Wall clock time and date at job start Mon Mar 30 2020 01:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 H 1.07997 * 120.00519 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99591 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00351 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47029 * 89.99533 * 9 7 5 11 11 H 1.48501 * 109.47242 * 209.99531 * 9 7 5 12 12 H 1.48502 * 109.46995 * 329.99448 * 9 7 5 13 13 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 14 14 C 1.46903 * 110.99807 * 84.99961 * 13 2 1 15 15 H 1.08997 * 109.47215 * 324.99479 * 14 13 2 16 16 C 1.53001 * 109.47293 * 85.00045 * 14 13 2 17 17 C 1.50699 * 109.47050 * 204.99742 * 14 13 2 18 18 C 1.38261 * 119.96721 * 139.99770 * 17 14 13 19 19 C 1.38210 * 120.07445 * 180.02562 * 18 17 14 20 20 C 1.38416 * 119.99948 * 359.97438 * 19 18 17 21 21 F 1.35095 * 120.03559 * 180.02562 * 20 19 18 22 22 C 1.38648 * 119.92609 * 0.02562 * 20 19 18 23 23 F 1.35102 * 120.03168 * 179.97438 * 22 20 19 24 24 C 1.38214 * 119.96680 * 319.73148 * 17 14 13 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 29 29 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 30 30 H 0.97002 * 120.00100 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99898 * 208.95281 * 13 2 1 32 32 H 1.08998 * 109.46899 * 299.99701 * 16 14 13 33 33 H 1.09004 * 109.47059 * 59.99551 * 16 14 13 34 34 H 1.08995 * 109.47229 * 179.97438 * 16 14 13 35 35 H 1.07998 * 119.95873 * 359.97438 * 18 17 14 36 36 H 1.07995 * 120.00215 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.99924 * 359.97184 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2305 -1.1935 2.3577 8 7 3.5765 -1.8378 3.2994 9 14 6.0922 -1.0622 2.4361 10 1 6.4709 0.1600 3.1897 11 1 6.6443 -2.2578 3.1223 12 1 6.6413 -0.9845 1.0585 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2228 -2.3469 15 1 1.2576 0.9330 -2.2907 16 6 3.4111 0.9811 -2.3223 17 6 1.9787 -0.5674 -3.6259 18 6 1.2288 -0.0796 -4.6801 19 6 1.1317 -0.8026 -5.8539 20 6 1.7860 -2.0163 -5.9753 21 9 1.6920 -2.7234 -7.1226 22 6 2.5380 -2.5055 -4.9182 23 9 3.1771 -3.6901 -5.0341 24 6 2.6377 -1.7763 -3.7459 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 4.0608 -2.2446 4.0348 31 1 2.9174 -1.1204 -1.0288 32 1 3.4862 1.5526 -1.3972 33 1 4.2360 0.2708 -2.3785 34 1 3.4579 1.6598 -3.1739 35 1 0.7178 0.8672 -4.5858 36 1 0.5453 -0.4207 -6.6765 37 1 3.2271 -2.1541 -2.9235 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411438727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:02 Heat of formation + Delta-G solvation = -98.699718 kcal Electronic energy + Delta-G solvation = -20386.570700 eV Core-core repulsion = 16991.354990 eV Total energy + Delta-G solvation = -3395.215709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.47283 -49.55881 -40.44560 -38.25774 -35.26021 -33.78351 -31.76166 -30.50481 -29.33176 -28.79607 -25.25752 -24.70161 -23.94186 -21.77658 -21.02162 -18.94020 -18.47411 -18.10104 -17.90534 -17.31199 -16.71441 -16.35496 -16.05031 -15.99285 -15.47672 -15.10532 -14.91468 -14.69531 -14.36503 -13.81182 -13.73964 -13.55802 -13.37737 -13.28663 -12.93387 -12.67040 -12.59161 -12.45707 -12.36113 -12.17209 -11.99638 -11.77587 -11.23150 -10.95223 -10.55678 -9.98957 -9.60449 -9.13151 -8.17357 -6.26877 -0.05343 0.09790 1.39856 1.41066 1.50415 2.40933 2.42014 2.83963 3.14809 3.35548 3.39462 3.61947 3.79277 4.10672 4.20989 4.27828 4.43239 4.46271 4.63325 4.68856 4.80192 4.82729 4.90002 4.94190 5.03277 5.08882 5.14092 5.27424 5.30204 5.41198 5.43673 5.56461 5.63746 5.81271 5.88587 6.23594 6.46483 6.64344 6.89685 7.42042 8.94307 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.004815 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.198024 B = 5813.955325 C = 6432.917436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.099 3.901 3 H 0.036 0.964 4 C 0.025 3.975 5 C -0.528 4.528 6 H 0.063 0.937 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.682 5.682 14 C 0.121 3.879 15 H 0.106 0.894 16 C -0.173 4.173 17 C -0.042 4.042 18 C -0.085 4.085 19 C -0.112 4.112 20 C 0.042 3.958 21 F -0.142 7.142 22 C 0.043 3.957 23 F -0.147 7.147 24 C -0.116 4.116 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.068 0.932 28 H -0.006 1.006 29 H -0.007 1.007 30 H 0.261 0.739 31 H 0.343 0.657 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 6.497 -18.083 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.010 4.010 3 H 0.054 0.946 4 C -0.012 4.012 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.315 5.315 14 C 0.011 3.989 15 H 0.124 0.876 16 C -0.232 4.232 17 C -0.043 4.043 18 C -0.103 4.103 19 C -0.130 4.130 20 C 0.022 3.978 21 F -0.120 7.120 22 C 0.023 3.977 23 F -0.126 7.126 24 C -0.135 4.135 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.192 0.808 36 H 0.194 0.806 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.335 6.073 -18.128 19.849 hybrid contribution 2.047 -0.513 0.767 2.245 sum -3.289 5.560 -17.360 18.523 Atomic orbital electron populations 1.21742 0.94592 1.01235 1.01157 1.21397 0.94870 0.95257 0.89509 0.94591 1.19152 0.94847 0.94649 0.92563 1.21557 0.93227 1.33655 1.08145 0.91866 1.25856 1.02910 0.95024 0.95583 1.70098 1.37404 1.36929 1.12788 0.85604 0.80362 0.77406 0.78618 1.20107 1.21459 1.18633 1.60701 1.34130 1.32216 1.04424 1.20576 0.98490 0.92379 0.87448 0.87580 1.22440 0.97066 1.00947 1.02740 1.19896 0.95025 0.93425 0.95906 1.21309 0.97272 1.01152 0.90570 1.21351 0.99474 0.91497 1.00692 1.17939 1.03308 0.94289 0.82234 1.91480 1.95045 1.78322 1.47189 1.17954 0.99295 0.84241 0.96185 1.91472 1.80177 1.44416 1.96503 1.20927 1.01584 0.95640 0.95379 0.93768 0.93057 0.91316 0.98769 0.98842 0.93027 0.83652 0.92851 0.93422 0.89846 0.80783 0.80563 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.40 71.98 0.68 -3.45 16 2 C 0.10 3.71 2.40 44.92 0.11 3.82 16 3 H 0.04 1.33 7.11 -2.39 -0.02 1.31 16 4 C 0.03 1.26 4.57 29.85 0.14 1.40 16 5 C -0.53 -27.92 8.12 25.60 0.21 -27.71 16 6 H 0.06 3.15 7.49 -2.91 -0.02 3.13 16 7 C 0.00 0.24 5.46 84.65 0.46 0.70 16 8 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 9 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 N -0.68 -23.07 5.52 -473.30 -2.61 -25.68 16 14 C 0.12 3.02 2.60 44.17 0.11 3.13 16 15 H 0.11 2.26 6.97 -2.39 -0.02 2.24 16 16 C -0.17 -4.23 9.12 71.98 0.66 -3.57 16 17 C -0.04 -0.95 4.95 -19.86 -0.10 -1.05 16 18 C -0.08 -1.40 9.66 22.27 0.22 -1.18 16 19 C -0.11 -1.88 10.02 22.31 0.22 -1.66 16 20 C 0.04 1.02 7.31 22.41 0.16 1.18 16 21 F -0.14 -3.63 17.18 44.97 0.77 -2.86 16 22 C 0.04 1.21 7.31 22.41 0.16 1.37 16 23 F -0.15 -4.63 17.18 44.97 0.77 -3.86 16 24 C -0.12 -3.19 9.30 22.31 0.21 -2.98 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.75 7.43 -2.39 -0.02 1.73 16 28 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.34 13.19 6.30 -89.69 -0.56 12.62 16 32 H 0.05 1.46 7.43 -2.39 -0.02 1.44 16 33 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.17 1.62 8.03 -2.91 -0.02 1.60 16 36 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.13 3.97 7.25 -2.91 -0.02 3.94 16 Total: -1.00 -63.02 317.47 4.99 -58.02 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.51 Total: 14.58 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.24 Total: -30.00 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -2.33 Total: -81.07 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 1.55 Total: -6.72 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -63.02 4.99 -58.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411438727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.676 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds