Wall clock time and date at job start Mon Mar 30 2020 01:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47319 * 2 1 4 4 C 1.50699 * 109.47087 * 120.00392 * 2 1 3 5 5 O 1.20826 * 119.99874 * 119.99578 * 4 2 1 6 6 O 1.34230 * 119.99832 * 299.99548 * 4 2 1 7 7 C 1.50701 * 109.46592 * 239.99965 * 2 1 3 8 8 O 1.21286 * 120.00395 * 272.74986 * 7 2 1 9 9 N 1.34781 * 120.00135 * 92.75884 * 7 2 1 10 10 C 1.46925 * 120.63429 * 174.63091 * 9 7 2 11 11 C 1.53191 * 108.77193 * 233.58111 * 10 9 7 12 12 C 1.53036 * 109.31508 * 305.36440 * 11 10 9 13 13 C 1.53001 * 109.45749 * 181.38756 * 12 11 10 14 14 C 1.50700 * 109.47466 * 64.93308 * 13 12 11 15 15 H 1.08005 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00534 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99718 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00435 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47129 * 60.00127 * 18 16 14 20 20 H 1.48504 * 109.47349 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47404 * 300.00109 * 18 16 14 22 22 C 1.53036 * 109.53917 * 61.36339 * 12 11 10 23 23 C 1.46934 * 120.62628 * 354.60035 * 9 7 2 24 24 H 1.09000 * 109.46802 * 295.84876 * 1 2 3 25 25 H 1.08997 * 109.47187 * 55.84832 * 1 2 3 26 26 H 1.09002 * 109.47373 * 175.85151 * 1 2 3 27 27 H 0.96693 * 116.99820 * 180.02562 * 6 4 2 28 28 H 1.09003 * 109.58205 * 353.36752 * 10 9 7 29 29 H 1.08995 * 109.58995 * 113.79534 * 10 9 7 30 30 H 1.08999 * 109.49751 * 65.32025 * 11 10 9 31 31 H 1.09006 * 109.49406 * 185.40469 * 11 10 9 32 32 H 1.09000 * 109.45748 * 301.34288 * 12 11 10 33 33 H 1.09003 * 109.46743 * 184.93058 * 13 12 11 34 34 H 1.08999 * 109.47475 * 304.92661 * 13 12 11 35 35 H 0.96993 * 120.00219 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.49810 * 178.68128 * 22 12 11 37 37 H 1.09007 * 109.52269 * 58.60547 * 22 12 11 38 38 H 1.08999 * 109.58806 * 246.20542 * 23 9 7 39 39 H 1.08997 * 109.58684 * 6.48902 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7269 -1.6929 1.1195 6 8 1.7081 -0.2519 2.4496 7 6 2.0322 -0.7104 -1.2305 8 8 2.1868 -1.9133 -1.2157 9 7 2.3097 -0.0091 -2.3475 10 6 2.9100 -0.6681 -3.5155 11 6 4.1745 0.0975 -3.9177 12 6 3.8254 1.5711 -4.1379 13 6 5.0792 2.3323 -4.5734 14 6 5.5343 1.8237 -5.9170 15 1 4.9846 1.0360 -6.4108 16 6 6.6525 2.3639 -6.5161 17 7 7.3217 3.3234 -5.9150 18 14 7.2170 1.7330 -8.1811 19 1 6.1387 1.9409 -9.1808 20 1 8.4331 2.4727 -8.6044 21 1 7.5276 0.2842 -8.0822 22 6 3.2916 2.1709 -2.8351 23 6 2.0171 1.4289 -2.4205 24 1 -0.3633 0.4481 0.9249 25 1 -0.3633 0.5769 -0.8504 26 1 -0.3634 -1.0250 -0.0743 27 1 2.0541 -0.7407 3.2087 28 1 3.1702 -1.6957 -3.2615 29 1 2.2006 -0.6624 -4.3430 30 1 4.9178 0.0142 -3.1249 31 1 4.5765 -0.3230 -4.8396 32 1 3.0640 1.6519 -4.9137 33 1 4.8517 3.3959 -4.6456 34 1 5.8706 2.1790 -3.8398 35 1 8.1081 3.7038 -6.3366 36 1 3.0652 3.2263 -2.9864 37 1 4.0431 2.0686 -2.0522 38 1 1.2349 1.6057 -3.1588 39 1 1.6858 1.7844 -1.4449 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566235702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:54 Heat of formation + Delta-G solvation = -142.295696 kcal Electronic energy + Delta-G solvation = -21147.647213 eV Core-core repulsion = 17861.628556 eV Total energy + Delta-G solvation = -3286.018657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97833 -39.57479 -37.40569 -36.13805 -34.29927 -33.54186 -32.03601 -30.70580 -28.11608 -25.78044 -24.68818 -23.41335 -22.40967 -21.41315 -19.75034 -18.65679 -18.30694 -17.23588 -16.66852 -16.22495 -15.89066 -15.39632 -14.97759 -14.54504 -14.04827 -13.89770 -13.60048 -13.26335 -13.20040 -12.88926 -12.52614 -12.38887 -12.23503 -12.00982 -11.86670 -11.59381 -11.20629 -11.06161 -10.79175 -10.69854 -10.55863 -10.44110 -10.20549 -9.70268 -9.62817 -9.29417 -9.00097 -8.40297 -8.35479 -6.01293 -4.03300 2.05354 2.32981 2.79689 3.25172 3.32327 3.37224 3.39324 4.17576 4.44541 4.55796 4.60927 4.89312 5.12170 5.26403 5.28399 5.32185 5.34184 5.44194 5.54293 5.62951 5.72203 5.79378 5.93729 6.03604 6.29704 6.30726 6.32114 6.49337 6.61249 6.94871 6.98545 7.08744 7.46211 7.63668 7.72185 7.78319 7.97867 8.20394 8.40417 9.02826 9.60766 11.09964 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035617 B = 0.003903 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.950933 B = 7172.500609 C = 7274.600628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.131 0.869 4 C 0.484 3.516 5 O -0.478 6.478 6 O -0.517 6.517 7 C 0.520 3.480 8 O -0.514 6.514 9 N -0.603 5.603 10 C 0.111 3.889 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.132 4.132 23 C 0.102 3.898 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.412 0.588 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 -2.679 13.013 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.148 0.852 4 C 0.323 3.677 5 O -0.363 6.363 6 O -0.330 6.330 7 C 0.306 3.694 8 O -0.389 6.389 9 N -0.337 5.337 10 C -0.010 4.010 11 C -0.157 4.157 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.170 4.170 23 C -0.021 4.021 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.271 0.729 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.290 -3.300 12.612 19.343 hybrid contribution 0.758 -0.373 -0.454 0.959 sum -13.532 -3.674 12.158 18.559 Atomic orbital electron populations 1.21692 0.89476 1.04032 1.04305 1.21079 1.00241 1.02023 0.89678 0.85193 1.22618 0.77959 0.82768 0.84318 1.90847 1.34042 1.24657 1.86711 1.84466 1.72717 1.59214 1.16621 1.19673 0.78575 0.87492 0.83689 1.90765 1.51508 1.13769 1.82840 1.48099 1.61580 1.09742 1.14257 1.21809 0.95547 0.97597 0.86087 1.21912 0.95295 0.96191 1.02278 1.21195 1.00140 0.94375 0.94245 1.19118 0.90845 0.94898 0.96030 1.21200 1.10803 1.19807 1.03784 0.92626 1.25011 0.96684 0.95073 0.97620 1.69949 1.18752 1.26248 1.38588 0.86701 0.78080 0.79007 0.84475 1.20288 1.21362 1.20240 1.22056 0.95888 0.99440 0.99660 1.21955 0.98802 0.79646 1.01668 0.89963 0.90332 0.91241 0.72919 0.89613 0.91667 0.92331 0.89624 0.92226 0.96590 0.96654 0.92987 0.90861 0.91954 0.90986 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.13 37.16 0.34 -0.74 16 2 C -0.11 -1.17 2.41 -92.92 -0.22 -1.39 16 3 H 0.13 1.10 6.05 -51.93 -0.31 0.79 16 4 C 0.48 5.93 7.57 36.01 0.27 6.21 16 5 O -0.48 -8.08 15.48 -26.41 -0.41 -8.49 16 6 O -0.52 -4.29 13.25 -39.26 -0.52 -4.81 16 7 C 0.52 7.77 6.56 -10.98 -0.07 7.70 16 8 O -0.51 -9.84 14.45 -17.56 -0.25 -10.09 16 9 N -0.60 -8.54 2.97 -172.77 -0.51 -9.05 16 10 C 0.11 1.73 6.42 -3.71 -0.02 1.71 16 11 C -0.12 -2.14 5.19 -26.61 -0.14 -2.28 16 12 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 13 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -13.98 8.39 -34.44 -0.29 -14.27 16 15 H 0.06 1.45 7.06 -52.48 -0.37 1.08 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.13 -1.95 5.36 -26.62 -0.14 -2.09 16 23 C 0.10 1.18 6.30 -3.71 -0.02 1.15 16 24 H 0.08 0.50 8.02 -51.93 -0.42 0.09 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.41 1.78 9.10 45.56 0.41 2.19 16 28 H 0.09 1.43 7.04 -51.93 -0.37 1.06 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.66 6.91 -51.93 -0.36 1.30 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.66 5.38 -51.93 -0.28 0.38 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -35.03 318.91 -6.94 -41.97 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.05 Total: -1.26 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.71 Total: -3.64 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.22 Total: -34.77 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -1.18 Total: -23.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.03 -6.94 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566235702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.328 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds