Wall clock time and date at job start Mon Mar 30 2020 01:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47331 * 2 1 4 4 C 1.52999 * 109.46752 * 119.99952 * 2 1 3 5 5 C 1.50708 * 109.47090 * 294.99835 * 4 2 1 6 6 O 1.20824 * 119.99947 * 0.02562 * 5 4 2 7 7 O 1.34227 * 119.99907 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.47097 * 239.99642 * 2 1 3 9 9 C 1.50698 * 109.47153 * 65.00551 * 8 2 1 10 10 O 1.21277 * 120.00330 * 359.97438 * 9 8 2 11 11 N 1.34782 * 120.00135 * 180.02562 * 9 8 2 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 H 1.09000 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47118 * 300.00678 * 1 2 3 26 26 H 1.09001 * 109.46757 * 59.99856 * 1 2 3 27 27 H 1.08996 * 109.47511 * 55.00132 * 4 2 1 28 28 H 1.09005 * 109.47317 * 174.99945 * 4 2 1 29 29 H 0.96695 * 116.99804 * 180.02562 * 7 5 4 30 30 H 1.09005 * 109.47336 * 304.99862 * 8 2 1 31 31 H 1.09009 * 109.47164 * 185.00484 * 8 2 1 32 32 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 34 34 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 35 35 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 36 36 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 37 37 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 38 38 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 39 39 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0133 1.0832 2.3637 7 8 1.9838 -0.3895 3.6952 8 6 2.0400 -0.7213 -1.2491 9 6 1.6415 0.0570 -2.4765 10 8 1.0111 1.0869 -2.3634 11 7 1.9846 -0.3920 -3.7001 12 6 1.5976 0.3648 -4.8933 13 6 2.0017 -0.4157 -6.1456 14 6 3.4838 -0.5982 -6.3476 15 1 3.9681 -1.5014 -6.0067 16 6 4.2207 0.3851 -6.9730 17 7 3.6172 1.4412 -7.4731 18 14 6.0762 0.2175 -7.1096 19 1 6.4073 -1.0156 -7.8679 20 1 6.6290 1.3990 -7.8194 21 1 6.6673 0.1363 -5.7498 22 6 1.0819 -1.5518 -6.5974 23 6 1.1341 -0.2459 -7.3944 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 1.7053 0.1436 4.4524 30 1 1.6054 -1.7199 -1.2950 31 1 3.1264 -0.7996 -1.2055 32 1 2.4884 -1.2160 -3.7907 33 1 2.1011 1.3316 -4.8894 34 1 0.5183 0.5172 -4.8927 35 1 4.1250 2.0971 -7.9760 36 1 1.5488 -2.4313 -7.0408 37 1 0.1886 -1.7429 -6.0026 38 1 0.2753 0.4215 -7.3236 39 1 1.6354 -0.2659 -8.3620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404287252.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:49 Heat of formation + Delta-G solvation = -148.275942 kcal Electronic energy + Delta-G solvation = -20502.006108 eV Core-core repulsion = 17215.728128 eV Total energy + Delta-G solvation = -3286.277980 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38100 -40.61107 -38.54856 -37.29982 -36.13562 -34.87207 -33.93738 -30.31403 -28.90768 -27.76872 -26.67835 -23.55581 -22.91804 -21.39177 -21.22016 -20.52319 -18.97710 -18.40930 -17.82710 -17.25223 -16.96769 -16.68594 -16.46310 -16.28790 -15.49185 -15.42004 -14.65767 -14.42360 -14.26115 -13.85262 -13.62316 -13.39786 -13.17746 -12.94843 -12.81661 -12.75487 -12.55619 -12.37454 -12.11209 -12.01836 -11.97749 -11.67088 -11.38976 -11.34214 -10.91848 -10.71469 -10.41900 -9.98857 -9.76426 -8.07427 -6.22192 1.30783 1.45585 1.46993 1.53399 1.85271 2.14542 2.43693 2.58415 3.20764 3.51680 3.72476 3.95415 4.02693 4.18763 4.29055 4.55623 4.57646 4.63490 4.67973 4.70742 4.74842 4.75321 4.79503 4.98734 5.01180 5.05263 5.20865 5.29855 5.38512 5.51897 5.58355 5.65238 5.73623 5.77625 5.80855 6.38343 6.84321 6.89943 7.08153 7.47784 7.51840 8.99400 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.003875 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.925153 B = 7223.515319 C = 7838.184967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.063 4.063 3 H 0.051 0.949 4 C -0.104 4.104 5 C 0.479 3.521 6 O -0.554 6.554 7 O -0.514 6.514 8 C -0.125 4.125 9 C 0.495 3.505 10 O -0.597 6.597 11 N -0.702 5.702 12 C 0.179 3.821 13 C 0.005 3.995 14 C -0.504 4.504 15 H 0.068 0.932 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.951 3.049 19 H -0.268 1.268 20 H -0.295 1.295 21 H -0.269 1.269 22 C -0.175 4.175 23 C -0.159 4.159 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.424 0.576 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.412 0.588 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.258 0.742 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -10.042 17.568 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.082 4.082 3 H 0.070 0.930 4 C -0.141 4.141 5 C 0.323 3.677 6 O -0.445 6.445 7 O -0.327 6.327 8 C -0.164 4.164 9 C 0.284 3.716 10 O -0.478 6.478 11 N -0.351 5.351 12 C 0.055 3.945 13 C 0.005 3.995 14 C -0.542 4.542 15 H 0.086 0.914 16 C -0.178 4.178 17 N -0.548 5.548 18 Si 0.777 3.223 19 H -0.193 1.193 20 H -0.221 1.221 21 H -0.194 1.194 22 C -0.212 4.212 23 C -0.197 4.197 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.286 0.714 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.248 0.752 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.494 -9.083 17.231 19.536 hybrid contribution 0.756 0.897 -0.261 1.201 sum -0.738 -8.186 16.971 18.856 Atomic orbital electron populations 1.22000 0.95376 1.01963 1.01897 1.20599 0.96438 0.98927 0.92215 0.92996 1.21513 1.05704 1.00476 0.86395 1.23935 0.74716 0.83335 0.85697 1.90738 1.39354 1.26817 1.87585 1.84503 1.74437 1.56598 1.17198 1.21745 1.04802 1.00592 0.89265 1.21512 0.78697 0.85611 0.85800 1.90641 1.42727 1.27142 1.87332 1.45906 1.56434 1.27716 1.05088 1.20490 0.95560 0.93753 0.84731 1.19067 0.92276 0.97116 0.91074 1.20670 0.91343 1.03034 1.39133 0.91407 1.25744 1.02243 0.94745 0.95116 1.70121 1.37353 1.11953 1.35372 0.85720 0.80866 0.77258 0.78416 1.19341 1.22103 1.19374 1.22996 1.01410 0.92342 1.04433 1.22386 1.00994 0.99350 0.96973 0.91160 0.92965 0.93830 0.84269 0.84715 0.71443 0.85170 0.85927 0.75171 0.96075 0.94901 0.93323 0.89519 0.89413 0.91638 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 8.68 71.98 0.62 -3.45 16 2 C -0.06 -1.42 1.68 -10.79 -0.02 -1.43 16 3 H 0.05 1.56 7.77 -2.39 -0.02 1.54 16 4 C -0.10 -1.41 5.29 29.85 0.16 -1.25 16 5 C 0.48 8.83 8.05 71.24 0.57 9.41 16 6 O -0.55 -15.36 14.73 21.97 0.32 -15.04 16 7 O -0.51 -6.39 13.42 -51.39 -0.69 -7.08 16 8 C -0.12 -2.56 5.17 29.85 0.15 -2.41 16 9 C 0.50 16.90 7.55 87.66 0.66 17.56 16 10 O -0.60 -26.12 13.96 -3.02 -0.04 -26.16 16 11 N -0.70 -25.28 5.48 -463.07 -2.54 -27.82 16 12 C 0.18 8.14 5.50 86.38 0.48 8.61 16 13 C 0.01 0.25 1.47 -52.93 -0.08 0.17 16 14 C -0.50 -25.13 8.59 25.60 0.22 -24.91 16 15 H 0.07 3.20 7.82 -2.91 -0.02 3.17 16 16 C 0.02 1.15 5.43 84.65 0.46 1.61 16 17 N -0.91 -51.47 12.65 21.45 0.27 -51.19 16 18 Si 0.95 41.44 29.54 68.60 2.03 43.46 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 C -0.17 -6.84 9.96 30.62 0.30 -6.54 16 23 C -0.16 -7.30 9.14 30.62 0.28 -7.02 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.49 5.96 -2.39 -0.01 1.47 16 26 H 0.04 1.47 5.95 -2.39 -0.01 1.45 16 27 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.42 2.21 9.10 -74.06 -0.67 1.54 16 30 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.41 12.76 8.33 -92.71 -0.77 11.99 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.03 1.50 8.09 -2.38 -0.02 1.48 16 35 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 36 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -73.10 330.37 2.79 -70.31 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.38 Total: 23.16 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 3.82 Total: -9.64 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.27 Total: -79.01 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.41 Total: -48.27 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -73.10 2.79 -70.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404287252.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.966 kcal (2) G-P(sol) polarization free energy of solvation -73.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds