Wall clock time and date at job start Mon Mar 30 2020 01:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 116.99991 * 2 1 4 4 O 1.20824 * 120.00125 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00358 * 180.02562 * 3 2 1 6 6 N 1.46491 * 109.47419 * 179.97438 * 5 3 2 7 7 C 1.37099 * 120.00096 * 93.39385 * 6 5 3 8 8 H 1.08002 * 120.00182 * 300.46301 * 7 6 5 9 9 C 1.38957 * 120.00301 * 120.73856 * 7 6 5 10 10 N 1.31409 * 119.99654 * 331.37199 * 9 7 6 11 11 Si 1.86790 * 120.00230 * 151.36713 * 9 7 6 12 12 H 1.48503 * 109.47052 * 60.00184 * 11 9 7 13 13 H 1.48496 * 109.47417 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47101 * 300.00317 * 11 9 7 15 15 C 1.34779 * 120.00319 * 273.39352 * 6 5 3 16 16 O 1.21290 * 120.00356 * 175.12562 * 15 6 5 17 17 C 1.50701 * 119.99760 * 355.12075 * 15 6 5 18 18 H 1.09000 * 109.46838 * 31.72834 * 17 15 6 19 19 C 1.52995 * 109.47393 * 271.72886 * 17 15 6 20 20 C 1.52998 * 109.47118 * 151.72428 * 17 15 6 21 21 C 1.53784 * 113.61798 * 279.13944 * 20 17 15 22 22 C 1.53954 * 87.01904 * 220.04826 * 21 20 17 23 23 C 1.53780 * 87.11335 * 25.36362 * 22 21 20 24 24 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47001 * 300.00218 * 1 2 3 26 26 H 1.08994 * 109.47391 * 60.00318 * 1 2 3 27 27 H 1.09005 * 109.47237 * 59.99373 * 5 3 2 28 28 H 1.09006 * 109.46671 * 299.99572 * 5 3 2 29 29 H 0.97002 * 120.00208 * 185.07577 * 10 9 7 30 30 H 1.09004 * 109.46972 * 52.48292 * 19 17 15 31 31 H 1.08997 * 109.47167 * 172.48203 * 19 17 15 32 32 H 1.09000 * 109.46782 * 292.48428 * 19 17 15 33 33 H 1.08999 * 112.84484 * 50.33895 * 20 17 15 34 34 H 1.09003 * 113.60776 * 334.56917 * 21 20 17 35 35 H 1.08998 * 113.60945 * 105.46601 * 21 20 17 36 36 H 1.09003 * 113.53525 * 270.80694 * 22 21 20 37 37 H 1.09000 * 113.74100 * 139.94468 * 22 21 20 38 38 H 1.09003 * 113.61198 * 220.09185 * 23 22 21 39 39 H 1.08997 * 113.61476 * 89.18398 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.2438 3.3175 1.1839 8 1 3.4725 3.3992 1.9354 9 6 5.5002 3.8639 1.4157 10 7 6.5603 3.3404 0.8421 11 14 5.6823 5.3424 2.5427 12 1 5.1863 4.9953 3.8987 13 1 7.1135 5.7304 2.6229 14 1 4.8918 6.4773 2.0019 15 6 4.1060 3.3454 -1.1664 16 8 4.3634 4.5306 -1.1634 17 6 3.9253 2.6168 -2.4732 18 1 3.2001 1.8135 -2.3440 19 6 5.2653 2.0275 -2.9181 20 6 3.4198 3.5942 -3.5363 21 6 1.9056 3.8531 -3.4649 22 6 1.9084 3.8183 -5.0040 23 6 3.1662 2.9392 -4.9044 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 3.9557 0.7809 -0.8908 28 1 3.9563 0.7807 0.8893 29 1 7.4445 3.6741 1.0606 30 1 5.6897 1.4365 -2.1065 31 1 5.1109 1.3907 -3.7891 32 1 5.9500 2.8356 -3.1756 33 1 4.0164 4.5047 -3.5920 34 1 1.3441 3.0368 -3.0106 35 1 1.6485 4.8276 -3.0497 36 1 2.0904 4.7910 -5.4611 37 1 1.0487 3.3034 -5.4329 38 1 3.9252 3.1770 -5.6497 39 1 2.9498 1.8726 -4.8444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457569902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:19 Heat of formation + Delta-G solvation = -118.853700 kcal Electronic energy + Delta-G solvation = -22155.371168 eV Core-core repulsion = 18870.369032 eV Total energy + Delta-G solvation = -3285.002136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65993 -40.70239 -39.11629 -37.45628 -36.14964 -34.39142 -33.21570 -30.03690 -27.85241 -27.21293 -26.52534 -26.11109 -23.76810 -22.23415 -20.90899 -20.10635 -18.83874 -18.66805 -17.92951 -17.39738 -17.04458 -16.80038 -16.40516 -15.97854 -15.53389 -15.30937 -14.52556 -14.50632 -14.34818 -13.67835 -13.58238 -13.48767 -13.34356 -13.00081 -12.95700 -12.91784 -12.77529 -12.71703 -12.50431 -12.19355 -12.05180 -11.73946 -11.59607 -11.38199 -11.18427 -10.97196 -10.73074 -10.16134 -9.27474 -8.38631 -6.20684 1.23932 1.29547 1.39476 1.45729 1.66330 2.15180 2.47313 2.94761 3.07903 3.67067 3.74064 3.80030 3.97642 4.01561 4.14733 4.25315 4.31301 4.36653 4.37071 4.51707 4.56230 4.61931 4.72532 4.83681 4.85484 4.88907 4.96995 5.03718 5.08978 5.15457 5.34319 5.37544 5.42218 5.45804 5.64663 6.19259 6.81234 6.95700 7.02280 7.47633 8.14717 8.66871 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.008784 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.705808 B = 3186.953672 C = 4376.420106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.444 3.556 4 O -0.531 6.531 5 C 0.109 3.891 6 N -0.451 5.451 7 C -0.375 4.375 8 H 0.055 0.945 9 C 0.048 3.952 10 N -0.865 5.865 11 Si 0.956 3.044 12 H -0.255 1.255 13 H -0.273 1.273 14 H -0.293 1.293 15 C 0.499 3.501 16 O -0.603 6.603 17 C -0.094 4.094 18 H 0.086 0.914 19 C -0.125 4.125 20 C -0.100 4.100 21 C -0.143 4.143 22 C -0.126 4.126 23 C -0.115 4.115 24 H 0.139 0.861 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.271 0.729 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -10.008 -8.945 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.286 3.714 4 O -0.420 6.420 5 C -0.016 4.016 6 N -0.172 5.172 7 C -0.502 4.502 8 H 0.073 0.927 9 C -0.160 4.160 10 N -0.498 5.498 11 Si 0.781 3.219 12 H -0.179 1.179 13 H -0.198 1.198 14 H -0.220 1.220 15 C 0.290 3.710 16 O -0.486 6.486 17 C -0.115 4.115 18 H 0.104 0.896 19 C -0.183 4.183 20 C -0.119 4.119 21 C -0.181 4.181 22 C -0.163 4.163 23 C -0.153 4.153 24 H 0.157 0.843 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.380 -9.093 -8.984 14.760 hybrid contribution -0.033 1.254 1.182 1.724 sum -7.413 -7.839 -7.802 13.314 Atomic orbital electron populations 1.23517 0.75307 1.05682 1.02038 1.86511 1.24658 1.32335 1.83998 1.25099 0.93400 0.81381 0.71481 1.90653 1.67566 1.37802 1.45933 1.21374 0.85789 0.87548 1.06914 1.43040 1.61305 1.07676 1.05228 1.18807 0.96198 1.38962 0.96202 0.92686 1.26015 0.94745 0.97980 0.97287 1.69931 0.98463 1.38820 1.42623 0.85606 0.77232 0.79957 0.79101 1.17889 1.19782 1.21989 1.21192 0.76794 0.86895 0.86136 1.90444 1.52109 1.18269 1.87759 1.21324 1.00030 0.98105 0.92059 0.89589 1.21591 0.94011 1.00543 1.02128 1.22398 0.95949 0.98041 0.95518 1.22955 0.96292 1.00418 0.98397 1.22779 0.99019 1.00735 0.93768 1.22900 0.97861 1.00019 0.94480 0.84315 0.92954 0.92212 0.85548 0.86018 0.92009 0.92919 0.88171 0.94063 0.91411 0.91070 0.94504 0.89959 0.89488 0.90011 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -10.62 10.56 -51.40 -0.54 -11.16 16 3 C 0.44 16.86 7.49 71.24 0.53 17.39 16 4 O -0.53 -24.32 16.12 21.97 0.35 -23.97 16 5 C 0.11 4.32 5.60 85.63 0.48 4.80 16 6 N -0.45 -23.27 1.89 -639.59 -1.21 -24.48 16 7 C -0.37 -21.75 8.69 84.04 0.73 -21.02 16 8 H 0.06 3.29 7.97 -2.91 -0.02 3.27 16 9 C 0.05 2.77 4.52 84.93 0.38 3.15 16 10 N -0.87 -49.88 13.64 21.66 0.30 -49.59 16 11 Si 0.96 46.96 29.64 68.60 2.03 48.99 16 12 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 15 C 0.50 25.88 6.29 87.66 0.55 26.43 16 16 O -0.60 -37.24 15.45 -3.06 -0.05 -37.28 16 17 C -0.09 -3.57 1.62 -11.54 -0.02 -3.59 16 18 H 0.09 2.95 6.00 -2.39 -0.01 2.93 16 19 C -0.13 -4.15 8.67 71.98 0.62 -3.53 16 20 C -0.10 -3.52 2.78 -10.27 -0.03 -3.54 16 21 C -0.14 -4.83 7.62 31.18 0.24 -4.59 16 22 C -0.13 -3.03 8.09 31.18 0.25 -2.78 16 23 C -0.12 -2.76 6.90 31.12 0.21 -2.54 16 24 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 26 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 27 H 0.13 4.14 5.84 -2.38 -0.01 4.13 16 28 H 0.12 4.62 8.01 -2.38 -0.02 4.60 16 29 H 0.27 14.79 8.32 -92.71 -0.77 14.02 16 30 H 0.05 1.85 7.61 -2.39 -0.02 1.83 16 31 H 0.10 2.38 7.76 -2.39 -0.02 2.36 16 32 H 0.04 1.50 8.13 -2.39 -0.02 1.48 16 33 H 0.07 2.78 7.67 -2.39 -0.02 2.77 16 34 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 Total: -1.00 -77.32 327.83 7.07 -70.25 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.03 Total: 15.25 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.16 Total: 11.99 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -0.92 Total: -74.07 kcal Atomic # 8 Polarization: -72.18 SS G_CDS: -0.24 Total: -72.41 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -77.32 7.07 -70.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457569902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.600 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds