Wall clock time and date at job start Mon Mar 30 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47049 * 239.99881 * 2 1 3 5 5 C 1.50706 * 109.47238 * 174.99770 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47293 * 89.99746 * 9 7 5 11 11 H 1.48504 * 109.47104 * 209.99992 * 9 7 5 12 12 H 1.48495 * 109.47249 * 329.99739 * 9 7 5 13 13 N 1.46896 * 109.47092 * 120.00193 * 2 1 3 14 14 C 1.46907 * 110.99769 * 274.99650 * 13 2 1 15 15 H 1.08996 * 109.47266 * 35.00517 * 14 13 2 16 16 C 1.53003 * 109.47464 * 274.99981 * 14 13 2 17 17 C 1.50703 * 109.46963 * 155.00046 * 14 13 2 18 18 C 1.38423 * 120.02169 * 44.72918 * 17 14 13 19 19 F 1.35090 * 120.01704 * 359.97391 * 18 17 14 20 20 C 1.38477 * 119.96729 * 179.69882 * 18 17 14 21 21 C 1.38205 * 120.02964 * 0.59799 * 20 18 17 22 22 C 1.38212 * 120.05112 * 359.67731 * 21 20 18 23 23 C 1.38416 * 120.02752 * 224.99976 * 17 14 13 24 24 F 1.35108 * 120.01022 * 359.97438 * 23 17 14 25 25 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46959 * 299.99967 * 1 2 3 27 27 H 1.08998 * 109.47252 * 59.99923 * 1 2 3 28 28 H 1.09001 * 109.46832 * 55.00084 * 4 2 1 29 29 H 1.09000 * 109.47611 * 295.00381 * 4 2 1 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00401 * 38.95232 * 13 2 1 32 32 H 1.08997 * 109.46805 * 59.99733 * 16 14 13 33 33 H 1.09000 * 109.47188 * 180.02562 * 16 14 13 34 34 H 1.09000 * 109.47128 * 300.00035 * 16 14 13 35 35 H 1.07999 * 119.98590 * 180.27354 * 20 18 17 36 36 H 1.07998 * 119.97762 * 179.70052 * 21 20 18 37 37 H 1.07994 * 119.98992 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2303 -1.1926 -2.3583 8 7 3.5762 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4367 10 1 6.7000 -2.2146 -1.7255 11 1 6.5295 -1.0684 -3.8558 12 1 6.5268 0.2033 -1.7911 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2577 0.9329 2.2907 16 6 3.4112 0.9809 2.3224 17 6 1.9786 -0.5676 3.6259 18 6 2.7109 -1.7318 3.7820 19 9 3.5187 -2.1606 2.7878 20 6 2.6194 -2.4538 4.9602 21 6 1.7880 -2.0190 5.9750 22 6 1.0520 -0.8597 5.8179 23 6 1.1467 -0.1328 4.6431 24 9 0.4276 1.0007 4.4900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -0.2617 -2.1369 29 1 1.7516 -1.7715 -1.2056 30 1 4.0607 -2.2429 -4.0360 31 1 1.4496 -1.4980 1.4100 32 1 3.4863 1.5524 1.3973 33 1 3.4580 1.6596 3.1740 34 1 4.2360 0.2706 2.3786 35 1 3.1940 -3.3598 5.0841 36 1 1.7136 -2.5853 6.8916 37 1 0.4030 -0.5206 6.6117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411451202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:06 Heat of formation + Delta-G solvation = -90.642152 kcal Electronic energy + Delta-G solvation = -21024.374220 eV Core-core repulsion = 17629.507913 eV Total energy + Delta-G solvation = -3394.866307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.02593 -49.75513 -40.10247 -38.43954 -35.34838 -33.93942 -31.20994 -30.73467 -29.62957 -28.83311 -25.28540 -24.59636 -23.77652 -21.79827 -21.26263 -19.02335 -18.40884 -18.23982 -17.27381 -16.96549 -16.50453 -16.44311 -16.19500 -16.12219 -15.58191 -15.28180 -15.01887 -14.52850 -14.17741 -13.67984 -13.63593 -13.58144 -13.23250 -13.18268 -13.03302 -12.84678 -12.75382 -12.62317 -12.40992 -12.24864 -12.03140 -11.63471 -11.17313 -11.09815 -10.47322 -9.85734 -9.67589 -9.08445 -8.08205 -6.11793 0.00189 0.05040 1.39985 1.42130 1.51952 2.42763 2.47969 2.97500 3.17136 3.29100 3.46477 3.52439 3.88098 3.93434 4.18021 4.26156 4.29020 4.38490 4.44281 4.52823 4.72730 4.80107 4.90041 4.93630 5.02269 5.08279 5.13109 5.18361 5.21609 5.24572 5.34643 5.51352 5.67652 5.84765 5.91256 6.30907 6.45561 6.62786 7.01281 7.53126 9.04282 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.005705 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.118718 B = 4906.547656 C = 5479.818043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.061 0.939 4 C 0.041 3.959 5 C -0.491 4.491 6 H 0.056 0.944 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.663 5.663 14 C 0.129 3.871 15 H 0.053 0.947 16 C -0.128 4.128 17 C -0.177 4.177 18 C 0.124 3.876 19 F -0.132 7.132 20 C -0.167 4.167 21 C -0.048 4.048 22 C -0.159 4.159 23 C 0.116 3.884 24 F -0.139 7.139 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.060 0.940 28 H -0.007 1.007 29 H -0.011 1.011 30 H 0.258 0.742 31 H 0.332 0.668 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.160 0.840 36 H 0.185 0.815 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 1.367 22.219 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 H 0.079 0.921 4 C 0.004 3.996 5 C -0.530 4.530 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.294 5.294 14 C 0.020 3.980 15 H 0.071 0.929 16 C -0.186 4.186 17 C -0.180 4.180 18 C 0.104 3.896 19 F -0.110 7.110 20 C -0.186 4.186 21 C -0.066 4.066 22 C -0.177 4.177 23 C 0.097 3.903 24 F -0.118 7.118 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.012 0.988 29 H 0.007 0.993 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.177 0.823 36 H 0.202 0.798 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.898 1.410 21.842 22.429 hybrid contribution 0.061 0.152 -0.921 0.935 sum -4.837 1.563 20.921 21.530 Atomic orbital electron populations 1.22413 0.96905 1.01663 1.01825 1.21522 0.91883 0.97006 0.90668 0.92110 1.18956 0.95269 0.94008 0.91408 1.21458 0.93233 1.32048 1.06255 0.92547 1.25832 1.02711 0.95835 0.95849 1.70100 1.36925 1.38295 1.13108 0.85609 0.80938 0.78560 0.76862 1.20562 1.21040 1.19153 1.60568 1.57992 1.08502 1.02336 1.20255 0.98223 0.93145 0.86417 0.92889 1.21721 0.96281 0.99329 1.01303 1.20075 1.01642 0.98250 0.97986 1.17647 0.91479 0.93655 0.86789 1.91613 1.70274 1.88874 1.60242 1.21601 1.02826 1.02151 0.91994 1.21306 0.91866 0.94260 0.99155 1.21527 1.03232 0.96509 0.96453 1.17464 0.92997 0.84624 0.95264 1.91487 1.75783 1.48517 1.96017 0.92962 0.92216 0.92135 0.98845 0.99308 0.93369 0.85025 0.93145 0.91248 0.93342 0.82272 0.79817 0.81244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.88 9.15 71.98 0.66 -5.22 16 2 C 0.10 4.18 2.34 44.92 0.11 4.28 16 3 H 0.06 2.62 7.11 -2.39 -0.02 2.60 16 4 C 0.04 2.22 4.65 29.85 0.14 2.36 16 5 C -0.49 -28.88 8.84 25.60 0.23 -28.66 16 6 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 8 N -0.94 -59.52 13.29 21.45 0.28 -59.24 16 9 Si 0.95 47.16 29.54 68.60 2.03 49.18 16 10 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.66 -26.17 4.48 -473.30 -2.12 -28.28 16 14 C 0.13 4.27 2.42 44.17 0.11 4.38 16 15 H 0.05 1.72 6.24 -2.39 -0.01 1.71 16 16 C -0.13 -4.33 9.34 71.98 0.67 -3.65 16 17 C -0.18 -4.99 4.68 -19.78 -0.09 -5.08 16 18 C 0.12 3.46 6.79 22.37 0.15 3.61 16 19 F -0.13 -4.74 15.28 44.97 0.69 -4.05 16 20 C -0.17 -3.15 10.02 22.32 0.22 -2.93 16 21 C -0.05 -0.62 10.04 22.26 0.22 -0.40 16 22 C -0.16 -2.45 10.03 22.32 0.22 -2.22 16 23 C 0.12 2.69 7.25 22.37 0.16 2.86 16 24 F -0.14 -3.47 16.27 44.97 0.73 -2.74 16 25 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 26 H 0.06 1.81 7.43 -2.39 -0.02 1.79 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.33 12.74 7.79 -89.69 -0.70 12.05 16 32 H 0.05 1.83 7.43 -2.39 -0.02 1.81 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.77 7.68 -2.39 -0.02 1.75 16 35 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 37 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -69.95 315.77 5.25 -64.70 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.38 Total: 11.05 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 3.26 Total: -30.62 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.83 Total: -87.52 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.42 Total: -6.79 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -69.95 5.25 -64.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411451202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.938 kcal (2) G-P(sol) polarization free energy of solvation -69.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds