Wall clock time and date at job start Mon Mar 30 2020 01:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99993 * 2 1 4 4 O 1.20830 * 119.99866 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99964 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.81474 * 55.79208 * 5 3 2 7 7 C 1.53907 * 109.78627 * 294.99932 * 5 3 2 8 8 C 1.54400 * 104.59212 * 239.08888 * 7 5 3 9 9 H 1.09002 * 109.72808 * 100.62130 * 8 7 5 10 10 C 1.53557 * 103.55309 * 343.54829 * 8 7 5 11 11 H 1.09001 * 111.00286 * 148.72290 * 10 8 7 12 12 C 1.52834 * 109.83888 * 271.00512 * 10 8 7 13 13 C 1.52843 * 108.66531 * 296.43814 * 12 10 8 14 14 C 1.52050 * 110.09176 * 64.27058 * 13 12 10 15 15 H 1.08999 * 108.65339 * 207.04922 * 14 13 12 16 16 C 1.53001 * 108.64951 * 89.20079 * 14 13 12 17 17 N 1.43789 * 110.53056 * 221.54248 * 8 7 5 18 18 C 1.36933 * 115.68683 * 296.58985 * 17 8 7 19 19 H 1.07999 * 119.99921 * 38.76838 * 18 17 8 20 20 C 1.38811 * 120.00042 * 218.76319 * 18 17 8 21 21 N 1.31618 * 119.99907 * 23.37881 * 20 18 17 22 22 Si 1.86794 * 120.00010 * 203.37552 * 20 18 17 23 23 H 1.48502 * 109.47089 * 90.00303 * 22 20 18 24 24 H 1.48509 * 109.47235 * 210.00284 * 22 20 18 25 25 H 1.48496 * 109.47355 * 330.00004 * 22 20 18 26 26 O 1.43183 * 109.78819 * 176.59287 * 5 3 2 27 27 H 1.08993 * 109.47380 * 300.00790 * 1 2 3 28 28 H 1.09002 * 109.46646 * 60.00289 * 1 2 3 29 29 H 1.08994 * 109.47352 * 180.02562 * 1 2 3 30 30 H 1.08999 * 110.43432 * 357.90067 * 7 5 3 31 31 H 1.08996 * 110.43168 * 120.27782 * 7 5 3 32 32 H 1.09004 * 109.60161 * 56.19015 * 12 10 8 33 33 H 1.08996 * 109.60268 * 176.67990 * 12 10 8 34 34 H 1.09001 * 109.36889 * 184.46332 * 13 12 10 35 35 H 1.09006 * 109.36443 * 304.21072 * 13 12 10 36 36 H 1.09008 * 109.47159 * 61.80516 * 16 14 13 37 37 H 1.08997 * 109.47335 * 181.80277 * 16 14 13 38 38 H 1.08997 * 109.47318 * 301.80634 * 16 14 13 39 39 H 0.97001 * 120.00169 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9658 0.7183 -0.8472 7 6 4.1181 0.6912 1.3134 8 6 4.9122 1.8515 1.9515 9 1 4.3148 2.3196 2.7339 10 6 5.1070 2.8361 0.7894 11 1 5.1370 3.8645 1.1495 12 6 6.3930 2.5000 0.0350 13 6 7.5790 2.6933 0.9795 14 6 7.4964 1.7035 2.1308 15 1 8.0067 2.1300 2.9945 16 6 8.2214 0.4189 1.7246 17 7 6.1461 1.3702 2.5113 18 6 6.0219 0.4771 3.5419 19 1 5.2480 -0.2756 3.5137 20 6 6.8908 0.5393 4.6226 21 7 7.5075 1.6666 4.9072 22 14 7.1845 -0.9771 5.6732 23 1 8.3249 -1.7500 5.1188 24 1 7.4973 -0.5624 7.0645 25 1 5.9650 -1.8243 5.6717 26 8 3.9800 2.6433 -0.0796 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.3011 0.3847 1.9667 31 1 4.7766 -0.1526 1.1076 32 1 6.3590 1.4640 -0.3023 33 1 6.4972 3.1634 -0.8236 34 1 8.5075 2.5335 0.4313 35 1 7.5634 3.7085 1.3762 36 1 9.2721 0.6390 1.5350 37 1 8.1429 -0.3126 2.5289 38 1 7.7659 0.0150 0.8204 39 1 8.1150 1.7100 5.6622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374500636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:07 Heat of formation + Delta-G solvation = -105.820707 kcal Electronic energy + Delta-G solvation = -22244.855825 eV Core-core repulsion = 18960.418842 eV Total energy + Delta-G solvation = -3284.436983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67825 -39.44066 -36.81135 -36.07123 -33.23521 -32.00414 -30.46779 -29.94566 -27.62754 -26.29077 -24.63652 -23.56552 -21.99981 -21.19865 -20.57759 -18.26897 -17.59674 -16.76523 -16.42181 -16.29416 -15.37592 -15.31495 -15.03628 -14.36536 -14.07665 -13.54879 -13.13896 -13.03855 -12.73277 -12.60041 -12.40110 -12.14639 -11.82462 -11.54308 -11.31207 -11.10449 -10.98588 -10.83147 -10.75470 -10.70286 -10.41943 -10.22613 -10.11677 -9.74168 -9.60438 -9.35854 -9.13138 -8.54173 -6.60751 -5.73768 -3.48913 2.34465 2.60810 3.31813 3.40590 3.41357 4.23917 4.43903 4.83109 5.05877 5.08401 5.11026 5.15984 5.29599 5.33943 5.38999 5.47113 5.48401 5.75669 5.76860 5.92431 6.07579 6.22263 6.26507 6.40607 6.42801 6.46422 6.56413 6.63975 6.72207 6.83033 6.93859 7.00614 7.19618 7.44154 7.74408 7.89116 7.91146 8.52182 9.22702 9.86313 10.20808 11.12341 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.006778 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.719616 B = 4129.936017 C = 5048.758226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.459 3.541 4 O -0.495 6.495 5 C 0.094 3.906 6 H 0.101 0.899 7 C -0.155 4.155 8 C 0.174 3.826 9 H 0.051 0.949 10 C 0.074 3.926 11 H 0.102 0.898 12 C -0.128 4.128 13 C -0.121 4.121 14 C 0.168 3.832 15 H 0.093 0.907 16 C -0.149 4.149 17 N -0.566 5.566 18 C -0.278 4.278 19 H 0.062 0.938 20 C 0.022 3.978 21 N -0.878 5.878 22 Si 0.891 3.109 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.277 1.277 26 O -0.351 6.351 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 -2.266 -9.262 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.301 3.699 4 O -0.381 6.381 5 C 0.034 3.966 6 H 0.119 0.881 7 C -0.195 4.195 8 C 0.065 3.935 9 H 0.068 0.932 10 C 0.016 3.984 11 H 0.119 0.881 12 C -0.166 4.166 13 C -0.159 4.159 14 C 0.063 3.937 15 H 0.110 0.890 16 C -0.208 4.208 17 N -0.287 5.287 18 C -0.408 4.408 19 H 0.079 0.921 20 C -0.179 4.179 21 N -0.519 5.519 22 Si 0.720 3.280 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.202 1.202 26 O -0.270 6.270 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.604 -1.678 -9.297 10.984 hybrid contribution 0.021 -0.953 0.694 1.180 sum -5.583 -2.631 -8.603 10.588 Atomic orbital electron populations 1.23235 0.76605 1.03493 1.02445 1.86509 1.23152 1.33376 1.84402 1.24009 0.92130 0.81375 0.72356 1.90645 1.66863 1.36351 1.44240 1.22041 0.86261 0.86494 1.01795 0.88150 1.23503 1.01024 1.02012 0.93001 1.20764 0.89404 0.90148 0.93166 0.93175 1.23070 0.84983 1.00605 0.89704 0.88064 1.21773 0.95049 1.01729 0.98036 1.21595 0.96889 1.00313 0.97100 1.19924 0.85533 0.92457 0.95806 0.88984 1.22207 0.97149 1.01169 1.00314 1.42480 0.98095 1.51065 1.37076 1.19008 1.17202 1.07528 0.97017 0.92058 1.25159 1.00774 0.95996 0.96008 1.69971 1.30688 1.23417 1.27816 0.86485 0.78507 0.83473 0.79523 1.21130 1.21755 1.20170 1.88581 1.48765 1.24363 1.65264 0.91908 0.92104 0.88147 0.90798 0.88687 0.91649 0.92341 0.92030 0.92658 0.95228 0.91978 0.95063 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.17 10.56 -39.26 -0.41 -5.58 16 3 C 0.46 7.75 7.05 36.00 0.25 8.00 16 4 O -0.50 -9.64 16.27 -25.42 -0.41 -10.06 16 5 C 0.09 1.56 3.75 -27.41 -0.10 1.45 16 6 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 7 C -0.15 -2.79 5.34 -25.52 -0.14 -2.93 16 8 C 0.17 3.58 3.25 -68.35 -0.22 3.36 16 9 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 10 C 0.07 1.35 3.66 -26.53 -0.10 1.25 16 11 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 12 C -0.13 -2.14 5.37 -26.90 -0.14 -2.29 16 13 C -0.12 -2.16 5.48 -27.30 -0.15 -2.31 16 14 C 0.17 3.65 2.65 -69.64 -0.18 3.47 16 15 H 0.09 2.34 5.57 -51.93 -0.29 2.05 16 16 C -0.15 -3.05 8.84 37.16 0.33 -2.72 16 17 N -0.57 -12.94 2.63 -161.13 -0.42 -13.36 16 18 C -0.28 -7.02 7.55 -15.06 -0.11 -7.13 16 19 H 0.06 1.56 7.44 -52.49 -0.39 1.17 16 20 C 0.02 0.58 4.13 -17.43 -0.07 0.51 16 21 N -0.88 -23.92 11.30 55.49 0.63 -23.29 16 22 Si 0.89 20.60 29.61 -169.99 -5.03 15.56 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 O -0.35 -6.48 10.28 -54.96 -0.57 -7.05 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.33 7.68 -51.93 -0.40 0.93 16 31 H 0.09 1.72 7.96 -51.93 -0.41 1.31 16 32 H 0.06 1.11 7.58 -51.93 -0.39 0.71 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.99 7.78 -51.93 -0.40 0.58 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.54 8.11 -51.92 -0.42 0.12 16 37 H 0.06 1.41 6.52 -51.93 -0.34 1.07 16 38 H 0.03 0.59 7.81 -51.93 -0.41 0.18 16 39 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -28.91 309.47 -7.10 -36.01 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.97 Total: 0.99 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 0.43 Total: 2.12 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.20 Total: -36.65 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.39 Total: -22.69 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.91 -7.10 -36.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374500636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.810 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds