Wall clock time and date at job start Mon Mar 30 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50706 * 109.46925 * 239.99957 * 2 1 3 5 5 H 1.07998 * 119.99629 * 240.00072 * 4 2 1 6 6 C 1.37875 * 119.99955 * 60.00643 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47474 * 89.99404 * 8 6 4 10 10 H 1.48504 * 109.47121 * 209.99526 * 8 6 4 11 11 H 1.48499 * 109.47026 * 329.99368 * 8 6 4 12 12 N 1.46500 * 109.46766 * 120.00216 * 2 1 3 13 13 C 1.34776 * 119.99813 * 274.99934 * 12 2 1 14 14 O 1.21281 * 119.99860 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99895 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.85652 * 304.29701 * 15 13 12 17 17 O 1.43346 * 109.86425 * 183.32119 * 15 13 12 18 18 C 1.44253 * 109.82808 * 240.57324 * 17 15 13 19 19 C 1.53991 * 104.54197 * 336.26519 * 18 17 15 20 20 H 1.09004 * 109.50832 * 281.44790 * 19 18 17 21 21 C 1.50953 * 112.61015 * 159.10269 * 19 18 17 22 22 O 1.42681 * 111.79136 * 293.72039 * 21 19 18 23 23 C 1.43257 * 112.52932 * 299.93536 * 22 21 19 24 24 C 1.52720 * 108.26435 * 65.59936 * 23 22 21 25 25 C 1.53124 * 110.61363 * 299.80136 * 24 23 22 26 26 H 1.08999 * 112.27745 * 283.03229 * 25 24 23 27 27 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 29 29 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 30 30 H 0.97003 * 119.99476 * 180.02562 * 7 6 4 31 31 H 0.96998 * 119.99878 * 95.00286 * 12 2 1 32 32 H 1.09005 * 110.35670 * 217.53380 * 18 17 15 33 33 H 1.08999 * 110.48806 * 95.06443 * 18 17 15 34 34 H 1.08998 * 109.01936 * 173.12612 * 21 19 18 35 35 H 1.08996 * 109.01554 * 54.31799 * 21 19 18 36 36 H 1.08998 * 109.70675 * 305.90479 * 23 22 21 37 37 H 1.09004 * 109.70818 * 185.28697 * 23 22 21 38 38 H 1.09006 * 109.25018 * 179.51373 * 24 23 22 39 39 H 1.08996 * 109.25023 * 60.09228 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3449 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1121 11 1 3.6309 -1.7565 -3.7120 12 7 2.0183 -0.6907 1.1962 13 6 2.1469 -0.0183 2.3571 14 8 1.8590 1.1585 2.4114 15 6 2.6497 -0.7286 3.5875 16 1 2.0255 -1.5979 3.7942 17 8 2.6280 0.1644 4.7086 18 6 3.9632 0.3285 5.2293 19 6 4.7118 -0.9404 4.7810 20 1 4.4444 -1.7708 5.4346 21 6 6.2103 -0.7588 4.7759 22 8 6.6262 0.1848 3.7898 23 6 6.2570 -0.2091 2.4629 24 6 4.7329 -0.1974 2.3667 25 6 4.1216 -1.1746 3.3748 26 1 4.2019 -2.2109 3.0466 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.7084 1.1609 -3.4844 31 1 2.2490 -1.6318 1.1526 32 1 3.9407 0.3924 6.3173 33 1 4.4318 1.2164 4.8050 34 1 6.6837 -1.7189 4.5706 35 1 6.5292 -0.4101 5.7581 36 1 6.6303 -1.2129 2.2602 37 1 6.6761 0.4921 1.7413 38 1 4.4341 -0.4869 1.3592 39 1 4.3675 0.8083 2.5743 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408219401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:47 Heat of formation + Delta-G solvation = -130.767450 kcal Electronic energy + Delta-G solvation = -22015.122913 eV Core-core repulsion = 18729.604158 eV Total energy + Delta-G solvation = -3285.518755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02738 -38.54909 -37.30634 -34.73545 -33.30524 -32.29960 -31.83036 -29.52026 -27.99445 -25.54197 -25.26640 -23.60718 -23.22659 -20.79138 -19.65158 -19.25212 -17.33114 -17.03008 -16.27198 -16.11609 -15.59374 -15.26939 -15.18785 -14.79331 -14.34516 -13.80442 -13.59425 -13.29989 -12.99537 -12.70961 -12.41343 -12.08996 -12.00805 -11.66507 -11.62737 -11.12572 -10.99038 -10.90577 -10.73713 -10.65186 -10.35725 -10.27113 -10.24912 -9.99918 -9.55187 -9.05631 -8.71025 -8.54352 -7.89789 -6.13863 -4.23644 3.22029 3.28531 3.29159 3.30590 3.68347 3.81203 4.08405 4.21230 4.34249 4.56330 4.81635 4.87671 4.94612 5.18046 5.19612 5.22131 5.30128 5.39473 5.42964 5.49982 5.58156 5.63853 5.75339 5.85012 5.95365 6.12848 6.39428 6.82052 6.93809 6.97767 7.03530 7.15673 7.45765 7.56219 7.68339 7.90745 8.14169 8.65046 8.77308 9.13039 9.44285 10.91994 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024858 B = 0.005641 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.111085 B = 4962.559547 C = 5705.416181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.709 5.709 13 C 0.496 3.504 14 O -0.537 6.537 15 C 0.062 3.938 16 H 0.097 0.903 17 O -0.352 6.352 18 C 0.058 3.942 19 C -0.155 4.155 20 H 0.092 0.908 21 C 0.074 3.926 22 O -0.376 6.376 23 C 0.062 3.938 24 C -0.167 4.167 25 C -0.102 4.102 26 H 0.104 0.896 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.090 0.910 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -7.140 12.628 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.280 3.720 14 O -0.415 6.415 15 C 0.001 3.999 16 H 0.114 0.886 17 O -0.270 6.270 18 C -0.018 4.018 19 C -0.174 4.174 20 H 0.111 0.889 21 C -0.003 4.003 22 O -0.295 6.295 23 C -0.015 4.015 24 C -0.204 4.204 25 C -0.121 4.121 26 H 0.122 0.878 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.948 -5.854 12.631 16.549 hybrid contribution 0.242 -1.347 -1.052 1.726 sum 9.190 -7.201 11.579 16.443 Atomic orbital electron populations 1.22086 0.98574 0.99087 1.00920 1.18723 0.90990 0.93946 0.79878 0.93425 1.21191 1.32533 1.13155 0.90283 0.92125 1.24889 0.94836 0.94921 0.99043 1.69908 1.35778 1.22385 1.23883 0.86463 0.79116 0.79278 0.82304 1.20569 1.21076 1.19897 1.46533 1.65638 1.13413 1.10344 1.20509 0.78846 0.87960 0.84686 1.90676 1.50213 1.15858 1.84707 1.23003 0.96917 0.92643 0.87350 0.88553 1.88632 1.27024 1.66831 1.44520 1.23333 0.82559 0.97095 0.98824 1.22703 0.97449 1.00007 0.97270 0.88930 1.21808 0.91869 0.93470 0.93199 1.88131 1.78563 1.46887 1.15911 1.22618 0.94226 1.00472 0.84147 1.22440 0.96317 1.00925 1.00761 1.22640 0.93295 1.00785 0.95404 0.87756 0.95495 0.96648 0.89179 0.92556 0.78131 0.89579 0.91170 0.92869 0.88758 0.92829 0.88384 0.88669 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.27 6.70 2.56 -69.08 -0.18 6.52 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.76 8.73 -34.44 -0.30 -14.06 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.71 11.32 55.43 0.63 -24.09 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.71 -14.40 4.11 -54.93 -0.23 -14.62 16 13 C 0.50 10.11 4.96 -10.99 -0.05 10.05 16 14 O -0.54 -13.60 15.99 -14.06 -0.22 -13.83 16 15 C 0.06 0.97 3.73 -26.69 -0.10 0.87 16 16 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 17 O -0.35 -6.00 10.61 -54.85 -0.58 -6.58 16 18 C 0.06 0.76 6.79 37.67 0.26 1.02 16 19 C -0.16 -1.63 3.02 -90.45 -0.27 -1.90 16 20 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 21 C 0.07 0.71 6.17 36.13 0.22 0.93 16 22 O -0.38 -4.77 10.58 -35.23 -0.37 -5.14 16 23 C 0.06 0.76 6.82 37.01 0.25 1.01 16 24 C -0.17 -2.43 3.94 -26.81 -0.11 -2.53 16 25 C -0.10 -1.26 3.61 -88.68 -0.32 -1.58 16 26 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 6.66 8.54 -40.82 -0.35 6.31 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.03 7.49 -51.93 -0.39 0.64 16 34 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.53 7.05 -51.93 -0.37 1.16 16 39 H 0.08 1.51 6.37 -51.93 -0.33 1.18 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -31.97 308.86 -7.40 -39.37 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.91 Total: 6.33 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.35 Total: -1.39 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.40 Total: -38.71 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.18 Total: -25.54 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.97 -7.40 -39.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408219401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.393 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds