Wall clock time and date at job start Mon Mar 30 2020 01:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 H 1.07997 * 120.00519 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99591 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00351 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47029 * 89.99533 * 9 7 5 11 11 H 1.48501 * 109.47242 * 209.99531 * 9 7 5 12 12 H 1.48502 * 109.46995 * 329.99448 * 9 7 5 13 13 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 14 14 C 1.46903 * 110.99807 * 84.99961 * 13 2 1 15 15 H 1.08997 * 109.47215 * 324.99479 * 14 13 2 16 16 C 1.53001 * 109.47293 * 85.00045 * 14 13 2 17 17 C 1.50699 * 109.47050 * 204.99742 * 14 13 2 18 18 C 1.38261 * 119.96721 * 139.99770 * 17 14 13 19 19 C 1.38210 * 120.07445 * 180.02562 * 18 17 14 20 20 C 1.38416 * 119.99948 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.03559 * 180.02562 * 20 19 18 22 22 C 1.38648 * 119.92609 * 0.02562 * 20 19 18 23 23 F 1.35102 * 120.03168 * 179.97438 * 22 20 19 24 24 C 1.38214 * 119.96680 * 319.73148 * 17 14 13 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 29 29 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 30 30 H 0.97002 * 120.00100 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99898 * 208.95281 * 13 2 1 32 32 H 1.08998 * 109.46899 * 299.99701 * 16 14 13 33 33 H 1.09004 * 109.47059 * 59.99551 * 16 14 13 34 34 H 1.08995 * 109.47229 * 179.97438 * 16 14 13 35 35 H 1.07998 * 119.95873 * 359.97438 * 18 17 14 36 36 H 1.07995 * 120.00215 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.99924 * 359.97184 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2305 -1.1935 2.3577 8 7 3.5765 -1.8378 3.2994 9 14 6.0922 -1.0622 2.4361 10 1 6.4709 0.1600 3.1897 11 1 6.6443 -2.2578 3.1223 12 1 6.6413 -0.9845 1.0585 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2228 -2.3469 15 1 1.2576 0.9330 -2.2907 16 6 3.4111 0.9811 -2.3223 17 6 1.9787 -0.5674 -3.6259 18 6 1.2288 -0.0796 -4.6801 19 6 1.1317 -0.8026 -5.8539 20 6 1.7860 -2.0163 -5.9753 21 9 1.6920 -2.7234 -7.1226 22 6 2.5380 -2.5055 -4.9182 23 9 3.1771 -3.6901 -5.0341 24 6 2.6377 -1.7763 -3.7459 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 4.0608 -2.2446 4.0348 31 1 2.9174 -1.1204 -1.0288 32 1 3.4862 1.5526 -1.3972 33 1 4.2360 0.2708 -2.3785 34 1 3.4579 1.6598 -3.1739 35 1 0.7178 0.8672 -4.5858 36 1 0.5453 -0.4207 -6.6765 37 1 3.2271 -2.1541 -2.9235 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411438727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:03 Heat of formation + Delta-G solvation = -83.424859 kcal Electronic energy + Delta-G solvation = -20385.908332 eV Core-core repulsion = 16991.354990 eV Total energy + Delta-G solvation = -3394.553342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.41704 -48.49166 -39.42249 -36.91567 -33.60973 -32.09572 -30.81267 -29.37920 -27.61483 -27.44506 -23.93132 -23.25067 -22.78983 -20.64530 -19.52908 -17.92095 -17.05665 -16.87287 -16.38282 -16.26069 -15.18895 -15.02186 -14.91450 -14.48696 -14.35722 -14.00151 -13.86423 -13.43000 -12.88216 -12.69847 -12.56273 -12.23043 -11.84731 -11.62465 -11.61009 -11.32456 -11.25290 -11.05211 -10.77876 -10.68165 -10.49843 -10.29179 -9.33124 -9.11899 -9.03036 -8.60016 -8.43615 -7.77684 -6.07035 -4.10664 0.92560 1.02928 3.26282 3.34035 3.34930 3.37018 3.80346 4.34726 4.39003 4.50705 4.56687 4.83850 5.07606 5.18419 5.30664 5.36562 5.48030 5.64921 5.81690 5.85033 5.89481 5.92104 5.96513 6.06898 6.17340 6.24194 6.30868 6.49166 6.53293 6.76467 6.87582 6.88370 7.44421 7.58431 7.91421 7.96419 8.14498 8.31308 8.95700 9.54024 11.03773 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.004815 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.198024 B = 5813.955325 C = 6432.917436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.089 3.911 3 H 0.033 0.967 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.053 0.947 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.118 3.882 15 H 0.086 0.914 16 C -0.177 4.177 17 C -0.035 4.035 18 C -0.102 4.102 19 C -0.127 4.127 20 C 0.052 3.948 21 F -0.135 7.135 22 C 0.067 3.933 23 F -0.131 7.131 24 C -0.103 4.103 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.357 0.643 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 4.342 -15.940 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.051 0.949 4 C -0.017 4.017 5 C -0.564 4.564 6 H 0.071 0.929 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.310 5.310 14 C 0.007 3.993 15 H 0.104 0.896 16 C -0.236 4.236 17 C -0.036 4.036 18 C -0.120 4.120 19 C -0.146 4.146 20 C 0.032 3.968 21 F -0.114 7.114 22 C 0.047 3.953 23 F -0.110 7.110 24 C -0.122 4.122 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.179 0.821 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.842 3.901 -15.961 17.130 hybrid contribution 1.942 0.145 0.140 1.952 sum -2.900 4.046 -15.822 16.586 Atomic orbital electron populations 1.21818 0.96670 1.01444 0.99486 1.21629 0.93282 0.96061 0.91077 0.94915 1.19279 0.95460 0.96238 0.90758 1.21163 0.92144 1.34645 1.08428 0.92888 1.24984 0.98160 0.95139 0.95734 1.69957 1.35539 1.35427 1.11902 0.86663 0.85974 0.77574 0.78183 1.20751 1.21198 1.19908 1.60697 1.34903 1.31266 1.04161 1.20495 0.97545 0.92631 0.88597 0.89568 1.22495 0.97763 1.01012 1.02324 1.19921 0.94250 0.93899 0.95531 1.20941 0.98930 1.00257 0.91886 1.20965 1.00736 0.93115 0.99778 1.17667 1.03008 0.93368 0.82804 1.91495 1.94990 1.77939 1.46990 1.17725 0.98030 0.84259 0.95248 1.91522 1.79648 1.43453 1.96372 1.20997 1.00833 0.94664 0.95746 0.92605 0.93254 0.94505 0.96004 0.95580 0.92910 0.82132 0.91357 0.92136 0.92658 0.84539 0.84077 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.40 37.16 0.35 -1.93 16 2 C 0.09 1.69 2.40 -67.71 -0.16 1.52 16 3 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 4 C 0.02 0.48 4.57 -27.89 -0.13 0.35 16 5 C -0.53 -13.69 8.12 -34.44 -0.28 -13.97 16 6 H 0.05 1.32 7.49 -52.49 -0.39 0.93 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.68 -11.66 5.52 -100.95 -0.56 -12.21 16 14 C 0.12 1.62 2.60 -68.86 -0.18 1.44 16 15 H 0.09 1.11 6.97 -51.93 -0.36 0.75 16 16 C -0.18 -2.36 9.12 37.16 0.34 -2.02 16 17 C -0.03 -0.45 4.95 -104.62 -0.52 -0.96 16 18 C -0.10 -1.07 9.66 -39.58 -0.38 -1.45 16 19 C -0.13 -1.33 10.02 -39.53 -0.40 -1.73 16 20 C 0.05 0.67 7.31 -39.36 -0.29 0.38 16 21 F -0.14 -1.83 17.18 2.25 0.04 -1.79 16 22 C 0.07 0.95 7.31 -39.37 -0.29 0.67 16 23 F -0.13 -2.01 17.18 2.25 0.04 -1.97 16 24 C -0.10 -1.44 9.30 -39.53 -0.37 -1.80 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.53 7.43 -51.93 -0.39 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 31 H 0.36 6.75 6.30 -39.29 -0.25 6.50 16 32 H 0.07 1.00 7.43 -51.93 -0.39 0.61 16 33 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.14 1.09 8.03 -52.49 -0.42 0.67 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.15 2.13 7.25 -52.49 -0.38 1.75 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -28.20 317.47 -7.42 -35.62 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.04 Total: 2.74 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.40 Total: -17.91 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.18 Total: -37.28 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.20 -7.42 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411438727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.806 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds