Wall clock time and date at job start Mon Mar 30 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.87321 * 2 1 4 4 C 1.54107 * 109.87690 * 238.99216 * 2 1 3 5 5 C 1.54808 * 104.19058 * 238.39702 * 4 2 1 6 6 H 1.08997 * 110.90649 * 97.31574 * 5 4 2 7 7 C 1.52996 * 110.90722 * 220.88863 * 5 4 2 8 8 C 1.54993 * 102.09050 * 339.11938 * 5 4 2 9 9 H 1.08998 * 110.62233 * 278.52035 * 8 5 4 10 10 C 1.50703 * 110.61859 * 155.52399 * 8 5 4 11 11 O 1.21277 * 119.99977 * 65.65653 * 10 8 5 12 12 N 1.34780 * 120.00250 * 245.66260 * 10 8 5 13 13 C 1.47067 * 136.05306 * 4.54655 * 12 10 8 14 14 C 1.53246 * 88.08110 * 207.20495 * 13 12 10 15 15 O 1.42898 * 114.02038 * 87.71343 * 14 13 12 16 16 C 1.50699 * 114.50592 * 220.45697 * 14 13 12 17 17 H 1.08005 * 119.99896 * 93.84029 * 16 14 13 18 18 C 1.37874 * 119.99890 * 273.84339 * 16 14 13 19 19 N 1.31509 * 120.00368 * 0.02562 * 18 16 14 20 20 Si 1.86808 * 119.99699 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46978 * 90.00313 * 20 18 16 22 22 H 1.48500 * 109.46878 * 209.99745 * 20 18 16 23 23 H 1.48498 * 109.47154 * 330.00172 * 20 18 16 24 24 C 1.47059 * 136.05891 * 184.91595 * 12 10 8 25 25 O 1.43745 * 110.00534 * 121.09270 * 2 1 3 26 26 H 1.08992 * 109.47028 * 181.00550 * 1 2 3 27 27 H 1.09000 * 109.46756 * 301.00641 * 1 2 3 28 28 H 1.09003 * 109.46954 * 61.00284 * 1 2 3 29 29 H 1.09004 * 110.48560 * 119.72086 * 4 2 1 30 30 H 1.08998 * 110.59701 * 357.13218 * 4 2 1 31 31 H 1.09000 * 109.47203 * 55.56372 * 7 5 4 32 32 H 1.09003 * 109.46921 * 175.56522 * 7 5 4 33 33 H 1.08999 * 109.47421 * 295.56426 * 7 5 4 34 34 H 1.09003 * 113.47276 * 321.93106 * 13 12 10 35 35 H 1.08991 * 113.47337 * 92.37976 * 13 12 10 36 36 H 0.96704 * 114.00176 * 86.38663 * 15 14 13 37 37 H 0.96997 * 120.00158 * 179.97438 * 19 18 16 38 38 H 1.09003 * 113.46905 * 267.61926 * 24 12 10 39 39 H 1.09002 * 113.46927 * 38.06423 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0540 -0.7466 -1.2422 5 6 2.9227 -1.8883 -0.6604 6 1 2.3591 -2.8200 -0.6123 7 6 4.2040 -2.0696 -1.4765 8 6 3.2418 -1.3610 0.7618 9 1 4.0709 -0.6540 0.7320 10 6 3.5503 -2.5037 1.6946 11 8 4.5391 -3.1826 1.5156 12 7 2.7273 -2.7712 2.7278 13 6 1.4386 -2.2572 3.2156 14 6 1.8600 -2.6853 4.6254 15 8 2.6057 -1.6945 5.3357 16 6 0.7580 -3.3036 5.4466 17 1 0.6340 -4.3764 5.4633 18 6 -0.0919 -2.4999 6.1763 19 7 0.0588 -1.1936 6.1555 20 14 -1.4584 -3.2664 7.1936 21 1 -0.9561 -3.5527 8.5615 22 1 -2.6036 -2.3245 7.2739 23 1 -1.9015 -4.5313 6.5542 24 6 2.7258 -3.7010 3.8672 25 8 2.0218 -0.6975 1.1567 26 1 -0.3633 -1.0274 0.0180 27 1 -0.3633 0.5294 0.8808 28 1 -0.3633 0.4982 -0.8989 29 1 2.6598 -0.0827 -1.8589 30 1 1.2260 -1.1546 -1.8219 31 1 4.7425 -1.1230 -1.5225 32 1 4.8332 -2.8230 -1.0024 33 1 3.9492 -2.3921 -2.4861 34 1 1.3317 -1.1780 3.1051 35 1 0.5790 -2.8076 2.8337 36 1 2.0574 -1.0561 5.8122 37 1 -0.5394 -0.6282 6.6686 38 1 2.2124 -4.6401 3.6604 39 1 3.7112 -3.8472 4.3095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407969463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:59 Heat of formation + Delta-G solvation = -117.138118 kcal Electronic energy + Delta-G solvation = -21949.469982 eV Core-core repulsion = 18664.542239 eV Total energy + Delta-G solvation = -3284.927743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68302 -40.39542 -38.92239 -35.90147 -34.55017 -34.11507 -33.17473 -30.59404 -28.11806 -27.68476 -26.81171 -26.42344 -22.78684 -22.01342 -21.45118 -20.13774 -19.32170 -17.88776 -17.73399 -17.18657 -16.90749 -16.47606 -16.18792 -15.90644 -15.26271 -15.08106 -14.58557 -14.43421 -14.09015 -13.92720 -13.74120 -13.46033 -13.39990 -13.21730 -12.87492 -12.82495 -12.77843 -12.43175 -12.38775 -12.21340 -12.03813 -11.65998 -11.52829 -11.35623 -10.93868 -10.73496 -10.61176 -10.14458 -9.59376 -8.25944 -6.43534 1.46384 1.47417 1.50239 1.59783 1.95665 2.41309 2.64326 2.95071 3.38465 3.46653 3.72016 3.82295 3.93477 4.07168 4.11893 4.23008 4.39839 4.44649 4.47681 4.56589 4.62465 4.77025 4.81772 4.82660 4.86554 4.92363 5.00344 5.14856 5.15008 5.19330 5.26325 5.31995 5.32912 5.73580 5.87615 5.92176 6.61737 6.82628 7.06823 7.30116 7.49458 8.80523 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.005915 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.567376 B = 4732.747092 C = 5429.541778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 H 0.080 0.920 4 C -0.132 4.132 5 C -0.102 4.102 6 H 0.070 0.930 7 C -0.137 4.137 8 C 0.071 3.929 9 H 0.106 0.894 10 C 0.535 3.465 11 O -0.589 6.589 12 N -0.626 5.626 13 C 0.109 3.891 14 C 0.215 3.785 15 O -0.587 6.587 16 C -0.553 4.553 17 H 0.074 0.926 18 C 0.032 3.968 19 N -0.917 5.917 20 Si 0.972 3.028 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.265 1.265 24 C 0.103 3.897 25 O -0.379 6.379 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.389 0.611 37 H 0.276 0.724 38 H 0.101 0.899 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 3.249 -14.285 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.001 4.001 3 H 0.098 0.902 4 C -0.169 4.169 5 C -0.121 4.121 6 H 0.088 0.912 7 C -0.194 4.194 8 C 0.011 3.989 9 H 0.124 0.876 10 C 0.326 3.674 11 O -0.472 6.472 12 N -0.357 5.357 13 C -0.014 4.014 14 C 0.174 3.826 15 O -0.400 6.400 16 C -0.591 4.591 17 H 0.092 0.908 18 C -0.169 4.169 19 N -0.558 5.558 20 Si 0.797 3.203 21 H -0.203 1.203 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.019 4.019 25 O -0.300 6.300 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.125 2.807 -14.525 14.794 hybrid contribution -0.852 0.001 0.989 1.305 sum -0.977 2.808 -13.537 13.859 Atomic orbital electron populations 1.21925 0.92882 1.02489 1.03077 1.23071 0.96037 0.96236 0.84724 0.90207 1.23092 1.00245 0.96240 0.97311 1.22541 0.98650 0.99504 0.91427 0.91182 1.21720 0.95082 1.02686 0.99906 1.23322 0.90170 0.91626 0.93779 0.87645 1.20433 0.81937 0.85414 0.79659 1.90624 1.29816 1.53092 1.73681 1.49756 1.23031 1.38290 1.24611 1.23745 0.83807 0.99677 0.94160 1.19847 0.88564 0.86054 0.88132 1.86010 1.39394 1.45423 1.69172 1.21643 1.13396 0.94493 1.29576 0.90780 1.25798 0.99490 0.95143 0.96441 1.69343 1.40054 1.04311 1.42070 0.85334 0.77930 0.78476 0.78555 1.20286 1.20491 1.18949 1.23380 0.99929 0.94932 0.83708 1.89124 1.38317 1.67896 1.34621 0.92867 0.93216 0.88376 0.87784 0.88428 0.90937 0.93704 0.89840 0.91285 0.90287 0.75542 0.91357 0.88061 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.37 71.98 0.67 -2.51 16 2 C 0.06 1.33 4.05 30.97 0.13 1.46 16 3 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 4 C -0.13 -2.42 6.22 31.59 0.20 -2.22 16 5 C -0.10 -2.57 3.14 -9.50 -0.03 -2.60 16 6 H 0.07 1.97 8.05 -2.39 -0.02 1.96 16 7 C -0.14 -2.93 9.15 71.98 0.66 -2.27 16 8 C 0.07 2.37 3.30 30.53 0.10 2.47 16 9 H 0.11 3.26 8.05 -2.39 -0.02 3.24 16 10 C 0.54 22.95 7.45 87.66 0.65 23.60 16 11 O -0.59 -27.72 17.17 -3.02 -0.05 -27.77 16 12 N -0.63 -28.48 3.68 -859.26 -3.17 -31.64 16 13 C 0.11 5.04 6.70 83.09 0.56 5.60 16 14 C 0.22 10.91 1.57 -11.29 -0.02 10.89 16 15 O -0.59 -32.26 13.53 -148.98 -2.02 -34.27 16 16 C -0.55 -28.43 8.70 25.60 0.22 -28.20 16 17 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 18 C 0.03 1.59 5.39 84.65 0.46 2.05 16 19 N -0.92 -47.54 11.01 21.45 0.24 -47.30 16 20 Si 0.97 39.85 29.54 68.60 2.03 41.87 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 24 C 0.10 4.79 8.04 83.18 0.67 5.46 16 25 O -0.38 -12.97 7.63 -148.98 -1.14 -14.11 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.40 7.85 -2.39 -0.02 1.38 16 30 H 0.10 1.49 7.70 -2.39 -0.02 1.47 16 31 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.04 1.21 7.47 -2.39 -0.02 1.19 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 34 H 0.07 3.35 6.49 -2.39 -0.02 3.34 16 35 H 0.08 3.53 8.10 -2.39 -0.02 3.51 16 36 H 0.39 21.58 6.33 -74.05 -0.47 21.11 16 37 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 38 H 0.10 4.27 8.10 -2.39 -0.02 4.25 16 39 H 0.05 2.59 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -62.58 318.20 0.74 -61.84 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.58 Total: 37.66 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 4.27 Total: 13.71 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -2.93 Total: -78.94 kcal Atomic # 8 Polarization: -72.94 SS G_CDS: -3.20 Total: -76.15 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.87 kcal Total: -62.58 0.74 -61.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407969463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.296 kcal (2) G-P(sol) polarization free energy of solvation -62.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds