Wall clock time and date at job start Mon Mar 30 2020 01:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47319 * 2 1 4 4 C 1.50699 * 109.47087 * 120.00392 * 2 1 3 5 5 O 1.20826 * 119.99874 * 119.99578 * 4 2 1 6 6 O 1.34230 * 119.99832 * 299.99548 * 4 2 1 7 7 C 1.50701 * 109.46592 * 239.99965 * 2 1 3 8 8 O 1.21286 * 120.00395 * 272.74986 * 7 2 1 9 9 N 1.34781 * 120.00135 * 92.75884 * 7 2 1 10 10 C 1.46925 * 120.63429 * 174.63091 * 9 7 2 11 11 C 1.53191 * 108.77193 * 233.58111 * 10 9 7 12 12 C 1.53036 * 109.31508 * 305.36440 * 11 10 9 13 13 C 1.53001 * 109.45749 * 181.38756 * 12 11 10 14 14 C 1.50700 * 109.47466 * 64.93308 * 13 12 11 15 15 H 1.08005 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00534 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99718 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00435 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47129 * 60.00127 * 18 16 14 20 20 H 1.48504 * 109.47349 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47404 * 300.00109 * 18 16 14 22 22 C 1.53036 * 109.53917 * 61.36339 * 12 11 10 23 23 C 1.46934 * 120.62628 * 354.60035 * 9 7 2 24 24 H 1.09000 * 109.46802 * 295.84876 * 1 2 3 25 25 H 1.08997 * 109.47187 * 55.84832 * 1 2 3 26 26 H 1.09002 * 109.47373 * 175.85151 * 1 2 3 27 27 H 0.96693 * 116.99820 * 180.02562 * 6 4 2 28 28 H 1.09003 * 109.58205 * 353.36752 * 10 9 7 29 29 H 1.08995 * 109.58995 * 113.79534 * 10 9 7 30 30 H 1.08999 * 109.49751 * 65.32025 * 11 10 9 31 31 H 1.09006 * 109.49406 * 185.40469 * 11 10 9 32 32 H 1.09000 * 109.45748 * 301.34288 * 12 11 10 33 33 H 1.09003 * 109.46743 * 184.93058 * 13 12 11 34 34 H 1.08999 * 109.47475 * 304.92661 * 13 12 11 35 35 H 0.96993 * 120.00219 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.49810 * 178.68128 * 22 12 11 37 37 H 1.09007 * 109.52269 * 58.60547 * 22 12 11 38 38 H 1.08999 * 109.58806 * 246.20542 * 23 9 7 39 39 H 1.08997 * 109.58684 * 6.48902 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7269 -1.6929 1.1195 6 8 1.7081 -0.2519 2.4496 7 6 2.0322 -0.7104 -1.2305 8 8 2.1868 -1.9133 -1.2157 9 7 2.3097 -0.0091 -2.3475 10 6 2.9100 -0.6681 -3.5155 11 6 4.1745 0.0975 -3.9177 12 6 3.8254 1.5711 -4.1379 13 6 5.0792 2.3323 -4.5734 14 6 5.5343 1.8237 -5.9170 15 1 4.9846 1.0360 -6.4108 16 6 6.6525 2.3639 -6.5161 17 7 7.3217 3.3234 -5.9150 18 14 7.2170 1.7330 -8.1811 19 1 6.1387 1.9409 -9.1808 20 1 8.4331 2.4727 -8.6044 21 1 7.5276 0.2842 -8.0822 22 6 3.2916 2.1709 -2.8351 23 6 2.0171 1.4289 -2.4205 24 1 -0.3633 0.4481 0.9249 25 1 -0.3633 0.5769 -0.8504 26 1 -0.3634 -1.0250 -0.0743 27 1 2.0541 -0.7407 3.2087 28 1 3.1702 -1.6957 -3.2615 29 1 2.2006 -0.6624 -4.3430 30 1 4.9178 0.0142 -3.1249 31 1 4.5765 -0.3230 -4.8396 32 1 3.0640 1.6519 -4.9137 33 1 4.8517 3.3959 -4.6456 34 1 5.8706 2.1790 -3.8398 35 1 8.1081 3.7038 -6.3366 36 1 3.0652 3.2263 -2.9864 37 1 4.0431 2.0686 -2.0522 38 1 1.2349 1.6057 -3.1588 39 1 1.6858 1.7844 -1.4449 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566235702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:54 Heat of formation + Delta-G solvation = -166.035843 kcal Electronic energy + Delta-G solvation = -21148.676663 eV Core-core repulsion = 17861.628556 eV Total energy + Delta-G solvation = -3287.048107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.99140 -40.64361 -38.70339 -37.05015 -35.77334 -34.73897 -33.74488 -31.90284 -29.83918 -26.74096 -26.14360 -24.63030 -23.75880 -22.74037 -21.08865 -19.83884 -19.23580 -18.42464 -18.20756 -17.56978 -16.87763 -16.53700 -16.44377 -16.07519 -15.29244 -15.08243 -14.67567 -14.55114 -14.48265 -14.25588 -13.89168 -13.52817 -13.20677 -13.13358 -12.99101 -12.79870 -12.74272 -12.51614 -12.46013 -12.32727 -12.09048 -11.81529 -11.49424 -11.30238 -11.04564 -10.99226 -10.65633 -10.50418 -9.62201 -8.16478 -6.25256 1.15197 1.33207 1.40842 1.42710 1.50074 1.78385 2.31132 2.42585 3.17314 3.21630 3.78051 3.86654 3.96625 4.05991 4.13083 4.20972 4.31453 4.43348 4.58973 4.70626 4.76143 4.77767 4.84108 4.90017 5.00490 5.11697 5.19970 5.31196 5.35355 5.39557 5.55950 5.58158 5.60413 5.82541 5.91665 6.30449 6.37694 6.91577 6.93601 7.10882 7.43307 8.95010 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035617 B = 0.003903 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.950933 B = 7172.500609 C = 7274.600628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 H 0.162 0.838 4 C 0.488 3.512 5 O -0.536 6.536 6 O -0.500 6.500 7 C 0.514 3.486 8 O -0.565 6.565 9 N -0.604 5.604 10 C 0.120 3.880 11 C -0.111 4.111 12 C -0.074 4.074 13 C 0.032 3.968 14 C -0.530 4.530 15 H 0.062 0.938 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.956 3.044 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.271 1.271 22 C -0.128 4.128 23 C 0.105 3.895 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.430 0.570 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.067 0.933 33 H -0.005 1.005 34 H -0.018 1.018 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.015 -1.872 13.372 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 H 0.179 0.821 4 C 0.330 3.670 5 O -0.425 6.425 6 O -0.313 6.313 7 C 0.301 3.699 8 O -0.443 6.443 9 N -0.336 5.336 10 C -0.003 4.003 11 C -0.149 4.149 12 C -0.093 4.093 13 C -0.005 4.005 14 C -0.568 4.568 15 H 0.080 0.920 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.781 3.219 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.167 4.167 23 C -0.016 4.016 24 H 0.125 0.875 25 H 0.119 0.881 26 H 0.071 0.929 27 H 0.292 0.708 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.013 0.987 34 H 0.000 1.000 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.755 -2.458 12.998 21.347 hybrid contribution 1.540 -0.587 -0.500 1.723 sum -15.215 -3.045 12.497 19.923 Atomic orbital electron populations 1.21764 0.86756 1.03769 1.06653 1.21180 1.02198 1.02368 0.86809 0.82117 1.22950 0.76646 0.81801 0.85633 1.90842 1.36785 1.27268 1.87579 1.84419 1.71978 1.58782 1.16161 1.20422 0.77622 0.87135 0.84681 1.90744 1.53639 1.16213 1.83667 1.48197 1.60940 1.10861 1.13643 1.21570 0.94749 0.96425 0.87526 1.21760 0.96192 0.96359 1.00613 1.21050 0.97556 0.93889 0.96754 1.19022 0.92627 0.94386 0.94426 1.21672 1.10807 1.19565 1.04792 0.91971 1.25901 0.97017 0.95334 1.01533 1.70085 1.19357 1.27758 1.40396 0.85639 0.77765 0.78452 0.80039 1.18988 1.21249 1.19646 1.21985 0.97282 1.00524 0.96870 1.22164 0.97302 0.77292 1.04803 0.87502 0.88070 0.92869 0.70777 0.91191 0.89684 0.94559 0.91540 0.91458 0.98677 0.99980 0.93034 0.89459 0.93156 0.88490 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 9.13 71.98 0.66 -0.88 16 2 C -0.10 -1.92 2.41 -12.29 -0.03 -1.95 16 3 H 0.16 1.94 6.05 -2.39 -0.01 1.92 16 4 C 0.49 11.11 7.57 71.24 0.54 11.65 16 5 O -0.54 -18.23 15.48 29.29 0.45 -17.77 16 6 O -0.50 -6.83 13.25 -51.42 -0.68 -7.52 16 7 C 0.51 14.60 6.56 87.66 0.58 15.17 16 8 O -0.56 -21.84 14.45 19.05 0.28 -21.56 16 9 N -0.60 -15.84 2.97 -818.89 -2.43 -18.28 16 10 C 0.12 3.66 6.42 86.36 0.55 4.21 16 11 C -0.11 -4.07 5.19 30.67 0.16 -3.91 16 12 C -0.07 -2.73 2.10 -10.77 -0.02 -2.75 16 13 C 0.03 1.63 4.45 29.85 0.13 1.76 16 14 C -0.53 -29.09 8.39 25.60 0.21 -28.87 16 15 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 17 N -0.94 -56.53 13.29 21.45 0.28 -56.24 16 18 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.13 -3.53 5.36 30.67 0.16 -3.37 16 23 C 0.11 2.01 6.30 86.36 0.54 2.56 16 24 H 0.11 0.77 8.02 -2.39 -0.02 0.75 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.43 2.67 9.10 -74.06 -0.67 1.99 16 28 H 0.07 2.38 7.04 -2.39 -0.02 2.36 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.07 2.65 6.91 -2.38 -0.02 2.63 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.50 8.14 -2.38 -0.02 1.49 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.12 1.33 5.38 -2.39 -0.01 1.32 16 Total: -1.00 -80.46 318.91 4.26 -76.20 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 0.38 Total: 5.08 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 3.95 Total: -5.95 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -2.15 Total: -74.52 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: 0.05 Total: -46.85 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -80.46 4.26 -76.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566235702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.836 kcal (2) G-P(sol) polarization free energy of solvation -80.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds