Wall clock time and date at job start Mon Mar 30 2020 01:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34220 * 117.00025 * 2 1 4 4 O 1.20825 * 120.00195 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00068 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.06911 * 55.23892 * 5 3 2 7 7 C 1.55201 * 109.91520 * 294.02732 * 5 3 2 8 8 C 1.52984 * 102.97772 * 242.83563 * 7 5 3 9 9 H 1.09000 * 111.31360 * 90.32970 * 8 7 5 10 10 C 1.55618 * 100.48920 * 332.66603 * 8 7 5 11 11 H 1.08995 * 109.22703 * 289.17421 * 10 8 7 12 12 C 1.51170 * 106.82225 * 171.03257 * 10 8 7 13 13 C 1.53904 * 107.31093 * 66.86173 * 12 10 8 14 14 C 1.52713 * 111.11857 * 302.04953 * 13 12 10 15 15 H 1.09001 * 109.16601 * 169.11672 * 14 13 12 16 16 C 1.53002 * 109.16478 * 288.31720 * 14 13 12 17 17 N 1.45632 * 116.84736 * 218.96281 * 8 7 5 18 18 C 1.36937 * 122.23016 * 351.17873 * 17 8 7 19 19 H 1.07997 * 119.99920 * 25.13485 * 18 17 8 20 20 C 1.38810 * 119.99659 * 205.13811 * 18 17 8 21 21 N 1.31619 * 120.00458 * 17.33010 * 20 18 17 22 22 Si 1.86799 * 119.99964 * 197.32877 * 20 18 17 23 23 H 1.48506 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47344 * 119.99808 * 22 20 18 25 25 H 1.48495 * 109.47302 * 240.00147 * 22 20 18 26 26 O 1.41957 * 102.60901 * 45.07996 * 10 8 7 27 27 H 1.09001 * 109.47156 * 60.00129 * 1 2 3 28 28 H 1.09009 * 109.47610 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47330 * 299.99884 * 1 2 3 30 30 H 1.09001 * 110.71372 * 1.20811 * 7 5 3 31 31 H 1.09002 * 110.71385 * 124.46442 * 7 5 3 32 32 H 1.08994 * 109.88179 * 185.90316 * 12 10 8 33 33 H 1.08996 * 109.88418 * 306.99278 * 12 10 8 34 34 H 1.08996 * 109.04375 * 181.79877 * 13 12 10 35 35 H 1.09011 * 109.47142 * 62.57109 * 13 12 10 36 36 H 1.08995 * 109.47495 * 181.54016 * 16 14 13 37 37 H 1.09002 * 109.46951 * 301.53622 * 16 14 13 38 38 H 1.08994 * 109.47138 * 61.53325 * 16 14 13 39 39 H 0.96995 * 120.00231 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9700 0.7116 -0.8419 7 6 4.1259 0.7089 1.3318 8 6 4.8206 1.9210 1.9551 9 1 4.1384 2.4848 2.5914 10 6 5.1861 2.7272 0.6752 11 1 5.9819 2.2094 0.1399 12 6 5.6889 4.0762 1.1366 13 6 7.0166 3.8408 1.8784 14 6 6.8283 2.8838 3.0535 15 1 7.8058 2.5878 3.4341 16 6 6.0535 3.5974 4.1631 17 7 6.0822 1.6759 2.6400 18 6 6.5465 0.4112 2.8850 19 1 6.2332 -0.4101 2.2576 20 6 7.4197 0.1847 3.9401 21 7 7.5392 1.0784 4.8989 22 14 8.4252 -1.3884 3.9990 23 1 8.1103 -2.2220 2.8111 24 1 9.8716 -1.0518 3.9974 25 1 8.0937 -2.1418 5.2349 26 8 3.9890 2.6614 -0.0849 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.3164 0.3573 1.9715 31 1 4.8424 -0.0900 1.1407 32 1 5.8616 4.7217 0.2755 33 1 4.9599 4.5348 1.8046 34 1 7.3892 4.7945 2.2521 35 1 7.7481 3.4185 1.1891 36 1 5.9399 2.9277 5.0155 37 1 6.5993 4.4889 4.4719 38 1 5.0693 3.8841 3.7926 39 1 8.1496 0.9203 5.6359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374500638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:09 Heat of formation + Delta-G solvation = -96.917351 kcal Electronic energy + Delta-G solvation = -22172.752873 eV Core-core repulsion = 18888.701968 eV Total energy + Delta-G solvation = -3284.050904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68065 -39.44028 -36.69787 -36.04990 -33.21262 -31.84858 -30.13353 -29.75124 -27.73732 -26.54799 -24.21208 -23.87447 -21.47980 -20.93487 -20.48383 -19.00352 -17.45598 -16.84063 -16.44385 -16.33406 -15.56567 -15.12354 -14.66406 -14.38436 -14.02222 -13.63981 -13.30419 -13.04081 -12.88676 -12.26632 -12.11021 -11.99385 -11.74604 -11.65926 -11.18849 -11.02552 -10.90569 -10.84009 -10.78738 -10.61718 -10.43071 -10.08907 -10.05168 -9.81341 -9.61877 -9.32286 -9.15829 -8.49140 -6.75342 -5.85253 -3.27551 2.29519 2.55334 3.32996 3.41787 3.42662 4.11558 4.43226 4.81580 4.90290 5.06126 5.09451 5.15306 5.25669 5.41315 5.45130 5.51028 5.72555 5.76822 5.83640 5.92699 6.03625 6.20009 6.34561 6.37798 6.45888 6.50906 6.60436 6.67192 6.71809 6.78838 6.91204 7.04736 7.25105 7.58864 7.66943 7.81153 7.86542 8.33266 9.11363 9.74457 10.34613 11.22356 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.006786 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.435137 B = 4125.332959 C = 5075.900948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.492 6.492 5 C 0.089 3.911 6 H 0.107 0.893 7 C -0.133 4.133 8 C 0.143 3.857 9 H 0.047 0.953 10 C 0.040 3.960 11 H 0.067 0.933 12 C -0.094 4.094 13 C -0.130 4.130 14 C 0.183 3.817 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.571 5.571 18 C -0.252 4.252 19 H 0.073 0.927 20 C 0.006 3.994 21 N -0.896 5.896 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 O -0.347 6.347 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 0.024 -7.706 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.305 3.695 4 O -0.378 6.378 5 C 0.030 3.970 6 H 0.125 0.875 7 C -0.171 4.171 8 C 0.035 3.965 9 H 0.064 0.936 10 C -0.020 4.020 11 H 0.085 0.915 12 C -0.131 4.131 13 C -0.170 4.170 14 C 0.077 3.923 15 H 0.119 0.881 16 C -0.206 4.206 17 N -0.294 5.294 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.193 4.193 21 N -0.540 5.540 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 O -0.266 6.266 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.107 0.448 -7.660 10.458 hybrid contribution 0.299 -0.824 0.207 0.900 sum -6.808 -0.375 -7.453 10.101 Atomic orbital electron populations 1.23248 0.76459 1.03565 1.02490 1.86500 1.23248 1.33222 1.84398 1.23736 0.91816 0.81440 0.72506 1.90653 1.66789 1.36333 1.44040 1.22651 0.86597 0.86238 1.01525 0.87534 1.22667 1.01020 1.00333 0.93041 1.21598 0.89815 0.92853 0.92258 0.93554 1.23245 0.86389 0.99277 0.93049 0.91529 1.21216 0.97941 0.94714 0.99263 1.22150 0.95341 1.00057 0.99403 1.20478 0.97929 0.84179 0.89731 0.88052 1.22127 0.98022 0.99028 1.01431 1.43937 1.15832 1.02516 1.67109 1.19120 1.24581 0.85482 1.08925 0.90958 1.24983 1.01776 0.97709 0.94875 1.70007 1.38358 1.35537 1.10080 0.86244 0.80195 0.82983 0.77442 1.20278 1.21590 1.21801 1.88743 1.42034 1.23655 1.72126 0.92052 0.88067 0.91878 0.90380 0.87783 0.92770 0.91600 0.92165 0.92583 0.90595 0.95232 0.95689 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.02 10.56 -39.23 -0.41 -5.44 16 3 C 0.46 7.71 7.09 36.01 0.26 7.96 16 4 O -0.49 -9.52 16.28 -25.33 -0.41 -9.93 16 5 C 0.09 1.48 3.95 -26.71 -0.11 1.38 16 6 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 7 C -0.13 -2.39 5.94 -25.57 -0.15 -2.54 16 8 C 0.14 2.96 3.04 -67.01 -0.20 2.75 16 9 H 0.05 1.04 6.97 -51.93 -0.36 0.68 16 10 C 0.04 0.76 2.83 -26.26 -0.07 0.68 16 11 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 12 C -0.09 -1.67 5.75 -27.18 -0.16 -1.82 16 13 C -0.13 -2.40 5.36 -26.41 -0.14 -2.55 16 14 C 0.18 4.04 2.32 -67.32 -0.16 3.89 16 15 H 0.10 2.55 6.02 -51.93 -0.31 2.24 16 16 C -0.15 -3.17 8.81 37.16 0.33 -2.84 16 17 N -0.57 -13.27 2.65 -156.35 -0.41 -13.69 16 18 C -0.25 -6.36 9.28 -15.06 -0.14 -6.50 16 19 H 0.07 1.76 6.14 -52.49 -0.32 1.44 16 20 C 0.01 0.14 5.00 -17.43 -0.09 0.06 16 21 N -0.90 -24.14 9.97 55.49 0.55 -23.59 16 22 Si 0.90 20.59 29.59 -169.99 -5.03 15.56 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 O -0.35 -6.61 10.77 -54.64 -0.59 -7.20 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 28 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.08 1.37 7.72 -51.93 -0.40 0.97 16 31 H 0.10 1.87 6.19 -51.93 -0.32 1.55 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.20 7.03 -51.93 -0.36 0.83 16 34 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 35 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.08 1.86 7.11 -51.93 -0.37 1.49 16 37 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.02 0.51 5.91 -51.93 -0.31 0.20 16 39 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 305.58 15.07 4.60 4.60 Total: -1.00 -29.11 305.58 -6.96 -36.06 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.69 Total: 1.69 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 0.43 Total: 1.92 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.14 Total: -37.27 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.42 Total: -22.57 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.11 -6.96 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374500638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.853 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds