Wall clock time and date at job start Mon Mar 30 2020 01:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46564 * 2 1 4 4 C 1.52992 * 109.47532 * 239.99589 * 2 1 3 5 5 C 1.50697 * 109.47218 * 175.00022 * 4 2 1 6 6 H 1.08000 * 120.00343 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99833 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99521 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00337 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47010 * 89.99720 * 9 7 5 11 11 H 1.48494 * 109.47391 * 210.00319 * 9 7 5 12 12 H 1.48505 * 109.47062 * 330.00455 * 9 7 5 13 13 N 1.46906 * 109.46984 * 119.99281 * 2 1 3 14 14 C 1.46901 * 111.00271 * 277.09658 * 13 2 1 15 15 H 1.09007 * 109.46742 * 32.64895 * 14 13 2 16 16 C 1.52994 * 109.47277 * 152.64766 * 14 13 2 17 17 C 1.50695 * 109.47433 * 272.64985 * 14 13 2 18 18 C 1.38259 * 119.96831 * 139.99743 * 17 14 13 19 19 C 1.38217 * 120.07047 * 180.02562 * 18 17 14 20 20 C 1.38413 * 119.99964 * 0.02562 * 19 18 17 21 21 F 1.35099 * 120.03407 * 180.02562 * 20 19 18 22 22 C 1.38649 * 119.92845 * 359.97438 * 20 19 18 23 23 F 1.35097 * 120.03211 * 180.02562 * 22 20 19 24 24 C 1.38218 * 119.96231 * 319.72704 * 17 14 13 25 25 H 1.08998 * 109.47216 * 64.92045 * 1 2 3 26 26 H 1.09005 * 109.46990 * 184.91720 * 1 2 3 27 27 H 1.09004 * 109.47548 * 304.92035 * 1 2 3 28 28 H 1.08995 * 109.47208 * 54.99821 * 4 2 1 29 29 H 1.09004 * 109.47204 * 294.99865 * 4 2 1 30 30 H 0.97005 * 119.99450 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99902 * 41.05274 * 13 2 1 32 32 H 1.08998 * 109.47210 * 55.04004 * 16 14 13 33 33 H 1.08998 * 109.47074 * 175.04559 * 16 14 13 34 34 H 1.09008 * 109.47001 * 295.04647 * 16 14 13 35 35 H 1.07993 * 119.96151 * 359.97438 * 18 17 14 36 36 H 1.07993 * 119.99494 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.99877 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3125 6 1 4.0790 -0.0854 -0.5394 7 6 4.2304 -1.1927 -2.3581 8 7 5.5411 -1.0994 -2.4136 9 14 3.3017 -2.1079 -3.6956 10 1 2.9400 -1.1628 -4.7824 11 1 4.1605 -3.1880 -4.2442 12 1 2.0661 -2.7005 -3.1234 13 7 2.0196 -0.6924 1.1996 14 6 2.0354 0.2099 2.3587 15 1 1.2151 0.9230 2.2752 16 6 1.8729 -0.6062 3.6426 17 6 3.3454 0.9537 2.3987 18 6 3.3695 2.2921 2.7446 19 6 4.5698 2.9764 2.7814 20 6 5.7493 2.3220 2.4713 21 9 6.9230 2.9901 2.5075 22 6 5.7252 0.9798 2.1244 23 9 6.8753 0.3388 1.8219 24 6 4.5223 0.2956 2.0949 25 1 -0.3633 0.4356 -0.9308 26 1 -0.3633 -1.0239 0.0881 27 1 -0.3634 0.5883 0.8426 28 1 1.6055 -0.2619 -2.1368 29 1 1.7518 -1.7716 -1.2054 30 1 6.0255 -1.5062 -3.1490 31 1 1.4704 -1.5170 1.3906 32 1 2.6420 -1.3776 3.6825 33 1 1.9726 0.0513 4.5061 34 1 0.8884 -1.0739 3.6537 35 1 2.4493 2.8035 2.9854 36 1 4.5871 4.0219 3.0513 37 1 4.5028 -0.7511 1.8296 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411438729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:05 Heat of formation + Delta-G solvation = -73.002049 kcal Electronic energy + Delta-G solvation = -20973.436245 eV Core-core repulsion = 17579.334871 eV Total energy + Delta-G solvation = -3394.101375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99746 -48.04165 -39.18814 -36.82324 -33.58302 -32.02136 -30.42807 -29.36614 -28.07104 -27.49486 -23.59890 -22.85329 -22.51933 -20.41930 -19.72965 -17.54052 -16.86962 -16.57068 -16.43769 -15.83618 -15.10390 -14.69135 -14.49962 -14.45626 -14.00949 -13.81683 -13.66258 -13.13181 -12.91487 -12.80825 -12.28462 -12.23246 -12.12409 -11.79804 -11.74850 -11.34908 -11.19298 -10.98884 -10.72704 -10.67944 -10.29174 -9.71142 -9.57874 -9.04110 -8.56696 -8.39350 -8.25106 -7.78092 -5.86554 -3.81293 1.27185 1.43211 3.37161 3.45451 3.47193 3.70986 4.21727 4.52798 4.57151 4.72450 4.87844 4.98601 5.28045 5.32631 5.38424 5.46808 5.58653 5.59648 5.70229 5.73610 5.85512 5.87823 6.11395 6.19357 6.23572 6.26245 6.30662 6.44521 6.48117 6.74834 6.81532 7.14928 7.17060 7.31703 7.74470 7.90423 8.03346 8.75155 9.24846 9.75837 11.26672 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.007589 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.401052 B = 3688.725648 C = 4980.680144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.098 3.902 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.492 4.492 6 H 0.081 0.919 7 C 0.062 3.938 8 N -0.904 5.904 9 Si 0.872 3.128 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.659 5.659 14 C 0.122 3.878 15 H 0.052 0.948 16 C -0.150 4.150 17 C -0.052 4.052 18 C -0.108 4.108 19 C -0.136 4.136 20 C 0.054 3.946 21 F -0.137 7.137 22 C 0.073 3.927 23 F -0.127 7.127 24 C -0.071 4.071 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.011 0.989 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.337 0.663 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 4.799 12.853 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.089 0.911 4 C -0.042 4.042 5 C -0.530 4.530 6 H 0.099 0.901 7 C -0.138 4.138 8 N -0.545 5.545 9 Si 0.700 3.300 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.290 5.290 14 C 0.012 3.988 15 H 0.070 0.930 16 C -0.208 4.208 17 C -0.054 4.054 18 C -0.126 4.126 19 C -0.154 4.154 20 C 0.034 3.966 21 F -0.116 7.116 22 C 0.053 3.947 23 F -0.105 7.105 24 C -0.090 4.090 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.019 4.832 12.580 15.195 hybrid contribution -0.839 -0.379 -0.899 1.287 sum -7.859 4.453 11.681 14.766 Atomic orbital electron populations 1.22603 0.99418 1.01031 1.01140 1.21593 0.89637 0.98424 0.91445 0.91119 1.19593 0.97982 0.95306 0.91274 1.21071 0.89403 1.33836 1.08711 0.90118 1.25019 0.94646 0.96335 0.97812 1.69927 1.06346 1.46002 1.32177 0.86919 0.80190 0.80031 0.82821 1.20804 1.21747 1.19369 1.60469 1.59245 1.07472 1.01780 1.20357 0.92509 0.94398 0.91529 0.93020 1.21977 1.02047 1.00445 0.96340 1.19763 0.95099 0.93078 0.97430 1.20836 0.97255 0.93851 1.00687 1.20835 0.90648 1.00629 1.03328 1.17719 0.82444 0.89553 1.06891 1.91479 1.45534 1.80106 1.94457 1.17791 0.83744 0.89523 1.03679 1.91541 1.46979 1.81332 1.90665 1.21075 0.88888 1.02716 0.96285 0.92416 0.93062 0.94002 0.97112 0.96652 0.93131 0.84403 0.91334 0.92088 0.92466 0.85191 0.84483 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.15 37.16 0.34 -2.29 16 2 C 0.10 1.77 2.35 -67.71 -0.16 1.61 16 3 H 0.07 1.37 7.74 -51.93 -0.40 0.97 16 4 C 0.00 -0.09 3.72 -27.89 -0.10 -0.19 16 5 C -0.49 -13.58 9.39 -34.44 -0.32 -13.90 16 6 H 0.08 2.40 7.09 -52.49 -0.37 2.02 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 9 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 13 N -0.66 -10.67 5.02 -100.96 -0.51 -11.18 16 14 C 0.12 1.62 2.62 -68.87 -0.18 1.44 16 15 H 0.05 0.64 6.86 -51.93 -0.36 0.28 16 16 C -0.15 -1.59 9.13 37.15 0.34 -1.25 16 17 C -0.05 -0.79 4.72 -104.62 -0.49 -1.29 16 18 C -0.11 -1.41 9.66 -39.58 -0.38 -1.79 16 19 C -0.14 -1.87 10.02 -39.52 -0.40 -2.27 16 20 C 0.05 0.92 7.31 -39.36 -0.29 0.64 16 21 F -0.14 -2.40 17.18 2.25 0.04 -2.37 16 22 C 0.07 1.39 7.31 -39.37 -0.29 1.10 16 23 F -0.13 -2.70 17.18 2.25 0.04 -2.66 16 24 C -0.07 -1.28 8.42 -39.53 -0.33 -1.61 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 27 H 0.04 0.52 7.38 -51.93 -0.38 0.13 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 29 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.34 4.91 8.05 -39.29 -0.32 4.60 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.13 1.30 8.03 -52.49 -0.42 0.88 16 36 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.16 3.11 7.72 -52.48 -0.41 2.70 16 LS Contribution 315.48 15.07 4.75 4.75 Total: -1.00 -31.30 315.48 -7.06 -38.36 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.12 Total: 1.46 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.37 Total: -18.10 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.27 Total: -38.68 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.08 Total: -5.03 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.30 -7.06 -38.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411438729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.647 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds