Wall clock time and date at job start Mon Mar 30 2020 01:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.53006 * 109.46864 * 190.00082 * 14 12 2 16 16 C 1.50706 * 109.47026 * 179.97438 * 15 14 12 17 17 C 1.38419 * 120.02626 * 269.72340 * 16 15 14 18 18 F 1.35108 * 120.00758 * 0.02562 * 17 16 15 19 19 C 1.38468 * 119.97562 * 179.79164 * 17 16 15 20 20 C 1.38210 * 120.02244 * 0.48639 * 19 17 16 21 21 C 1.38204 * 120.05396 * 359.74210 * 20 19 17 22 22 C 1.38418 * 120.02330 * 89.99908 * 16 15 14 23 23 F 1.35093 * 120.01442 * 359.97438 * 22 16 15 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 29 29 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 30 30 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 31 31 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 32 32 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 33 33 H 1.08998 * 109.47108 * 300.00060 * 15 14 12 34 34 H 1.08999 * 109.47275 * 60.00065 * 15 14 12 35 35 H 1.08004 * 119.98808 * 180.22635 * 19 17 16 36 36 H 1.08008 * 119.96964 * 179.76917 * 20 19 17 37 37 H 1.07992 * 119.99059 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8627 -0.9041 -3.6342 16 6 1.3789 -0.2209 -4.8874 17 6 0.0951 -0.4518 -5.3507 18 9 -0.7251 -1.2895 -4.6792 19 6 -0.3497 0.1799 -6.4998 20 6 0.4909 1.0328 -7.1897 21 6 1.7745 1.2605 -6.7308 22 6 2.2199 0.6336 -5.5791 23 9 3.4748 0.8560 -5.1310 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 3.8029 -1.3532 -0.3068 29 1 3.8209 -1.3107 -2.0864 30 1 3.9187 0.2052 -1.1592 31 1 0.4722 0.1326 -2.3564 32 1 2.0519 0.9348 -2.5279 33 1 2.9391 -1.0628 -3.6989 34 1 1.3594 -1.8650 -3.5274 35 1 -1.3526 0.0027 -6.8594 36 1 0.1443 1.5221 -8.0880 37 1 2.4307 1.9268 -7.2709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402807591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:47 Heat of formation + Delta-G solvation = -62.855829 kcal Electronic energy + Delta-G solvation = -20599.649878 eV Core-core repulsion = 17205.988476 eV Total energy + Delta-G solvation = -3393.661402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.02135 -48.96481 -39.03391 -37.16044 -33.72597 -32.26263 -30.40752 -29.34355 -28.26704 -25.58417 -24.28170 -22.94815 -22.75548 -20.95826 -19.26936 -18.18609 -17.38165 -16.28155 -16.18354 -15.89869 -15.62960 -15.27647 -15.13084 -14.46406 -14.27798 -14.18767 -13.50527 -13.02537 -12.93578 -12.83908 -12.29224 -12.21162 -11.97029 -11.72717 -11.34832 -11.18878 -11.04517 -10.84020 -10.65663 -10.25461 -10.06327 -10.00839 -9.79878 -8.92843 -8.87752 -8.77228 -8.38874 -7.14956 -5.97951 -4.02393 0.83895 0.86956 3.22508 3.34484 3.38487 3.41597 3.82323 4.31136 4.38936 4.47429 4.58362 4.66660 4.97787 5.21655 5.34336 5.41252 5.60839 5.67322 5.81766 5.83906 5.88698 5.97894 6.02309 6.21534 6.36466 6.46386 6.52098 6.67579 6.81989 6.89791 7.09852 7.19338 7.55569 7.75743 7.85911 8.23853 8.35456 8.63243 9.03686 9.62294 11.08981 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031952 B = 0.004375 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.090666 B = 6398.184076 C = 6802.378414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.537 5.537 13 C 0.036 3.964 14 C 0.060 3.940 15 C -0.080 4.080 16 C -0.142 4.142 17 C 0.132 3.868 18 F -0.125 7.125 19 C -0.165 4.165 20 C -0.072 4.072 21 C -0.166 4.166 22 C 0.129 3.871 23 F -0.128 7.128 24 H 0.085 0.915 25 H 0.007 0.993 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.011 0.989 31 H 0.075 0.925 32 H 0.021 0.979 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 0.406 -19.453 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.261 5.261 13 C -0.113 4.113 14 C -0.069 4.069 15 C -0.117 4.117 16 C -0.145 4.145 17 C 0.113 3.887 18 F -0.103 7.103 19 C -0.184 4.184 20 C -0.090 4.090 21 C -0.185 4.185 22 C 0.109 3.891 23 F -0.106 7.106 24 H 0.103 0.897 25 H 0.026 0.974 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.697 0.026 -19.226 19.238 hybrid contribution 0.688 0.372 1.027 1.291 sum -0.009 0.398 -18.199 18.204 Atomic orbital electron populations 1.21854 0.97736 0.99692 0.99805 1.19244 0.92335 0.91957 0.85815 0.98505 1.21121 1.31052 1.12266 0.89745 0.91881 1.24938 0.95225 0.95085 0.99009 1.69889 1.36935 1.23038 1.23470 0.86574 0.79052 0.79768 0.82079 1.21376 1.20206 1.20363 1.62123 1.09285 1.52669 1.02040 1.22245 0.88845 0.99147 1.01028 1.22015 1.01053 0.94037 0.89748 1.20598 1.02023 0.99517 0.89586 1.20107 0.93511 1.00928 0.99918 1.17254 0.87712 0.91886 0.91884 1.91557 1.70927 1.68435 1.79368 1.21202 1.01840 0.99824 0.95528 1.20778 0.92301 0.96576 0.99362 1.21179 0.97894 1.02745 0.96634 1.17257 0.80234 0.97466 0.94113 1.91528 1.37247 1.93029 1.88842 0.89658 0.97368 0.94609 0.92963 0.90592 0.93788 0.97028 0.90624 0.96099 0.90276 0.89410 0.84147 0.84165 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.76 37.16 0.33 -3.04 16 2 C 0.21 5.55 2.06 -68.87 -0.14 5.41 16 3 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 4 C -0.50 -14.06 7.93 -34.44 -0.27 -14.33 16 5 H 0.06 1.74 6.39 -52.49 -0.34 1.41 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.91 11.32 55.43 0.63 -25.28 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.54 -12.06 4.62 -236.28 -1.09 -13.15 16 13 C 0.04 0.74 9.05 60.06 0.54 1.28 16 14 C 0.06 1.17 4.76 -3.82 -0.02 1.15 16 15 C -0.08 -1.28 4.93 -27.88 -0.14 -1.42 16 16 C -0.14 -2.00 5.15 -104.49 -0.54 -2.54 16 17 C 0.13 1.72 7.24 -39.43 -0.29 1.43 16 18 F -0.12 -1.81 16.47 2.25 0.04 -1.77 16 19 C -0.16 -1.63 10.02 -39.51 -0.40 -2.02 16 20 C -0.07 -0.60 10.04 -39.60 -0.40 -1.00 16 21 C -0.17 -1.62 10.03 -39.51 -0.40 -2.02 16 22 C 0.13 1.66 7.24 -39.43 -0.29 1.37 16 23 F -0.13 -1.81 16.48 2.25 0.04 -1.77 16 24 H 0.08 2.34 6.07 -51.93 -0.32 2.03 16 25 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.08 1.64 6.23 -51.93 -0.32 1.31 16 29 H 0.04 0.77 6.30 -51.93 -0.33 0.45 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 1.52 5.83 -51.93 -0.30 1.22 16 32 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.08 1.24 5.97 -51.93 -0.31 0.93 16 34 H 0.09 1.44 7.63 -51.93 -0.40 1.04 16 35 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -29.79 307.92 -7.59 -37.38 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.73 Total: -2.45 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.09 Total: -14.17 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.46 Total: -38.43 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.07 Total: -3.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.79 -7.59 -37.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402807591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.474 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds