Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46564 * 2 1 4 4 C 1.52992 * 109.47532 * 239.99589 * 2 1 3 5 5 C 1.50697 * 109.47218 * 175.00022 * 4 2 1 6 6 H 1.08000 * 120.00343 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99833 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99521 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00337 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47010 * 89.99720 * 9 7 5 11 11 H 1.48494 * 109.47391 * 210.00319 * 9 7 5 12 12 H 1.48505 * 109.47062 * 330.00455 * 9 7 5 13 13 N 1.46906 * 109.46984 * 119.99281 * 2 1 3 14 14 C 1.46901 * 111.00271 * 277.09658 * 13 2 1 15 15 H 1.09007 * 109.46742 * 32.64895 * 14 13 2 16 16 C 1.52994 * 109.47277 * 152.64766 * 14 13 2 17 17 C 1.50695 * 109.47433 * 272.64985 * 14 13 2 18 18 C 1.38259 * 119.96831 * 139.99743 * 17 14 13 19 19 C 1.38217 * 120.07047 * 180.02562 * 18 17 14 20 20 C 1.38413 * 119.99964 * 0.02562 * 19 18 17 21 21 F 1.35099 * 120.03407 * 180.02562 * 20 19 18 22 22 C 1.38649 * 119.92845 * 359.97438 * 20 19 18 23 23 F 1.35097 * 120.03211 * 180.02562 * 22 20 19 24 24 C 1.38218 * 119.96231 * 319.72704 * 17 14 13 25 25 H 1.08998 * 109.47216 * 64.92045 * 1 2 3 26 26 H 1.09005 * 109.46990 * 184.91720 * 1 2 3 27 27 H 1.09004 * 109.47548 * 304.92035 * 1 2 3 28 28 H 1.08995 * 109.47208 * 54.99821 * 4 2 1 29 29 H 1.09004 * 109.47204 * 294.99865 * 4 2 1 30 30 H 0.97005 * 119.99450 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99902 * 41.05274 * 13 2 1 32 32 H 1.08998 * 109.47210 * 55.04004 * 16 14 13 33 33 H 1.08998 * 109.47074 * 175.04559 * 16 14 13 34 34 H 1.09008 * 109.47001 * 295.04647 * 16 14 13 35 35 H 1.07993 * 119.96151 * 359.97438 * 18 17 14 36 36 H 1.07993 * 119.99494 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.99877 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3125 6 1 4.0790 -0.0854 -0.5394 7 6 4.2304 -1.1927 -2.3581 8 7 5.5411 -1.0994 -2.4136 9 14 3.3017 -2.1079 -3.6956 10 1 2.9400 -1.1628 -4.7824 11 1 4.1605 -3.1880 -4.2442 12 1 2.0661 -2.7005 -3.1234 13 7 2.0196 -0.6924 1.1996 14 6 2.0354 0.2099 2.3587 15 1 1.2151 0.9230 2.2752 16 6 1.8729 -0.6062 3.6426 17 6 3.3454 0.9537 2.3987 18 6 3.3695 2.2921 2.7446 19 6 4.5698 2.9764 2.7814 20 6 5.7493 2.3220 2.4713 21 9 6.9230 2.9901 2.5075 22 6 5.7252 0.9798 2.1244 23 9 6.8753 0.3388 1.8219 24 6 4.5223 0.2956 2.0949 25 1 -0.3633 0.4356 -0.9308 26 1 -0.3633 -1.0239 0.0881 27 1 -0.3634 0.5883 0.8426 28 1 1.6055 -0.2619 -2.1368 29 1 1.7518 -1.7716 -1.2054 30 1 6.0255 -1.5062 -3.1490 31 1 1.4704 -1.5170 1.3906 32 1 2.6420 -1.3776 3.6825 33 1 1.9726 0.0513 4.5061 34 1 0.8884 -1.0739 3.6537 35 1 2.4493 2.8035 2.9854 36 1 4.5871 4.0219 3.0513 37 1 4.5028 -0.7511 1.8296 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411438729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = -92.516371 kcal Electronic energy + Delta-G solvation = -20974.282450 eV Core-core repulsion = 17579.334871 eV Total energy + Delta-G solvation = -3394.947579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.43350 -49.52326 -40.39923 -38.14000 -35.17721 -33.85443 -31.69229 -30.76759 -29.63051 -28.64729 -24.82044 -24.57319 -23.86768 -21.62297 -21.26906 -18.89762 -18.70586 -18.13797 -17.82814 -17.26995 -16.49158 -16.30365 -15.96565 -15.64249 -15.46329 -15.41962 -14.90275 -14.67264 -14.38685 -14.01999 -13.77837 -13.50507 -13.49213 -13.31890 -13.02339 -12.64246 -12.46381 -12.36146 -12.17127 -11.94257 -11.87471 -11.56379 -11.32337 -11.04689 -10.63246 -9.88323 -9.52974 -8.98643 -8.10859 -6.09288 -0.00794 0.18851 1.36945 1.39204 1.49506 2.44915 2.47576 2.93861 3.21609 3.39366 3.44671 3.69546 3.82052 4.18954 4.24627 4.28388 4.41263 4.49976 4.54985 4.63876 4.79189 4.93290 4.94996 5.03222 5.08844 5.09200 5.18484 5.23582 5.28989 5.35540 5.38894 5.52836 5.65773 5.82513 5.89001 6.42283 6.58978 6.83775 7.02451 7.51490 9.05666 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.007589 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.401052 B = 3688.725648 C = 4980.680144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H 0.054 0.946 4 C -0.005 4.005 5 C -0.483 4.483 6 H 0.046 0.954 7 C -0.008 4.008 8 N -0.960 5.960 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.246 1.246 13 N -0.683 5.683 14 C 0.126 3.874 15 H 0.079 0.921 16 C -0.144 4.144 17 C -0.054 4.054 18 C -0.090 4.090 19 C -0.120 4.120 20 C 0.036 3.964 21 F -0.145 7.145 22 C 0.028 3.972 23 F -0.155 7.155 24 C -0.088 4.088 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.013 0.987 29 H 0.016 0.984 30 H 0.256 0.744 31 H 0.347 0.653 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.081 5.968 13.943 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.004 4.004 3 H 0.072 0.928 4 C -0.043 4.043 5 C -0.521 4.521 6 H 0.064 0.936 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.223 1.223 12 H -0.169 1.169 13 N -0.315 5.315 14 C 0.016 3.984 15 H 0.097 0.903 16 C -0.201 4.201 17 C -0.055 4.055 18 C -0.109 4.109 19 C -0.138 4.138 20 C 0.016 3.984 21 F -0.124 7.124 22 C 0.009 3.991 23 F -0.134 7.134 24 C -0.108 4.108 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.167 0.833 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.197 0.803 36 H 0.194 0.806 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.212 6.000 13.690 18.684 hybrid contribution 0.460 -0.686 -1.153 1.418 sum -10.752 5.314 12.537 17.350 Atomic orbital electron populations 1.22447 0.95789 1.02307 1.02458 1.21309 0.92334 0.96648 0.90088 0.92760 1.19595 0.94429 0.96057 0.94244 1.21448 0.92180 1.31612 1.06907 0.93586 1.25958 0.95369 0.97993 1.00912 1.70128 1.08517 1.48314 1.33393 0.85803 0.79345 0.78547 0.79658 1.20049 1.22316 1.16932 1.60249 1.60142 1.08620 1.02531 1.20485 0.91853 0.94650 0.91424 0.90343 1.21939 1.02683 1.00075 0.95433 1.20172 0.94770 0.94272 0.96334 1.21363 0.98748 0.92701 0.98043 1.21328 0.89281 1.02222 1.00980 1.18030 0.83495 0.88891 1.07962 1.91449 1.46311 1.79985 1.94642 1.18287 0.83399 0.91030 1.06425 1.91449 1.48482 1.82081 1.91360 1.20926 0.90069 1.01626 0.98146 0.92411 0.92103 0.91105 0.96882 0.96560 0.93534 0.83296 0.93067 0.90211 0.90298 0.80336 0.80582 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 9.15 71.98 0.66 -3.52 16 2 C 0.11 3.59 2.35 44.91 0.11 3.69 16 3 H 0.05 2.00 7.74 -2.39 -0.02 1.98 16 4 C -0.01 -0.24 3.72 29.84 0.11 -0.13 16 5 C -0.48 -27.35 9.39 25.60 0.24 -27.11 16 6 H 0.05 2.88 7.09 -2.91 -0.02 2.86 16 7 C -0.01 -0.49 5.47 84.66 0.46 -0.03 16 8 N -0.96 -63.02 13.96 21.45 0.30 -62.72 16 9 Si 0.94 45.73 27.47 68.60 1.88 47.62 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 12 H -0.25 -10.91 6.54 99.48 0.65 -10.25 16 13 N -0.68 -21.03 5.02 -473.32 -2.38 -23.41 16 14 C 0.13 2.95 2.62 44.17 0.12 3.07 16 15 H 0.08 1.49 6.86 -2.38 -0.02 1.47 16 16 C -0.14 -2.58 9.13 71.98 0.66 -1.93 16 17 C -0.05 -1.56 4.72 -19.87 -0.09 -1.65 16 18 C -0.09 -2.03 9.66 22.27 0.22 -1.82 16 19 C -0.12 -2.99 10.02 22.31 0.22 -2.77 16 20 C 0.04 1.26 7.31 22.41 0.16 1.42 16 21 F -0.15 -5.23 17.18 44.97 0.77 -4.46 16 22 C 0.03 1.17 7.31 22.41 0.16 1.33 16 23 F -0.15 -7.32 17.18 44.97 0.77 -6.55 16 24 C -0.09 -3.37 8.42 22.31 0.19 -3.18 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.38 8.05 -2.38 -0.02 1.37 16 27 H 0.07 1.35 7.38 -2.39 -0.02 1.33 16 28 H 0.01 0.57 7.57 -2.39 -0.02 0.56 16 29 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 30 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 31 H 0.35 9.33 8.05 -89.69 -0.72 8.61 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.18 2.36 8.03 -2.91 -0.02 2.34 16 36 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.13 5.51 7.72 -2.91 -0.02 5.48 16 Total: -1.00 -73.75 315.48 4.86 -68.89 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.30 Total: 13.25 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 3.21 Total: -32.62 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.08 Total: -86.13 kcal Atomic # 9 Polarization: -12.56 SS G_CDS: 1.55 Total: -11.01 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.62 kcal Total: -73.75 4.86 -68.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411438729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.626 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds