 4.7131 0.3140 33 1 4.9521 4.5176 1.8370 34 1 7.7421 3.4179 1.2349 35 1 7.3685 4.7754 2.3152 36 1 8.7328 3.3212 3.9531 37 1 8.0626 1.7522 4.4603 38 1 8.7533 1.9399 2.8307 39 1 3.8951 -0.9787 4.1187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374500634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:04 Heat of formation + Delta-G solvation = -118.150595 kcal Electronic energy + Delta-G solvation = -22419.275846 eV Core-core repulsion = 19134.304199 eV Total energy + Delta-G solvation = -3284.971647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.98458 -40.77058 -38.07877 -37.38104 -35.27919 -32.75760 -32.59636 -31.35980 -28.88005 -27.59199 -26.55293 -25.04326 -22.66125 -22.17807 -21.79565 -21.05664 -18.87967 -18.32018 -18.10639 -17.56820 -17.01183 -16.63579 -16.24855 -15.92284 -15.59548 -15.08930 -14.93026 -14.42521 -14.25884 -13.97745 -13.85148 -13.26791 -13.23470 -12.95378 -12.83464 -12.57162 -12.40623 -12.39466 -12.29853 -12.05152 -11.91254 -11.86919 -11.63147 -11.50485 -11.38233 -10.99087 -10.65509 -10.35628 -8.49884 -7.79216 -5.46145 1.00029 1.40711 1.49900 1.52884 1.57932 2.51190 2.79848 3.28409 3.46946 3.65615 3.79440 3.97795 4.03567 4.21680 4.25691 4.26779 4.29330 4.31575 4.42928 4.58371 4.63667 4.75994 4.77582 4.90553 5.00538 5.03475 5.08082 5.19220 5.23979 5.29104 5.31655 5.42509 5.56876 5.63126 5.77493 5.81823 6.49214 6.61569 7.16598 7.76260 8.52210 9.18184 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.009400 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.472855 B = 2978.042109 C = 4484.105183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.526 6.526 5 C 0.080 3.920 6 H 0.134 0.866 7 C -0.099 4.099 8 C 0.177 3.823 9 H 0.004 0.996 10 C 0.043 3.957 11 H 0.067 0.933 12 C -0.094 4.094 13 C -0.111 4.111 14 C 0.148 3.852 15 H 0.009 0.991 16 C -0.123 4.123 17 N -0.584 5.584 18 C -0.258 4.258 19 H 0.064 0.936 20 C -0.018 4.018 21 N -0.914 5.914 22 Si 0.943 3.057 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.270 1.270 26 O -0.361 6.361 27 H 0.137 0.863 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 2.230 -7.253 7.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.415 6.415 5 C 0.021 3.979 6 H 0.151 0.849 7 C -0.137 4.137 8 C 0.069 3.931 9 H 0.022 0.978 10 C -0.017 4.017 11 H 0.085 0.915 12 C -0.131 4.131 13 C -0.150 4.150 14 C 0.043 3.957 15 H 0.026 0.974 16 C -0.180 4.180 17 N -0.310 5.310 18 C -0.388 4.388 19 H 0.082 0.918 20 C -0.217 4.217 21 N -0.556 5.556 22 Si 0.770 3.230 23 H -0.203 1.203 24 H -0.224 1.224 25 H -0.195 1.195 26 O -0.280 6.280 27 H 0.155 0.845 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.480 2.570 -7.214 7.673 hybrid contribution -0.570 -1.151 0.500 1.379 sum -1.050 1.419 -6.713 6.942 Atomic orbital electron populations 1.23616 0.74281 1.05990 1.02622 1.86496 1.25433 1.31898 1.83654 1.23741 0.91903 0.81590 0.71456 1.90606 1.67457 1.37340 1.46077 1.22978 0.87014 0.85425 1.02500 0.84905 1.22395 1.00505 0.99026 0.91807 1.21080 0.88273 0.93085 0.90621 0.97842 1.23306 0.86424 0.99734 0.92202 0.91496 1.21228 0.97552 0.94287 1.00082 1.21897 0.95847 0.99830 0.97415 1.21062 0.93132 0.87509 0.93948 0.97350 1.21650 0.95350 1.00675 1.00372 1.44272 1.20116 1.01495 1.65079 1.19004 0.95646 0.85854 1.38287 0.91812 1.25933 0.97844 1.01765 0.96111 1.70238 1.10327 1.33201 1.41811 0.85753 0.77128 0.81557 0.78524 1.20329 1.22416 1.19500 1.88693 1.42219 1.24613 1.72445 0.84533 0.92578 0.91043 0.91596 0.89386 0.89771 0.92809 0.91198 0.88853 0.90825 0.94579 0.92796 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -11.95 10.56 -51.43 -0.54 -12.49 16 3 C 0.47 18.15 7.09 71.24 0.51 18.65 16 4 O -0.53 -22.77 16.28 28.25 0.46 -22.31 16 5 C 0.08 3.06 3.95 30.60 0.12 3.18 16 6 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 7 C -0.10 -4.41 4.43 31.35 0.14 -4.28 16 8 C 0.18 8.23 2.65 46.06 0.12 8.35 16 9 H 0.00 0.21 8.11 -2.39 -0.02 0.19 16 10 C 0.04 1.67 2.79 30.90 0.09 1.75 16 11 H 0.07 2.59 8.08 -2.39 -0.02 2.57 16 12 C -0.09 -3.13 5.98 30.28 0.18 -2.95 16 13 C -0.11 -3.43 5.25 30.79 0.16 -3.27 16 14 C 0.15 5.81 3.49 44.44 0.15 5.96 16 15 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 16 C -0.12 -4.29 8.09 71.98 0.58 -3.70 16 17 N -0.58 -27.43 2.83 -646.11 -1.83 -29.26 16 18 C -0.26 -12.93 7.60 84.03 0.64 -12.29 16 19 H 0.06 3.14 7.02 -2.91 -0.02 3.12 16 20 C -0.02 -0.91 3.56 84.86 0.30 -0.61 16 21 N -0.91 -50.72 11.02 21.65 0.24 -50.49 16 22 Si 0.94 41.52 29.59 68.60 2.03 43.55 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 O -0.36 -14.77 10.75 -130.39 -1.40 -16.17 16 27 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 29 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 30 H 0.07 3.23 6.72 -2.39 -0.02 3.21 16 31 H 0.09 4.05 6.40 -2.39 -0.02 4.03 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 1.90 8.09 -2.39 -0.02 1.88 16 34 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.04 1.42 7.72 -2.39 -0.02 1.40 16 38 H 0.05 1.84 7.62 -2.39 -0.02 1.82 16 39 H 0.25 13.64 8.32 -92.72 -0.77 12.87 16 Total: -1.00 -63.79 309.07 4.17 -59.62 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.03 Total: 14.88 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 4.19 Total: 12.68 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.59 Total: -79.74 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -1.49 Total: -50.98 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -63.79 4.17 -59.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374500634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.529 kcal (2) G-P(sol) polarization free energy of solvation -63.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds