Wall clock time and date at job start Mon Mar 30 2020 01:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34220 * 117.00025 * 2 1 4 4 O 1.20825 * 120.00195 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00068 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.06911 * 55.23892 * 5 3 2 7 7 C 1.55201 * 109.91520 * 294.02732 * 5 3 2 8 8 C 1.52984 * 102.97772 * 242.83563 * 7 5 3 9 9 H 1.09000 * 111.31360 * 90.32970 * 8 7 5 10 10 C 1.55618 * 100.48920 * 332.66603 * 8 7 5 11 11 H 1.08995 * 109.22703 * 289.17421 * 10 8 7 12 12 C 1.51170 * 106.82225 * 171.03257 * 10 8 7 13 13 C 1.53904 * 107.31093 * 66.86173 * 12 10 8 14 14 C 1.52713 * 111.11857 * 302.04953 * 13 12 10 15 15 H 1.09001 * 109.16601 * 169.11672 * 14 13 12 16 16 C 1.53002 * 109.16478 * 288.31720 * 14 13 12 17 17 N 1.45632 * 116.84736 * 218.96281 * 8 7 5 18 18 C 1.36937 * 122.23016 * 351.17873 * 17 8 7 19 19 H 1.07997 * 119.99920 * 25.13485 * 18 17 8 20 20 C 1.38810 * 119.99659 * 205.13811 * 18 17 8 21 21 N 1.31619 * 120.00458 * 17.33010 * 20 18 17 22 22 Si 1.86799 * 119.99964 * 197.32877 * 20 18 17 23 23 H 1.48506 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47344 * 119.99808 * 22 20 18 25 25 H 1.48495 * 109.47302 * 240.00147 * 22 20 18 26 26 O 1.41957 * 102.60901 * 45.07996 * 10 8 7 27 27 H 1.09001 * 109.47156 * 60.00129 * 1 2 3 28 28 H 1.09009 * 109.47610 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47330 * 299.99884 * 1 2 3 30 30 H 1.09001 * 110.71372 * 1.20811 * 7 5 3 31 31 H 1.09002 * 110.71385 * 124.46442 * 7 5 3 32 32 H 1.08994 * 109.88179 * 185.90316 * 12 10 8 33 33 H 1.08996 * 109.88418 * 306.99278 * 12 10 8 34 34 H 1.08996 * 109.04375 * 181.79877 * 13 12 10 35 35 H 1.09011 * 109.47142 * 62.57109 * 13 12 10 36 36 H 1.08995 * 109.47495 * 181.54016 * 16 14 13 37 37 H 1.09002 * 109.46951 * 301.53622 * 16 14 13 38 38 H 1.08994 * 109.47138 * 61.53325 * 16 14 13 39 39 H 0.96995 * 120.00231 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9700 0.7116 -0.8419 7 6 4.1259 0.7089 1.3318 8 6 4.8206 1.9210 1.9551 9 1 4.1384 2.4848 2.5914 10 6 5.1861 2.7272 0.6752 11 1 5.9819 2.2094 0.1399 12 6 5.6889 4.0762 1.1366 13 6 7.0166 3.8408 1.8784 14 6 6.8283 2.8838 3.0535 15 1 7.8058 2.5878 3.4341 16 6 6.0535 3.5974 4.1631 17 7 6.0822 1.6759 2.6400 18 6 6.5465 0.4112 2.8850 19 1 6.2332 -0.4101 2.2576 20 6 7.4197 0.1847 3.9401 21 7 7.5392 1.0784 4.8989 22 14 8.4252 -1.3884 3.9990 23 1 8.1103 -2.2220 2.8111 24 1 9.8716 -1.0518 3.9974 25 1 8.0937 -2.1418 5.2349 26 8 3.9890 2.6614 -0.0849 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.3164 0.3573 1.9715 31 1 4.8424 -0.0900 1.1407 32 1 5.8616 4.7217 0.2755 33 1 4.9599 4.5348 1.8046 34 1 7.3892 4.7945 2.2521 35 1 7.7481 3.4185 1.1891 36 1 5.9399 2.9277 5.0155 37 1 6.5993 4.4889 4.4719 38 1 5.0693 3.8841 3.7926 39 1 8.1496 0.9203 5.6359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374500638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:09 Heat of formation + Delta-G solvation = -113.560773 kcal Electronic energy + Delta-G solvation = -22173.474586 eV Core-core repulsion = 18888.701968 eV Total energy + Delta-G solvation = -3284.772617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03746 -40.84497 -38.19352 -37.40398 -34.90618 -33.52498 -31.69655 -31.35707 -29.00581 -27.96560 -26.03590 -25.28208 -23.05960 -22.40825 -21.88851 -20.66690 -18.80111 -18.11301 -18.04707 -17.71051 -17.15441 -16.61790 -16.16578 -15.91648 -15.65334 -15.19976 -14.65180 -14.55809 -14.21193 -13.80193 -13.62219 -13.39160 -13.31102 -12.97858 -12.80658 -12.73244 -12.68571 -12.46148 -12.17491 -12.05691 -11.88533 -11.85307 -11.52693 -11.39616 -11.32236 -10.91632 -10.73482 -10.37965 -8.61219 -7.79356 -5.23137 1.00045 1.38535 1.50740 1.54793 1.62603 2.52917 2.74569 3.34621 3.44332 3.59636 3.68026 3.95202 4.00117 4.19927 4.27954 4.29841 4.31149 4.33303 4.42585 4.48591 4.68216 4.73181 4.81187 4.95394 4.97282 5.00330 5.05407 5.18521 5.20303 5.22691 5.30340 5.38442 5.70196 5.76385 5.81533 5.99975 6.43164 6.62412 7.19749 7.87551 8.45869 9.26239 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.006786 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.435137 B = 4125.332959 C = 5075.900948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.468 3.532 4 O -0.525 6.525 5 C 0.090 3.910 6 H 0.140 0.860 7 C -0.126 4.126 8 C 0.134 3.866 9 H 0.025 0.975 10 C 0.051 3.949 11 H 0.067 0.933 12 C -0.091 4.091 13 C -0.120 4.120 14 C 0.178 3.822 15 H 0.069 0.931 16 C -0.135 4.135 17 N -0.583 5.583 18 C -0.254 4.254 19 H 0.080 0.920 20 C -0.045 4.045 21 N -0.922 5.922 22 Si 0.960 3.040 23 H -0.265 1.265 24 H -0.295 1.295 25 H -0.299 1.299 26 O -0.360 6.360 27 H 0.067 0.933 28 H 0.138 0.862 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.029 0.971 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 -0.432 -9.443 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.311 3.689 4 O -0.414 6.414 5 C 0.032 3.968 6 H 0.157 0.843 7 C -0.164 4.164 8 C 0.026 3.974 9 H 0.043 0.957 10 C -0.008 4.008 11 H 0.085 0.915 12 C -0.128 4.128 13 C -0.159 4.159 14 C 0.073 3.927 15 H 0.087 0.913 16 C -0.194 4.194 17 N -0.306 5.306 18 C -0.383 4.383 19 H 0.098 0.902 20 C -0.241 4.241 21 N -0.568 5.568 22 Si 0.789 3.211 23 H -0.189 1.189 24 H -0.222 1.222 25 H -0.227 1.227 26 O -0.278 6.278 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.547 -0.026 -9.424 12.073 hybrid contribution 0.321 -0.716 0.753 1.087 sum -7.226 -0.742 -8.671 11.311 Atomic orbital electron populations 1.23630 0.74235 1.06074 1.02631 1.86487 1.25361 1.31631 1.83636 1.23710 0.91793 0.81672 0.71696 1.90642 1.67450 1.37506 1.45766 1.22813 0.86943 0.85360 1.01733 0.84261 1.22582 1.00787 0.99347 0.93682 1.21672 0.88695 0.94442 0.92607 0.95749 1.23105 0.86438 0.99527 0.91739 0.91498 1.21204 0.97160 0.94555 0.99922 1.22001 0.95954 1.00001 0.97926 1.20470 0.96204 0.84730 0.91344 0.91299 1.21965 0.98562 0.98857 0.99988 1.44106 1.16971 1.02311 1.67244 1.19461 1.23885 0.86571 1.08411 0.90242 1.25641 1.03192 1.00270 0.94984 1.70167 1.39007 1.37079 1.10563 0.85325 0.78368 0.80173 0.77237 1.18937 1.22209 1.22706 1.88730 1.41994 1.25162 1.71963 0.91463 0.84396 0.92283 0.90480 0.87578 0.90271 0.92144 0.89932 0.92304 0.94231 0.93328 0.95224 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.35 -9.21 10.56 -51.32 -0.54 -9.75 16 3 C 0.47 14.81 7.09 71.24 0.51 15.31 16 4 O -0.53 -19.77 16.28 28.26 0.46 -19.31 16 5 C 0.09 2.81 3.95 30.61 0.12 2.93 16 6 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 7 C -0.13 -4.38 5.94 31.34 0.19 -4.20 16 8 C 0.13 5.46 3.04 46.05 0.14 5.60 16 9 H 0.02 1.12 6.97 -2.39 -0.02 1.10 16 10 C 0.05 1.86 2.83 30.90 0.09 1.94 16 11 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 12 C -0.09 -3.04 5.75 30.30 0.17 -2.87 16 13 C -0.12 -4.22 5.36 30.80 0.17 -4.06 16 14 C 0.18 7.89 2.32 44.63 0.10 8.00 16 15 H 0.07 3.53 6.02 -2.39 -0.01 3.51 16 16 C -0.13 -5.85 8.81 71.98 0.63 -5.21 16 17 N -0.58 -27.07 2.65 -648.56 -1.72 -28.79 16 18 C -0.25 -12.75 9.28 84.03 0.78 -11.97 16 19 H 0.08 3.80 6.14 -2.91 -0.02 3.78 16 20 C -0.04 -2.34 5.00 84.86 0.42 -1.92 16 21 N -0.92 -50.95 9.97 21.65 0.22 -50.74 16 22 Si 0.96 42.59 29.59 68.60 2.03 44.62 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 26 O -0.36 -13.03 10.77 -130.40 -1.40 -14.44 16 27 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 28 H 0.14 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 30 H 0.08 2.65 7.72 -2.39 -0.02 2.63 16 31 H 0.11 3.64 6.19 -2.39 -0.01 3.62 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.10 7.03 -2.39 -0.02 2.08 16 34 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 35 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.04 1.98 7.11 -2.39 -0.02 1.96 16 37 H 0.05 1.86 8.13 -2.39 -0.02 1.84 16 38 H 0.03 1.21 5.91 -2.39 -0.01 1.20 16 39 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 Total: -1.00 -62.76 305.58 4.61 -58.15 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.05 Total: 14.98 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.52 Total: 5.26 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -1.50 Total: -79.53 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.49 Total: -43.50 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -62.76 4.61 -58.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374500638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.407 kcal (2) G-P(sol) polarization free energy of solvation -62.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds