Wall clock time and date at job start Mon Mar 30 2020 01:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47049 * 239.99881 * 2 1 3 5 5 C 1.50706 * 109.47238 * 174.99770 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 N 1.46896 * 109.47092 * 120.00193 * 2 1 3 14 14 C 1.46907 * 110.99769 * 274.99650 * 13 2 1 15 15 H 1.08996 * 109.47266 * 35.00517 * 14 13 2 16 16 C 1.53003 * 109.47464 * 274.99981 * 14 13 2 17 17 C 1.50703 * 109.46963 * 155.00046 * 14 13 2 18 18 C 1.38423 * 120.02169 * 44.72918 * 17 14 13 19 19 F 1.35090 * 120.01704 * 359.97391 * 18 17 14 20 20 C 1.38477 * 119.96729 * 179.69882 * 18 17 14 21 21 C 1.38205 * 120.02964 * 0.59799 * 20 18 17 22 22 C 1.38212 * 120.05112 * 359.67731 * 21 20 18 23 23 C 1.38416 * 120.02752 * 224.99976 * 17 14 13 24 24 F 1.35108 * 120.01022 * 359.97438 * 23 17 14 25 25 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46959 * 299.99967 * 1 2 3 27 27 H 1.08998 * 109.47252 * 59.99923 * 1 2 3 28 28 H 1.09001 * 109.46832 * 55.00084 * 4 2 1 29 29 H 1.09000 * 109.47611 * 295.00381 * 4 2 1 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00401 * 38.95232 * 13 2 1 32 32 H 1.08997 * 109.46805 * 59.99733 * 16 14 13 33 33 H 1.09000 * 109.47188 * 180.02562 * 16 14 13 34 34 H 1.09000 * 109.47128 * 300.00035 * 16 14 13 35 35 H 1.07999 * 119.98590 * 180.27354 * 20 18 17 36 36 H 1.07998 * 119.97762 * 179.70052 * 21 20 18 37 37 H 1.07994 * 119.98992 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2303 -1.1926 -2.3583 8 7 3.5762 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4367 10 1 6.7000 -2.2146 -1.7255 11 1 6.5295 -1.0684 -3.8558 12 1 6.5268 0.2033 -1.7911 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2577 0.9329 2.2907 16 6 3.4112 0.9809 2.3224 17 6 1.9786 -0.5676 3.6259 18 6 2.7109 -1.7318 3.7820 19 9 3.5187 -2.1606 2.7878 20 6 2.6194 -2.4538 4.9602 21 6 1.7880 -2.0190 5.9750 22 6 1.0520 -0.8597 5.8179 23 6 1.1467 -0.1328 4.6431 24 9 0.4276 1.0007 4.4900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -0.2617 -2.1369 29 1 1.7516 -1.7715 -1.2056 30 1 4.0607 -2.2429 -4.0360 31 1 1.4496 -1.4980 1.4100 32 1 3.4863 1.5524 1.3973 33 1 3.4580 1.6596 3.1740 34 1 4.2360 0.2706 2.3786 35 1 3.1940 -3.3598 5.0841 36 1 1.7136 -2.5853 6.8916 37 1 0.4030 -0.5206 6.6117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411451202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:07 Heat of formation + Delta-G solvation = -72.562006 kcal Electronic energy + Delta-G solvation = -21023.590206 eV Core-core repulsion = 17629.507913 eV Total energy + Delta-G solvation = -3394.082293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.06410 -48.59971 -39.09653 -37.02964 -33.64693 -32.05519 -30.33564 -29.56761 -27.91090 -27.12421 -23.86758 -22.95527 -22.78104 -20.54919 -19.61096 -18.04837 -17.20374 -16.40181 -15.97694 -15.90247 -15.48493 -15.08611 -14.81513 -14.51332 -14.28906 -14.14875 -13.59807 -12.86819 -12.69381 -12.62331 -12.31997 -11.98219 -11.89742 -11.79450 -11.65351 -11.55744 -11.31257 -10.90991 -10.63234 -10.54331 -10.33252 -9.95139 -9.26151 -8.94722 -8.86142 -8.75478 -8.18360 -7.56989 -5.80937 -3.77599 0.88603 0.94330 3.28878 3.44546 3.49919 3.53678 3.89897 4.41049 4.42270 4.53783 4.62971 4.74127 4.95484 5.05489 5.47003 5.56087 5.63782 5.72596 5.81476 5.83282 5.89437 5.94848 5.95887 6.01490 6.04816 6.15385 6.31792 6.52250 6.65730 6.66148 6.76068 7.08007 7.58880 7.73585 8.05143 8.09751 8.21874 8.67452 9.27484 9.83233 11.31423 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.005705 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.118718 B = 4906.547656 C = 5479.818043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.089 3.911 3 H 0.066 0.934 4 C 0.035 3.965 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.649 5.649 14 C 0.125 3.875 15 H 0.052 0.948 16 C -0.133 4.133 17 C -0.159 4.159 18 C 0.156 3.844 19 F -0.101 7.101 20 C -0.174 4.174 21 C -0.067 4.067 22 C -0.173 4.173 23 C 0.130 3.870 24 F -0.132 7.132 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.256 0.744 31 H 0.331 0.669 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 1.402 19.132 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.020 4.020 3 H 0.085 0.915 4 C -0.003 4.003 5 C -0.521 4.521 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.280 5.280 14 C 0.015 3.985 15 H 0.070 0.930 16 C -0.191 4.191 17 C -0.162 4.162 18 C 0.136 3.864 19 F -0.079 7.079 20 C -0.193 4.193 21 C -0.085 4.085 22 C -0.192 4.192 23 C 0.110 3.890 24 F -0.110 7.110 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.696 1.433 18.738 19.371 hybrid contribution 0.037 0.164 -0.065 0.180 sum -4.659 1.597 18.673 19.312 Atomic orbital electron populations 1.22568 0.99579 1.01183 1.00632 1.21865 0.89795 0.98292 0.92085 0.91547 1.19095 0.96323 0.95341 0.89502 1.21148 0.91808 1.32605 1.06570 0.92239 1.24991 0.97836 0.96048 0.96100 1.69971 1.35050 1.37261 1.12424 0.86653 0.86713 0.78291 0.76628 1.20941 1.21723 1.20132 1.60760 1.57746 1.07806 1.01657 1.20359 0.98589 0.93386 0.86167 0.93034 1.21774 0.96545 0.99541 1.01260 1.20260 0.99826 0.97741 0.98348 1.17269 0.90600 0.92568 0.85971 1.91695 1.69123 1.88433 1.58665 1.21288 1.02801 1.02105 0.93057 1.20783 0.94191 0.94946 0.98567 1.21102 1.03784 0.97159 0.97199 1.17256 0.92917 0.84284 0.94546 1.91506 1.75634 1.48021 1.95888 0.93076 0.94486 0.92362 0.96472 0.96542 0.93456 0.85144 0.91333 0.93614 0.91584 0.84128 0.84295 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 9.15 37.16 0.34 -2.81 16 2 C 0.09 1.83 2.34 -67.72 -0.16 1.67 16 3 H 0.07 1.39 7.11 -51.93 -0.37 1.02 16 4 C 0.03 0.90 4.65 -27.88 -0.13 0.77 16 5 C -0.48 -13.75 8.84 -34.44 -0.30 -14.05 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.89 13.29 55.43 0.74 -27.15 16 9 Si 0.89 22.58 29.54 -169.99 -5.02 17.56 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.65 -12.47 4.48 -100.95 -0.45 -12.92 16 14 C 0.12 2.06 2.42 -68.86 -0.17 1.89 16 15 H 0.05 0.85 6.24 -51.93 -0.32 0.52 16 16 C -0.13 -2.21 9.34 37.16 0.35 -1.86 16 17 C -0.16 -2.31 4.68 -104.49 -0.49 -2.79 16 18 C 0.16 2.22 6.79 -39.43 -0.27 1.96 16 19 F -0.10 -1.77 15.28 2.25 0.03 -1.74 16 20 C -0.17 -1.88 10.02 -39.51 -0.40 -2.27 16 21 C -0.07 -0.59 10.04 -39.60 -0.40 -0.98 16 22 C -0.17 -1.71 10.03 -39.50 -0.40 -2.10 16 23 C 0.13 1.65 7.25 -39.43 -0.29 1.36 16 24 F -0.13 -1.77 16.27 2.25 0.04 -1.73 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.04 0.58 7.43 -51.93 -0.39 0.19 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.33 6.17 7.79 -39.29 -0.31 5.86 16 32 H 0.07 1.21 7.43 -51.93 -0.39 0.82 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 35 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -31.15 315.77 -7.40 -38.55 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.09 Total: 0.56 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -2.40 Total: -17.90 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.28 Total: -40.07 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.47 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.15 -7.40 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411451202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.008 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds