Wall clock time and date at job start Mon Mar 30 2020 01:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47121 * 2 1 4 4 C 1.50702 * 109.47400 * 240.00089 * 2 1 3 5 5 O 1.20822 * 119.99972 * 240.00346 * 4 2 1 6 6 O 1.34235 * 120.00044 * 59.99509 * 4 2 1 7 7 C 1.50701 * 109.47358 * 119.99604 * 2 1 3 8 8 O 1.21283 * 119.99477 * 23.64244 * 7 2 1 9 9 N 1.34768 * 119.99992 * 203.63955 * 7 2 1 10 10 C 1.46926 * 120.63325 * 4.74841 * 9 7 2 11 11 C 1.52764 * 109.00709 * 233.58391 * 10 9 7 12 12 C 1.53045 * 109.38285 * 305.58623 * 11 10 9 13 13 C 1.52998 * 109.44968 * 181.25869 * 12 11 10 14 14 C 1.50693 * 109.47286 * 64.93662 * 13 12 11 15 15 H 1.07999 * 120.00539 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99798 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00005 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00023 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47226 * 90.00468 * 18 16 14 20 20 H 1.48507 * 109.47043 * 210.00198 * 18 16 14 21 21 H 1.48501 * 109.47143 * 330.00178 * 18 16 14 22 22 C 1.53035 * 109.54059 * 61.23921 * 12 11 10 23 23 C 1.46933 * 120.62959 * 185.02347 * 9 7 2 24 24 H 1.09001 * 109.47667 * 54.87110 * 1 2 3 25 25 H 1.09000 * 109.47172 * 174.87179 * 1 2 3 26 26 H 1.09001 * 109.47387 * 294.86931 * 1 2 3 27 27 H 0.96694 * 117.00159 * 180.02562 * 6 4 2 28 28 H 1.08995 * 109.58809 * 353.41484 * 10 9 7 29 29 H 1.09000 * 109.58811 * 113.84127 * 10 9 7 30 30 H 1.09002 * 109.56525 * 185.55281 * 11 10 9 31 31 H 1.08998 * 109.36624 * 65.49605 * 11 10 9 32 32 H 1.09004 * 109.45648 * 301.21906 * 12 11 10 33 33 H 1.08997 * 109.47113 * 184.93753 * 13 12 11 34 34 H 1.09004 * 109.46669 * 304.93206 * 13 12 11 35 35 H 0.96993 * 120.00254 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.50427 * 178.68188 * 22 12 11 37 37 H 1.09004 * 109.49894 * 58.58530 * 22 12 11 38 38 H 1.08998 * 109.58813 * 246.15693 * 23 9 7 39 39 H 1.08996 * 109.58294 * 6.44174 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7269 -1.6928 -1.1196 6 8 1.7080 -0.2518 -2.4497 7 6 2.0323 -0.7103 1.2305 8 8 1.3273 -1.5213 1.7928 9 7 3.2650 -0.4444 1.7060 10 6 4.0905 0.6085 1.0989 11 6 5.4479 0.0196 0.7190 12 6 6.0762 -0.6423 1.9476 13 6 7.4496 -1.2052 1.5766 14 6 8.3756 -0.0729 1.2145 15 1 8.0203 0.9465 1.2462 16 6 9.6766 -0.3382 0.8426 17 7 10.4846 0.6500 0.5261 18 14 10.2914 -2.1013 0.7884 19 1 10.0519 -2.6677 -0.5633 20 1 11.7462 -2.1275 1.0854 21 1 9.5649 -2.9102 1.7999 22 6 5.1740 -1.7784 2.4346 23 6 3.8113 -1.2061 2.8375 24 1 -0.3634 0.5913 -0.8405 25 1 -0.3633 -1.0235 -0.0919 26 1 -0.3634 0.4322 0.9324 27 1 2.0535 -0.7409 -3.2089 28 1 3.5966 0.9906 0.2056 29 1 4.2340 1.4184 1.8142 30 1 6.1023 0.8134 0.3588 31 1 5.3121 -0.7247 -0.0656 32 1 6.1890 0.0971 2.7405 33 1 7.8594 -1.7524 2.4255 34 1 7.3484 -1.8784 0.7252 35 1 11.3998 0.4634 0.2648 36 1 5.6334 -2.2644 3.2953 37 1 5.0407 -2.5058 1.6338 38 1 3.9315 -0.5473 3.6975 39 1 3.1319 -2.0194 3.0924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566235705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:56 Heat of formation + Delta-G solvation = -141.337491 kcal Electronic energy + Delta-G solvation = -21519.059700 eV Core-core repulsion = 18233.082593 eV Total energy + Delta-G solvation = -3285.977106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06200 -39.59248 -37.54930 -36.28495 -34.16360 -33.57205 -32.11471 -30.79926 -28.64683 -25.88833 -24.64676 -23.16098 -22.61822 -21.12409 -19.69436 -18.70647 -18.34471 -17.37559 -17.03255 -16.70785 -15.74915 -15.66718 -14.74971 -14.38138 -14.03997 -13.91889 -13.72098 -13.26431 -13.18832 -12.91620 -12.60020 -12.48296 -12.31910 -12.11383 -11.82480 -11.65557 -11.44810 -11.17895 -10.87849 -10.67418 -10.65450 -10.34515 -9.95609 -9.87403 -9.64381 -9.49038 -9.06990 -8.54286 -8.47310 -6.05569 -4.02776 1.96998 2.13275 2.95105 3.18276 3.30779 3.38378 3.42657 4.14917 4.45085 4.53304 4.64210 4.92832 5.07757 5.27154 5.28579 5.38381 5.40662 5.43107 5.50723 5.61045 5.66150 5.84163 5.88806 5.98962 6.25263 6.26607 6.29057 6.43201 6.58687 6.79122 6.85832 6.94372 7.26833 7.40068 7.45079 7.64387 7.79145 8.08629 8.52184 8.98586 9.58002 11.07626 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.004943 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.659960 B = 5662.839744 C = 6077.963012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 H 0.131 0.869 4 C 0.489 3.511 5 O -0.492 6.492 6 O -0.513 6.513 7 C 0.534 3.466 8 O -0.536 6.536 9 N -0.596 5.596 10 C 0.101 3.899 11 C -0.122 4.122 12 C -0.071 4.071 13 C -0.009 4.009 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.905 5.905 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.133 4.133 23 C 0.115 3.885 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.414 0.586 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.678 0.776 -1.975 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.131 4.131 3 H 0.148 0.852 4 C 0.329 3.671 5 O -0.378 6.378 6 O -0.325 6.325 7 C 0.320 3.680 8 O -0.413 6.413 9 N -0.328 5.328 10 C -0.021 4.021 11 C -0.159 4.159 12 C -0.089 4.089 13 C -0.047 4.047 14 C -0.553 4.553 15 H 0.091 0.909 16 C -0.134 4.134 17 N -0.544 5.544 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.171 4.171 23 C -0.007 4.007 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.274 0.726 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.809 0.317 -1.346 18.860 hybrid contribution 0.947 -1.109 -0.733 1.633 sum -17.862 -0.792 -2.079 18.000 Atomic orbital electron populations 1.21590 0.89356 1.04038 1.03685 1.21231 1.00515 1.02127 0.89219 0.85152 1.22684 0.77280 0.82716 0.84433 1.90835 1.34508 1.25373 1.87035 1.84465 1.72404 1.59077 1.16577 1.19611 0.81600 0.82287 0.84503 1.90678 1.55970 1.34711 1.59947 1.48085 1.14526 1.36506 1.33675 1.21927 0.92922 0.89660 0.97618 1.21843 0.93537 1.01603 0.98965 1.20989 0.95568 0.95885 0.96475 1.19616 0.92042 0.96935 0.96089 1.21128 0.95130 0.93943 1.45144 0.90863 1.25015 0.96876 0.96792 0.94759 1.69905 1.06522 1.31284 1.46672 0.86817 0.77826 0.85963 0.78909 1.20400 1.21474 1.19049 1.22068 0.94191 0.99249 1.01605 1.21675 0.95722 0.95918 0.87347 0.90488 0.91088 0.90517 0.72606 0.91083 0.90771 0.89136 0.92018 0.91683 0.96556 0.97086 0.92802 0.91018 0.91815 0.91459 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.54 37.15 0.32 -0.84 16 2 C -0.11 -1.20 2.33 -92.92 -0.22 -1.41 16 3 H 0.13 1.08 6.35 -51.93 -0.33 0.75 16 4 C 0.49 5.96 7.39 36.01 0.27 6.23 16 5 O -0.49 -8.05 16.79 -18.75 -0.31 -8.37 16 6 O -0.51 -4.46 13.35 -39.27 -0.52 -4.98 16 7 C 0.53 7.86 6.06 -10.99 -0.07 7.79 16 8 O -0.54 -9.38 15.61 5.55 0.09 -9.30 16 9 N -0.60 -8.69 2.98 -173.03 -0.52 -9.20 16 10 C 0.10 1.36 6.24 -3.93 -0.02 1.34 16 11 C -0.12 -2.11 5.17 -26.83 -0.14 -2.24 16 12 C -0.07 -1.33 2.10 -90.58 -0.19 -1.52 16 13 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 14 C -0.52 -14.12 8.94 -34.44 -0.31 -14.42 16 15 H 0.07 2.12 7.30 -52.49 -0.38 1.73 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 18 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 22 C -0.13 -2.20 5.36 -26.61 -0.14 -2.34 16 23 C 0.12 1.70 6.42 -3.70 -0.02 1.67 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.41 2.07 9.10 45.56 0.41 2.49 16 28 H 0.07 0.79 5.33 -51.93 -0.28 0.52 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.70 6.91 -51.93 -0.36 1.34 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 34 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.31 7.03 -51.93 -0.37 0.95 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -34.60 316.74 -6.15 -40.75 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.03 Total: 0.15 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.72 Total: -4.26 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.26 Total: -35.87 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.75 Total: -22.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.60 -6.15 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566235705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.588 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds