Wall clock time and date at job start Mon Mar 30 2020 01:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47395 * 2 1 4 4 N 1.46901 * 109.46805 * 120.00487 * 2 1 3 5 5 C 1.46903 * 110.99375 * 207.15700 * 4 2 1 6 6 H 1.09000 * 109.47570 * 323.90359 * 5 4 2 7 7 C 1.52999 * 109.47354 * 83.90668 * 5 4 2 8 8 C 1.53006 * 109.47030 * 203.90402 * 5 4 2 9 9 C 1.50702 * 109.46998 * 64.99951 * 8 5 4 10 10 H 1.08001 * 120.00008 * 359.97438 * 9 8 5 11 11 C 1.37874 * 119.99817 * 180.02562 * 9 8 5 12 12 N 1.31517 * 120.00241 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 120.00035 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46809 * 90.00341 * 13 11 9 15 15 H 1.48499 * 109.47054 * 210.00460 * 13 11 9 16 16 H 1.48496 * 109.47210 * 330.00208 * 13 11 9 17 17 C 1.50703 * 109.46842 * 239.99999 * 2 1 3 18 18 C 1.38422 * 120.02858 * 285.25675 * 17 2 1 19 19 F 1.35099 * 120.01220 * 359.97438 * 18 17 2 20 20 C 1.38470 * 119.97706 * 180.24973 * 18 17 2 21 21 C 1.38214 * 120.02027 * 359.47197 * 20 18 17 22 22 C 1.38204 * 120.05341 * 0.29812 * 21 20 18 23 23 C 1.38420 * 120.02132 * 104.99915 * 17 2 1 24 24 F 1.35097 * 120.01798 * 0.02649 * 23 17 2 25 25 H 1.09008 * 109.47164 * 295.63524 * 1 2 3 26 26 H 1.08996 * 109.47165 * 55.63178 * 1 2 3 27 27 H 1.08999 * 109.47673 * 175.63398 * 1 2 3 28 28 H 1.00900 * 111.00066 * 331.10969 * 4 2 1 29 29 H 1.09001 * 109.46625 * 295.19384 * 7 5 4 30 30 H 1.09004 * 109.46828 * 55.18785 * 7 5 4 31 31 H 1.08991 * 109.47335 * 175.19317 * 7 5 4 32 32 H 1.08989 * 109.47175 * 185.00360 * 8 5 4 33 33 H 1.09004 * 109.47198 * 305.00178 * 8 5 4 34 34 H 0.96994 * 120.00494 * 179.97438 * 12 11 9 35 35 H 1.07994 * 119.99127 * 179.74189 * 20 18 17 36 36 H 1.07998 * 119.96972 * 180.26862 * 21 20 18 37 37 H 1.07996 * 119.99125 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3455 -0.1953 1.5900 6 1 3.9253 0.0345 0.6960 7 6 3.1871 1.0707 2.4344 8 6 4.0714 -1.2659 2.4073 9 6 4.3366 -2.4678 1.5377 10 1 4.0189 -2.4682 0.5055 11 6 4.9840 -3.5673 2.0601 12 7 5.2159 -4.6160 1.3011 13 14 5.5330 -3.5668 3.8457 14 1 4.4460 -4.1123 4.6978 15 1 6.7464 -4.4105 3.9907 16 1 5.8430 -2.1773 4.2679 17 6 2.0323 -0.7104 -1.2305 18 6 1.9658 -2.0908 -1.3090 19 9 1.4510 -2.8021 -0.2822 20 6 2.4324 -2.7428 -2.4380 21 6 2.9543 -2.0151 -3.4908 22 6 3.0168 -0.6365 -3.4155 23 6 2.5555 0.0173 -2.2853 24 9 2.6168 1.3649 -2.2120 25 1 -0.3634 0.4446 0.9266 26 1 -0.3633 0.5801 -0.8482 27 1 -0.3634 -1.0246 -0.0782 28 1 1.3625 -0.6064 1.9603 29 1 2.7473 1.8607 1.8257 30 1 2.5366 0.8617 3.2838 31 1 4.1642 1.3914 2.7953 32 1 5.0172 -0.8654 2.7720 33 1 3.4507 -1.5598 3.2538 34 1 5.6717 -5.3894 1.6686 35 1 2.3845 -3.8201 -2.4978 36 1 3.3139 -2.5242 -4.3727 37 1 3.4251 -0.0689 -4.2385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411451204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:11 Heat of formation + Delta-G solvation = -68.117099 kcal Electronic energy + Delta-G solvation = -21536.350990 eV Core-core repulsion = 18142.461442 eV Total energy + Delta-G solvation = -3393.889547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.74605 -48.04814 -38.72908 -36.97305 -33.68239 -32.01457 -29.88720 -29.65649 -28.05066 -27.42215 -23.62876 -22.68137 -22.39344 -20.41026 -19.66165 -17.66878 -16.91975 -16.51442 -15.79763 -15.50806 -15.06407 -14.77191 -14.58107 -14.51804 -14.08625 -13.87372 -13.71516 -12.82346 -12.76539 -12.34157 -12.22861 -12.13102 -12.07021 -11.64912 -11.64185 -11.50923 -11.13519 -11.03023 -10.75035 -10.68398 -10.09501 -9.74328 -9.52726 -8.97323 -8.49222 -8.35044 -8.24432 -7.65188 -5.83944 -3.76357 1.34549 1.44693 3.40368 3.47343 3.50025 3.74105 4.33422 4.57381 4.60603 4.84366 4.89919 5.11642 5.24082 5.38909 5.48266 5.50860 5.51099 5.66035 5.76651 5.80972 5.94688 5.96070 6.13711 6.24142 6.26341 6.35996 6.41904 6.50174 6.51891 6.53550 6.85524 7.19805 7.22935 7.34739 7.81277 7.95754 8.11438 8.79757 9.27945 9.79771 11.30164 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.007749 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.080765 B = 3612.386716 C = 4313.070577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.125 3.875 3 H 0.054 0.946 4 N -0.653 5.653 5 C 0.099 3.901 6 H 0.067 0.933 7 C -0.182 4.182 8 C -0.003 4.003 9 C -0.482 4.482 10 H 0.078 0.922 11 C 0.061 3.939 12 N -0.909 5.909 13 Si 0.872 3.128 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.270 1.270 17 C -0.147 4.147 18 C 0.187 3.813 19 F -0.101 7.101 20 C -0.169 4.169 21 C -0.066 4.066 22 C -0.179 4.179 23 C 0.121 3.879 24 F -0.139 7.139 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.337 0.663 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.015 0.985 33 H 0.011 0.989 34 H 0.258 0.742 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.278 9.198 -7.241 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.072 0.928 4 N -0.284 5.284 5 C -0.011 4.011 6 H 0.086 0.914 7 C -0.242 4.242 8 C -0.041 4.041 9 C -0.520 4.520 10 H 0.096 0.904 11 C -0.138 4.138 12 N -0.550 5.550 13 Si 0.701 3.299 14 H -0.207 1.207 15 H -0.218 1.218 16 H -0.195 1.195 17 C -0.149 4.149 18 C 0.167 3.833 19 F -0.079 7.079 20 C -0.188 4.188 21 C -0.084 4.084 22 C -0.199 4.199 23 C 0.101 3.899 24 F -0.118 7.118 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.976 8.512 -7.518 13.877 hybrid contribution 0.243 0.804 1.571 1.781 sum -7.733 9.316 -5.947 13.489 Atomic orbital electron populations 1.21952 0.94100 1.02911 1.01655 1.20185 0.94296 0.94858 0.89237 0.92812 1.60452 1.03876 1.58285 1.05767 1.21597 0.89637 0.92267 0.97586 0.91442 1.22597 1.01786 0.99409 1.00358 1.19600 0.94155 0.94766 0.95582 1.21017 1.34676 0.97391 0.98945 0.90437 1.24978 0.96224 0.95757 0.96832 1.69904 1.43735 1.05572 1.35740 0.86913 0.78134 0.77931 0.86964 1.20689 1.21829 1.19473 1.19913 1.05028 0.93284 0.96695 1.17039 0.93861 0.87964 0.84449 1.91614 1.82753 1.77168 1.56378 1.21282 1.02523 1.01478 0.93563 1.20716 0.96813 0.92669 0.98246 1.20970 1.05436 0.95405 0.98044 1.17211 1.00839 0.76685 0.95152 1.91451 1.94410 1.29352 1.96572 0.92209 0.92351 0.91419 0.84383 0.94019 0.93034 0.92411 0.96677 0.97063 0.93265 0.84345 0.84660 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.16 37.16 0.34 -1.63 16 2 C 0.12 2.02 2.41 -68.86 -0.17 1.85 16 3 H 0.05 0.87 6.20 -51.93 -0.32 0.54 16 4 N -0.65 -12.11 4.39 -100.95 -0.44 -12.55 16 5 C 0.10 1.97 2.34 -67.71 -0.16 1.81 16 6 H 0.07 1.46 7.73 -51.93 -0.40 1.06 16 7 C -0.18 -2.95 9.16 37.16 0.34 -2.61 16 8 C 0.00 -0.08 3.72 -27.88 -0.10 -0.19 16 9 C -0.48 -13.74 9.39 -34.44 -0.32 -14.06 16 10 H 0.08 2.39 7.39 -52.49 -0.39 2.00 16 11 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 12 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 13 Si 0.87 22.32 27.47 -169.99 -4.67 17.65 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 17 C -0.15 -2.55 4.72 -104.49 -0.49 -3.04 16 18 C 0.19 3.50 6.33 -39.43 -0.25 3.25 16 19 F -0.10 -2.14 15.29 2.25 0.03 -2.11 16 20 C -0.17 -2.80 10.03 -39.50 -0.40 -3.19 16 21 C -0.07 -0.91 10.04 -39.60 -0.40 -1.31 16 22 C -0.18 -2.51 10.02 -39.51 -0.40 -2.91 16 23 C 0.12 1.94 7.25 -39.43 -0.29 1.65 16 24 F -0.14 -2.18 16.27 2.25 0.04 -2.14 16 25 H 0.06 0.69 8.04 -51.92 -0.42 0.27 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 28 H 0.34 5.68 7.96 -39.29 -0.31 5.37 16 29 H 0.04 0.60 7.44 -51.93 -0.39 0.22 16 30 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 33 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 312.04 15.07 4.70 4.70 Total: -1.00 -31.66 312.04 -7.04 -38.70 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.08 Total: 2.02 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.39 Total: -18.67 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.33 Total: -40.16 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.07 Total: -4.25 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.66 -7.04 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411451204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.416 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds