Wall clock time and date at job start Mon Mar 30 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.87321 * 2 1 4 4 C 1.54107 * 109.87690 * 238.99216 * 2 1 3 5 5 C 1.54808 * 104.19058 * 238.39702 * 4 2 1 6 6 H 1.08997 * 110.90649 * 97.31574 * 5 4 2 7 7 C 1.52996 * 110.90722 * 220.88863 * 5 4 2 8 8 C 1.54993 * 102.09050 * 339.11938 * 5 4 2 9 9 H 1.08998 * 110.62233 * 278.52035 * 8 5 4 10 10 C 1.50703 * 110.61859 * 155.52399 * 8 5 4 11 11 O 1.21277 * 119.99977 * 65.65653 * 10 8 5 12 12 N 1.34780 * 120.00250 * 245.66260 * 10 8 5 13 13 C 1.47067 * 136.05306 * 4.54655 * 12 10 8 14 14 C 1.53246 * 88.08110 * 207.20495 * 13 12 10 15 15 O 1.42898 * 114.02038 * 87.71343 * 14 13 12 16 16 C 1.50699 * 114.50592 * 220.45697 * 14 13 12 17 17 H 1.08005 * 119.99896 * 93.84029 * 16 14 13 18 18 C 1.37874 * 119.99890 * 273.84339 * 16 14 13 19 19 N 1.31509 * 120.00368 * 0.02562 * 18 16 14 20 20 Si 1.86808 * 119.99699 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46978 * 90.00313 * 20 18 16 22 22 H 1.48500 * 109.46878 * 209.99745 * 20 18 16 23 23 H 1.48498 * 109.47154 * 330.00172 * 20 18 16 24 24 C 1.47059 * 136.05891 * 184.91595 * 12 10 8 25 25 O 1.43745 * 110.00534 * 121.09270 * 2 1 3 26 26 H 1.08992 * 109.47028 * 181.00550 * 1 2 3 27 27 H 1.09000 * 109.46756 * 301.00641 * 1 2 3 28 28 H 1.09003 * 109.46954 * 61.00284 * 1 2 3 29 29 H 1.09004 * 110.48560 * 119.72086 * 4 2 1 30 30 H 1.08998 * 110.59701 * 357.13218 * 4 2 1 31 31 H 1.09000 * 109.47203 * 55.56372 * 7 5 4 32 32 H 1.09003 * 109.46921 * 175.56522 * 7 5 4 33 33 H 1.08999 * 109.47421 * 295.56426 * 7 5 4 34 34 H 1.09003 * 113.47276 * 321.93106 * 13 12 10 35 35 H 1.08991 * 113.47337 * 92.37976 * 13 12 10 36 36 H 0.96704 * 114.00176 * 86.38663 * 15 14 13 37 37 H 0.96997 * 120.00158 * 179.97438 * 19 18 16 38 38 H 1.09003 * 113.46905 * 267.61926 * 24 12 10 39 39 H 1.09002 * 113.46927 * 38.06423 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0540 -0.7466 -1.2422 5 6 2.9227 -1.8883 -0.6604 6 1 2.3591 -2.8200 -0.6123 7 6 4.2040 -2.0696 -1.4765 8 6 3.2418 -1.3610 0.7618 9 1 4.0709 -0.6540 0.7320 10 6 3.5503 -2.5037 1.6946 11 8 4.5391 -3.1826 1.5156 12 7 2.7273 -2.7712 2.7278 13 6 1.4386 -2.2572 3.2156 14 6 1.8600 -2.6853 4.6254 15 8 2.6057 -1.6945 5.3357 16 6 0.7580 -3.3036 5.4466 17 1 0.6340 -4.3764 5.4633 18 6 -0.0919 -2.4999 6.1763 19 7 0.0588 -1.1936 6.1555 20 14 -1.4584 -3.2664 7.1936 21 1 -0.9561 -3.5527 8.5615 22 1 -2.6036 -2.3245 7.2739 23 1 -1.9015 -4.5313 6.5542 24 6 2.7258 -3.7010 3.8672 25 8 2.0218 -0.6975 1.1567 26 1 -0.3633 -1.0274 0.0180 27 1 -0.3633 0.5294 0.8808 28 1 -0.3633 0.4982 -0.8989 29 1 2.6598 -0.0827 -1.8589 30 1 1.2260 -1.1546 -1.8219 31 1 4.7425 -1.1230 -1.5225 32 1 4.8332 -2.8230 -1.0024 33 1 3.9492 -2.3921 -2.4861 34 1 1.3317 -1.1780 3.1051 35 1 0.5790 -2.8076 2.8337 36 1 2.0574 -1.0561 5.8122 37 1 -0.5394 -0.6282 6.6686 38 1 2.2124 -4.6401 3.6604 39 1 3.7112 -3.8472 4.3095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407969463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:59 Heat of formation + Delta-G solvation = -96.903884 kcal Electronic energy + Delta-G solvation = -21948.592560 eV Core-core repulsion = 18664.542239 eV Total energy + Delta-G solvation = -3284.050320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21550 -38.85323 -37.18674 -33.97691 -33.41486 -32.12837 -32.07089 -28.84866 -26.79936 -26.51881 -24.96452 -24.75379 -21.65637 -20.70439 -19.97125 -18.39224 -17.42208 -16.39113 -16.19688 -15.84984 -15.22023 -14.90809 -14.63205 -14.12611 -13.83202 -13.76775 -13.14451 -12.91679 -12.68964 -12.42986 -12.40959 -12.11581 -11.94260 -11.83971 -11.49877 -11.44762 -11.31865 -11.03333 -10.82551 -10.62915 -10.57517 -10.40078 -10.12113 -9.71500 -9.46211 -9.10319 -8.70209 -8.24199 -7.75240 -6.33725 -4.43734 3.11688 3.17938 3.25562 3.28263 3.61290 3.84360 4.22501 4.48638 4.69064 4.82336 4.88760 4.99606 5.19519 5.30426 5.37217 5.44436 5.57917 5.65654 5.67584 5.73367 5.81885 5.86864 6.07468 6.09707 6.15597 6.25209 6.25876 6.27263 6.50474 6.68704 6.72686 6.97191 7.07063 7.21492 7.69305 7.88723 8.54922 8.59669 8.79924 9.27000 9.57922 10.72871 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.005915 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.567376 B = 4732.747092 C = 5429.541778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.067 3.933 3 H 0.067 0.933 4 C -0.146 4.146 5 C -0.105 4.105 6 H 0.085 0.915 7 C -0.142 4.142 8 C 0.071 3.929 9 H 0.096 0.904 10 C 0.545 3.455 11 O -0.564 6.564 12 N -0.619 5.619 13 C 0.088 3.912 14 C 0.235 3.765 15 O -0.573 6.573 16 C -0.532 4.532 17 H 0.071 0.929 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.103 3.897 25 O -0.348 6.348 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.393 0.607 37 H 0.273 0.727 38 H 0.084 0.916 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 2.864 -12.586 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.010 3.990 3 H 0.085 0.915 4 C -0.184 4.184 5 C -0.125 4.125 6 H 0.103 0.897 7 C -0.199 4.199 8 C 0.010 3.990 9 H 0.113 0.887 10 C 0.333 3.667 11 O -0.446 6.446 12 N -0.350 5.350 13 C -0.035 4.035 14 C 0.193 3.807 15 O -0.386 6.386 16 C -0.570 4.570 17 H 0.089 0.911 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.019 4.019 25 O -0.268 6.268 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.250 0.750 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.864 2.419 -12.805 13.060 hybrid contribution -1.200 0.097 0.456 1.288 sum -0.336 2.516 -12.348 12.607 Atomic orbital electron populations 1.21910 0.93544 1.02999 1.02237 1.22747 0.95434 0.95714 0.85136 0.91521 1.23120 0.99929 0.97267 0.98101 1.22529 0.97478 0.99214 0.93247 0.89662 1.21747 0.96318 1.02601 0.99254 1.23305 0.89585 0.92853 0.93233 0.88678 1.19542 0.82754 0.84662 0.79738 1.90652 1.29007 1.51887 1.73046 1.49667 1.22877 1.38295 1.24192 1.24073 0.83501 1.00470 0.95417 1.19565 0.87968 0.85758 0.87378 1.86028 1.38737 1.45000 1.68799 1.21422 1.12810 0.94166 1.28647 0.91080 1.25063 0.97515 0.94766 0.95670 1.69277 1.39383 1.03344 1.41704 0.86341 0.80716 0.79139 0.80355 1.20284 1.20939 1.19592 1.23382 1.00623 0.94418 0.83463 1.89161 1.38235 1.67306 1.32050 0.91820 0.91514 0.91667 0.90528 0.90230 0.92511 0.90978 0.92400 0.90114 0.90795 0.75022 0.91667 0.89826 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.37 37.16 0.35 -1.42 16 2 C 0.07 0.87 4.05 -26.15 -0.11 0.77 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.15 -1.60 6.22 -25.20 -0.16 -1.76 16 5 C -0.11 -1.43 3.14 -88.62 -0.28 -1.71 16 6 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 7 C -0.14 -1.69 9.15 37.16 0.34 -1.35 16 8 C 0.07 1.20 3.30 -26.83 -0.09 1.11 16 9 H 0.10 1.52 8.05 -51.93 -0.42 1.10 16 10 C 0.54 11.56 7.45 -10.98 -0.08 11.48 16 11 O -0.56 -13.09 17.17 5.56 0.10 -12.99 16 12 N -0.62 -13.88 3.68 -185.37 -0.68 -14.56 16 13 C 0.09 2.01 6.70 -8.64 -0.06 1.95 16 14 C 0.24 5.85 1.57 -91.39 -0.14 5.71 16 15 O -0.57 -15.31 13.53 -35.23 -0.48 -15.79 16 16 C -0.53 -13.62 8.70 -34.44 -0.30 -13.92 16 17 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 18 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 19 N -0.90 -23.13 11.01 55.43 0.61 -22.52 16 20 Si 0.91 19.63 29.54 -169.99 -5.02 14.61 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C 0.10 2.36 8.04 -8.51 -0.07 2.29 16 25 O -0.35 -6.05 7.63 -35.23 -0.27 -6.31 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 30 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.07 1.01 7.47 -51.93 -0.39 0.62 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.92 6.49 -51.93 -0.34 1.58 16 35 H 0.07 1.63 8.10 -51.93 -0.42 1.21 16 36 H 0.39 10.60 6.33 45.56 0.29 10.89 16 37 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 39 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -28.87 318.20 -7.06 -35.93 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.42 Total: 11.95 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -0.69 Total: 4.89 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.07 Total: -37.08 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.65 Total: -35.10 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.87 -7.06 -35.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407969463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.976 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds