Wall clock time and date at job start Mon Mar 30 2020 01:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.53006 * 109.46864 * 190.00082 * 14 12 2 16 16 C 1.50706 * 109.47026 * 179.97438 * 15 14 12 17 17 C 1.38419 * 120.02626 * 269.72340 * 16 15 14 18 18 F 1.35108 * 120.00758 * 0.02562 * 17 16 15 19 19 C 1.38468 * 119.97562 * 179.79164 * 17 16 15 20 20 C 1.38210 * 120.02244 * 0.48639 * 19 17 16 21 21 C 1.38204 * 120.05396 * 359.74210 * 20 19 17 22 22 C 1.38418 * 120.02330 * 89.99908 * 16 15 14 23 23 F 1.35093 * 120.01442 * 359.97438 * 22 16 15 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 29 29 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 30 30 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 31 31 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 32 32 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 33 33 H 1.08998 * 109.47108 * 300.00060 * 15 14 12 34 34 H 1.08999 * 109.47275 * 60.00065 * 15 14 12 35 35 H 1.08004 * 119.98808 * 180.22635 * 19 17 16 36 36 H 1.08008 * 119.96964 * 179.76917 * 20 19 17 37 37 H 1.07992 * 119.99059 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8627 -0.9041 -3.6342 16 6 1.3789 -0.2209 -4.8874 17 6 0.0951 -0.4518 -5.3507 18 9 -0.7251 -1.2895 -4.6792 19 6 -0.3497 0.1799 -6.4998 20 6 0.4909 1.0328 -7.1897 21 6 1.7745 1.2605 -6.7308 22 6 2.2199 0.6336 -5.5791 23 9 3.4748 0.8560 -5.1310 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 3.8029 -1.3532 -0.3068 29 1 3.8209 -1.3107 -2.0864 30 1 3.9187 0.2052 -1.1592 31 1 0.4722 0.1326 -2.3564 32 1 2.0519 0.9348 -2.5279 33 1 2.9391 -1.0628 -3.6989 34 1 1.3594 -1.8650 -3.5274 35 1 -1.3526 0.0027 -6.8594 36 1 0.1443 1.5221 -8.0880 37 1 2.4307 1.9268 -7.2709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402807591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:46 Heat of formation + Delta-G solvation = -79.914515 kcal Electronic energy + Delta-G solvation = -20600.389598 eV Core-core repulsion = 17205.988476 eV Total energy + Delta-G solvation = -3394.401122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.01971 -49.98231 -39.98352 -38.86671 -35.38622 -33.88002 -31.24607 -31.21870 -29.69391 -27.41421 -26.09442 -24.17757 -23.82161 -22.28715 -21.14848 -19.11423 -18.43739 -18.31211 -17.33840 -17.02639 -16.68415 -16.57151 -16.30233 -16.06258 -15.75548 -15.35173 -15.25426 -14.70783 -14.18677 -14.07164 -13.72161 -13.68747 -13.17638 -12.97379 -12.88205 -12.82254 -12.65309 -12.54886 -12.29010 -12.06309 -12.00069 -11.99467 -11.55408 -10.91751 -10.52900 -9.83601 -9.73445 -9.02429 -8.12699 -6.25181 -0.00855 -0.00115 1.42042 1.44444 1.51976 2.38495 2.42420 2.92736 3.13762 3.21776 3.44682 3.66373 3.70628 3.94516 4.09295 4.24047 4.26160 4.48114 4.51825 4.67714 4.72153 4.83015 4.90817 4.92607 4.97816 5.00505 5.04566 5.10737 5.16166 5.22126 5.23429 5.45687 5.69741 5.73464 5.82068 6.21086 6.33862 6.66748 6.88207 7.43847 8.93649 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031952 B = 0.004375 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.090666 B = 6398.184076 C = 6802.378414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.216 3.784 3 H -0.040 1.040 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.964 3.036 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.271 1.271 12 N -0.543 5.543 13 C 0.040 3.960 14 C 0.067 3.933 15 C -0.066 4.066 16 C -0.167 4.167 17 C 0.109 3.891 18 F -0.141 7.141 19 C -0.156 4.156 20 C -0.053 4.053 21 C -0.156 4.156 22 C 0.107 3.893 23 F -0.142 7.142 24 H 0.062 0.938 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.262 0.738 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.003 0.997 31 H 0.065 0.935 32 H 0.012 0.988 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.168 0.832 36 H 0.186 0.814 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 0.415 -21.557 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.109 3.891 3 H -0.023 1.023 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.789 3.211 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.196 1.196 12 N -0.268 5.268 13 C -0.108 4.108 14 C -0.062 4.062 15 C -0.104 4.104 16 C -0.170 4.170 17 C 0.089 3.911 18 F -0.120 7.120 19 C -0.175 4.175 20 C -0.071 4.071 21 C -0.175 4.175 22 C 0.088 3.912 23 F -0.121 7.121 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.022 0.978 31 H 0.083 0.917 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.185 0.815 36 H 0.204 0.796 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.805 0.027 -21.351 21.366 hybrid contribution 0.698 0.433 1.548 1.753 sum -0.108 0.460 -19.803 19.808 Atomic orbital electron populations 1.21664 0.97334 0.99258 0.99551 1.19065 0.92670 0.90085 0.87304 1.02301 1.21394 1.31386 1.12431 0.90811 0.92026 1.25762 0.95285 0.95753 1.02026 1.70023 1.37705 1.24206 1.24191 0.85524 0.78722 0.78656 0.78202 1.20854 1.19590 1.19586 1.62087 1.10445 1.52306 1.01926 1.22233 0.87699 0.98863 1.02020 1.21986 1.00046 0.94281 0.89861 1.20339 1.02023 0.98654 0.89372 1.19969 0.94691 1.02567 0.99736 1.17591 0.87391 0.92835 0.93270 1.91511 1.71274 1.69171 1.80008 1.21595 1.03249 0.98682 0.93933 1.21331 0.91022 0.94885 0.99864 1.21582 0.98905 1.01842 0.95153 1.17573 0.79798 0.98390 0.95480 1.91489 1.38115 1.93227 1.89242 0.91915 0.95566 0.94922 0.92866 0.91799 0.90632 0.97815 0.91678 0.97008 0.90191 0.90122 0.81485 0.79635 0.81485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.25 8.76 71.98 0.63 -5.62 16 2 C 0.22 11.67 2.06 44.17 0.09 11.76 16 3 H -0.04 -2.45 8.14 -2.39 -0.02 -2.47 16 4 C -0.52 -29.76 7.93 25.60 0.20 -29.56 16 5 H 0.06 3.46 6.39 -2.91 -0.02 3.44 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -54.48 11.32 21.45 0.24 -54.24 16 8 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.54 -25.02 4.62 -901.46 -4.17 -29.19 16 13 C 0.04 1.67 9.05 127.69 1.16 2.83 16 14 C 0.07 2.66 4.76 86.31 0.41 3.07 16 15 C -0.07 -2.16 4.93 29.85 0.15 -2.02 16 16 C -0.17 -4.65 5.15 -19.78 -0.10 -4.75 16 17 C 0.11 2.71 7.24 22.37 0.16 2.87 16 18 F -0.14 -4.10 16.47 44.97 0.74 -3.36 16 19 C -0.16 -2.57 10.02 22.32 0.22 -2.35 16 20 C -0.05 -0.65 10.04 22.25 0.22 -0.42 16 21 C -0.16 -2.53 10.03 22.32 0.22 -2.31 16 22 C 0.11 2.63 7.24 22.37 0.16 2.79 16 23 F -0.14 -3.96 16.48 44.97 0.74 -3.22 16 24 H 0.06 3.55 6.07 -2.39 -0.01 3.53 16 25 H 0.03 1.22 6.20 -2.38 -0.01 1.20 16 26 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.06 2.79 6.23 -2.39 -0.01 2.78 16 29 H 0.08 2.64 6.30 -2.39 -0.02 2.62 16 30 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.06 2.70 5.83 -2.38 -0.01 2.68 16 32 H 0.01 0.49 8.12 -2.39 -0.02 0.47 16 33 H 0.08 2.53 5.97 -2.39 -0.01 2.51 16 34 H 0.08 2.70 7.63 -2.39 -0.02 2.68 16 35 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -66.40 307.92 4.64 -61.76 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.08 Total: 4.35 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.98 Total: -22.68 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -3.92 Total: -83.43 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 1.48 Total: -6.58 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.40 4.64 -61.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402807591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.153 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds