Wall clock time and date at job start Mon Mar 30 2020 01:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47395 * 2 1 4 4 N 1.46901 * 109.46805 * 120.00487 * 2 1 3 5 5 C 1.46903 * 110.99375 * 207.15700 * 4 2 1 6 6 H 1.09000 * 109.47570 * 323.90359 * 5 4 2 7 7 C 1.52999 * 109.47354 * 83.90668 * 5 4 2 8 8 C 1.53006 * 109.47030 * 203.90402 * 5 4 2 9 9 C 1.50702 * 109.46998 * 64.99951 * 8 5 4 10 10 H 1.08001 * 120.00008 * 359.97438 * 9 8 5 11 11 C 1.37874 * 119.99817 * 180.02562 * 9 8 5 12 12 N 1.31517 * 120.00241 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 120.00035 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46809 * 90.00341 * 13 11 9 15 15 H 1.48499 * 109.47054 * 210.00460 * 13 11 9 16 16 H 1.48496 * 109.47210 * 330.00208 * 13 11 9 17 17 C 1.50703 * 109.46842 * 239.99999 * 2 1 3 18 18 C 1.38422 * 120.02858 * 285.25675 * 17 2 1 19 19 F 1.35099 * 120.01220 * 359.97438 * 18 17 2 20 20 C 1.38470 * 119.97706 * 180.24973 * 18 17 2 21 21 C 1.38214 * 120.02027 * 359.47197 * 20 18 17 22 22 C 1.38204 * 120.05341 * 0.29812 * 21 20 18 23 23 C 1.38420 * 120.02132 * 104.99915 * 17 2 1 24 24 F 1.35097 * 120.01798 * 0.02649 * 23 17 2 25 25 H 1.09008 * 109.47164 * 295.63524 * 1 2 3 26 26 H 1.08996 * 109.47165 * 55.63178 * 1 2 3 27 27 H 1.08999 * 109.47673 * 175.63398 * 1 2 3 28 28 H 1.00900 * 111.00066 * 331.10969 * 4 2 1 29 29 H 1.09001 * 109.46625 * 295.19384 * 7 5 4 30 30 H 1.09004 * 109.46828 * 55.18785 * 7 5 4 31 31 H 1.08991 * 109.47335 * 175.19317 * 7 5 4 32 32 H 1.08989 * 109.47175 * 185.00360 * 8 5 4 33 33 H 1.09004 * 109.47198 * 305.00178 * 8 5 4 34 34 H 0.96994 * 120.00494 * 179.97438 * 12 11 9 35 35 H 1.07994 * 119.99127 * 179.74189 * 20 18 17 36 36 H 1.07998 * 119.96972 * 180.26862 * 21 20 18 37 37 H 1.07996 * 119.99125 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3455 -0.1953 1.5900 6 1 3.9253 0.0345 0.6960 7 6 3.1871 1.0707 2.4344 8 6 4.0714 -1.2659 2.4073 9 6 4.3366 -2.4678 1.5377 10 1 4.0189 -2.4682 0.5055 11 6 4.9840 -3.5673 2.0601 12 7 5.2159 -4.6160 1.3011 13 14 5.5330 -3.5668 3.8457 14 1 4.4460 -4.1123 4.6978 15 1 6.7464 -4.4105 3.9907 16 1 5.8430 -2.1773 4.2679 17 6 2.0323 -0.7104 -1.2305 18 6 1.9658 -2.0908 -1.3090 19 9 1.4510 -2.8021 -0.2822 20 6 2.4324 -2.7428 -2.4380 21 6 2.9543 -2.0151 -3.4908 22 6 3.0168 -0.6365 -3.4155 23 6 2.5555 0.0173 -2.2853 24 9 2.6168 1.3649 -2.2120 25 1 -0.3634 0.4446 0.9266 26 1 -0.3633 0.5801 -0.8482 27 1 -0.3634 -1.0246 -0.0782 28 1 1.3625 -0.6064 1.9603 29 1 2.7473 1.8607 1.8257 30 1 2.5366 0.8617 3.2838 31 1 4.1642 1.3914 2.7953 32 1 5.0172 -0.8654 2.7720 33 1 3.4507 -1.5598 3.2538 34 1 5.6717 -5.3894 1.6686 35 1 2.3845 -3.8201 -2.4978 36 1 3.3139 -2.5242 -4.3727 37 1 3.4251 -0.0689 -4.2385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411451204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:10 Heat of formation + Delta-G solvation = -87.111376 kcal Electronic energy + Delta-G solvation = -21537.174643 eV Core-core repulsion = 18142.461442 eV Total energy + Delta-G solvation = -3394.713201 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.97537 -49.53591 -40.00169 -38.38333 -35.33365 -33.96588 -31.15678 -31.02397 -29.76299 -28.76979 -24.90565 -24.55368 -23.67467 -21.70016 -21.34938 -18.94902 -18.72721 -18.20451 -17.08348 -16.76968 -16.43678 -16.39013 -16.11183 -15.99357 -15.52520 -15.29564 -15.13749 -14.62398 -14.13417 -13.95483 -13.62685 -13.55365 -13.34701 -13.30912 -12.89247 -12.76854 -12.61270 -12.52976 -12.31775 -11.99520 -11.84106 -11.66563 -11.37405 -11.11201 -10.61561 -9.72958 -9.53970 -9.05693 -8.10664 -6.07154 0.09646 0.19885 1.37907 1.38656 1.49151 2.45504 2.49753 3.09583 3.18589 3.31573 3.63114 3.65359 3.97564 3.99247 4.14674 4.26119 4.29731 4.35279 4.44393 4.53037 4.72792 4.82285 4.93132 4.98938 5.05164 5.13693 5.15298 5.17431 5.17969 5.27427 5.31202 5.34040 5.54038 5.81245 5.94824 6.32325 6.56090 6.74295 7.00166 7.51819 9.06283 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.007749 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.080765 B = 3612.386716 C = 4313.070577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.126 3.874 3 H 0.058 0.942 4 N -0.671 5.671 5 C 0.106 3.894 6 H 0.043 0.957 7 C -0.171 4.171 8 C -0.002 4.002 9 C -0.479 4.479 10 H 0.042 0.958 11 C -0.002 4.002 12 N -0.955 5.955 13 Si 0.939 3.061 14 H -0.276 1.276 15 H -0.291 1.291 16 H -0.251 1.251 17 C -0.160 4.160 18 C 0.149 3.851 19 F -0.127 7.127 20 C -0.186 4.186 21 C -0.058 4.058 22 C -0.168 4.168 23 C 0.108 3.892 24 F -0.137 7.137 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.345 0.655 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.257 0.743 35 H 0.138 0.862 36 H 0.175 0.825 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.362 11.155 -7.060 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.076 0.924 4 N -0.303 5.303 5 C -0.004 4.004 6 H 0.062 0.938 7 C -0.230 4.230 8 C -0.040 4.040 9 C -0.517 4.517 10 H 0.060 0.940 11 C -0.197 4.197 12 N -0.598 5.598 13 Si 0.764 3.236 14 H -0.202 1.202 15 H -0.218 1.218 16 H -0.174 1.174 17 C -0.163 4.163 18 C 0.130 3.870 19 F -0.106 7.106 20 C -0.205 4.205 21 C -0.076 4.076 22 C -0.187 4.187 23 C 0.089 3.911 24 F -0.116 7.116 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.165 0.835 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.156 0.844 36 H 0.192 0.808 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.074 10.499 -7.334 15.139 hybrid contribution 0.265 0.195 1.365 1.404 sum -7.809 10.694 -5.968 14.524 Atomic orbital electron populations 1.21894 0.91924 1.02565 1.03384 1.20251 0.96025 0.94354 0.87749 0.92437 1.60281 1.03613 1.59562 1.06888 1.21318 0.89793 0.92698 0.96573 0.93818 1.22441 1.02558 0.97630 1.00336 1.19568 0.94765 0.94290 0.95402 1.21291 1.33344 0.98951 0.98152 0.93952 1.25851 0.96817 0.95478 1.01543 1.70070 1.45351 1.06472 1.37938 0.85838 0.77601 0.78824 0.81307 1.20150 1.21787 1.17431 1.20103 1.05394 0.92995 0.97766 1.17428 0.95971 0.88805 0.84842 1.91532 1.83529 1.77820 1.57682 1.21542 1.02983 1.01935 0.94049 1.21152 0.95216 0.92774 0.98432 1.21414 1.03585 0.95619 0.98068 1.17409 1.01224 0.76865 0.95640 1.91452 1.94426 1.29081 1.96609 0.90217 0.90826 0.92765 0.83454 0.92104 0.91636 0.92050 0.96610 0.96765 0.93396 0.84392 0.80786 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.16 71.98 0.66 -2.90 16 2 C 0.13 4.02 2.41 44.17 0.11 4.13 16 3 H 0.06 1.77 6.20 -2.39 -0.01 1.76 16 4 N -0.67 -24.79 4.39 -473.30 -2.08 -26.87 16 5 C 0.11 4.16 2.34 44.92 0.11 4.26 16 6 H 0.04 1.90 7.73 -2.39 -0.02 1.88 16 7 C -0.17 -5.08 9.16 71.98 0.66 -4.42 16 8 C 0.00 -0.12 3.72 29.85 0.11 -0.01 16 9 C -0.48 -27.89 9.39 25.60 0.24 -27.65 16 10 H 0.04 2.72 7.39 -2.91 -0.02 2.70 16 11 C 0.00 -0.14 5.47 84.65 0.46 0.32 16 12 N -0.96 -61.42 13.96 21.45 0.30 -61.12 16 13 Si 0.94 46.15 27.47 68.60 1.88 48.04 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 16 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 17 C -0.16 -5.60 4.72 -19.78 -0.09 -5.70 16 18 C 0.15 5.81 6.33 22.37 0.14 5.95 16 19 F -0.13 -5.72 15.29 44.97 0.69 -5.03 16 20 C -0.19 -6.29 10.03 22.32 0.22 -6.07 16 21 C -0.06 -1.51 10.04 22.26 0.22 -1.29 16 22 C -0.17 -4.34 10.02 22.32 0.22 -4.12 16 23 C 0.11 3.36 7.25 22.37 0.16 3.52 16 24 F -0.14 -4.06 16.27 44.97 0.73 -3.33 16 25 H 0.08 1.68 8.04 -2.38 -0.02 1.66 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.52 7.52 -2.39 -0.02 1.50 16 28 H 0.35 11.35 7.96 -89.69 -0.71 10.63 16 29 H 0.06 1.59 7.44 -2.39 -0.02 1.57 16 30 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 33 H 0.01 0.66 7.57 -2.38 -0.02 0.65 16 34 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 36 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -70.42 312.04 5.06 -65.37 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.31 Total: 16.91 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 3.23 Total: -33.96 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.78 Total: -88.00 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 1.42 Total: -8.36 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.04 kcal Total: -70.42 5.06 -65.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411451204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.743 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds