Wall clock time and date at job start Mon Mar 30 2020 01:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47121 * 2 1 4 4 C 1.50702 * 109.47400 * 240.00089 * 2 1 3 5 5 O 1.20822 * 119.99972 * 240.00346 * 4 2 1 6 6 O 1.34235 * 120.00044 * 59.99509 * 4 2 1 7 7 C 1.50701 * 109.47358 * 119.99604 * 2 1 3 8 8 O 1.21283 * 119.99477 * 23.64244 * 7 2 1 9 9 N 1.34768 * 119.99992 * 203.63955 * 7 2 1 10 10 C 1.46926 * 120.63325 * 4.74841 * 9 7 2 11 11 C 1.52764 * 109.00709 * 233.58391 * 10 9 7 12 12 C 1.53045 * 109.38285 * 305.58623 * 11 10 9 13 13 C 1.52998 * 109.44968 * 181.25869 * 12 11 10 14 14 C 1.50693 * 109.47286 * 64.93662 * 13 12 11 15 15 H 1.07999 * 120.00539 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99798 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00005 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00023 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47226 * 90.00468 * 18 16 14 20 20 H 1.48507 * 109.47043 * 210.00198 * 18 16 14 21 21 H 1.48501 * 109.47143 * 330.00178 * 18 16 14 22 22 C 1.53035 * 109.54059 * 61.23921 * 12 11 10 23 23 C 1.46933 * 120.62959 * 185.02347 * 9 7 2 24 24 H 1.09001 * 109.47667 * 54.87110 * 1 2 3 25 25 H 1.09000 * 109.47172 * 174.87179 * 1 2 3 26 26 H 1.09001 * 109.47387 * 294.86931 * 1 2 3 27 27 H 0.96694 * 117.00159 * 180.02562 * 6 4 2 28 28 H 1.08995 * 109.58809 * 353.41484 * 10 9 7 29 29 H 1.09000 * 109.58811 * 113.84127 * 10 9 7 30 30 H 1.09002 * 109.56525 * 185.55281 * 11 10 9 31 31 H 1.08998 * 109.36624 * 65.49605 * 11 10 9 32 32 H 1.09004 * 109.45648 * 301.21906 * 12 11 10 33 33 H 1.08997 * 109.47113 * 184.93753 * 13 12 11 34 34 H 1.09004 * 109.46669 * 304.93206 * 13 12 11 35 35 H 0.96993 * 120.00254 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.50427 * 178.68188 * 22 12 11 37 37 H 1.09004 * 109.49894 * 58.58530 * 22 12 11 38 38 H 1.08998 * 109.58813 * 246.15693 * 23 9 7 39 39 H 1.08996 * 109.58294 * 6.44174 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7269 -1.6928 -1.1196 6 8 1.7080 -0.2518 -2.4497 7 6 2.0323 -0.7103 1.2305 8 8 1.3273 -1.5213 1.7928 9 7 3.2650 -0.4444 1.7060 10 6 4.0905 0.6085 1.0989 11 6 5.4479 0.0196 0.7190 12 6 6.0762 -0.6423 1.9476 13 6 7.4496 -1.2052 1.5766 14 6 8.3756 -0.0729 1.2145 15 1 8.0203 0.9465 1.2462 16 6 9.6766 -0.3382 0.8426 17 7 10.4846 0.6500 0.5261 18 14 10.2914 -2.1013 0.7884 19 1 10.0519 -2.6677 -0.5633 20 1 11.7462 -2.1275 1.0854 21 1 9.5649 -2.9102 1.7999 22 6 5.1740 -1.7784 2.4346 23 6 3.8113 -1.2061 2.8375 24 1 -0.3634 0.5913 -0.8405 25 1 -0.3633 -1.0235 -0.0919 26 1 -0.3634 0.4322 0.9324 27 1 2.0535 -0.7409 -3.2089 28 1 3.5966 0.9906 0.2056 29 1 4.2340 1.4184 1.8142 30 1 6.1023 0.8134 0.3588 31 1 5.3121 -0.7247 -0.0656 32 1 6.1890 0.0971 2.7405 33 1 7.8594 -1.7524 2.4255 34 1 7.3484 -1.8784 0.7252 35 1 11.3998 0.4634 0.2648 36 1 5.6334 -2.2644 3.2953 37 1 5.0407 -2.5058 1.6338 38 1 3.9315 -0.5473 3.6975 39 1 3.1319 -2.0194 3.0924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566235705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:56 Heat of formation + Delta-G solvation = -165.582587 kcal Electronic energy + Delta-G solvation = -21520.111046 eV Core-core repulsion = 18233.082593 eV Total energy + Delta-G solvation = -3287.028453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.08116 -40.66299 -38.86604 -37.17805 -35.74409 -34.62225 -33.95016 -32.03345 -30.37159 -26.98060 -25.95481 -24.37741 -23.94848 -22.55034 -21.10052 -19.88756 -19.25329 -18.87829 -18.39111 -17.97812 -16.80220 -16.68111 -16.38423 -15.87668 -15.36510 -15.22364 -14.96119 -14.71463 -14.42891 -14.19052 -14.05898 -13.67384 -13.46334 -13.24208 -13.02588 -12.90022 -12.66908 -12.57411 -12.43692 -12.16387 -12.00340 -11.75133 -11.62548 -11.42669 -11.27693 -10.96597 -10.87126 -10.73349 -9.68570 -8.26755 -6.27595 1.04879 1.12637 1.33497 1.35554 1.46312 1.89495 2.27091 2.36189 3.08970 3.15493 3.72963 3.75443 3.94813 4.01397 4.04756 4.14531 4.21678 4.37487 4.50297 4.61500 4.74571 4.77010 4.81723 4.82988 4.90295 5.05242 5.14691 5.18579 5.20983 5.31949 5.38101 5.50264 5.54998 5.70192 5.72293 6.29470 6.33463 6.79214 6.85630 6.97291 7.36315 8.89229 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.004943 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.659960 B = 5662.839744 C = 6077.963012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 H 0.165 0.835 4 C 0.494 3.506 5 O -0.542 6.542 6 O -0.497 6.497 7 C 0.528 3.472 8 O -0.569 6.569 9 N -0.600 5.600 10 C 0.108 3.892 11 C -0.116 4.116 12 C -0.068 4.068 13 C -0.008 4.008 14 C -0.514 4.514 15 H 0.047 0.953 16 C 0.008 3.992 17 N -0.949 5.949 18 Si 0.937 3.063 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.252 1.252 22 C -0.124 4.124 23 C 0.117 3.883 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.432 0.568 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.016 0.984 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.276 1.000 -1.970 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.130 4.130 3 H 0.182 0.818 4 C 0.337 3.663 5 O -0.432 6.432 6 O -0.311 6.311 7 C 0.315 3.685 8 O -0.449 6.449 9 N -0.331 5.331 10 C -0.014 4.014 11 C -0.154 4.154 12 C -0.087 4.087 13 C -0.045 4.045 14 C -0.552 4.552 15 H 0.065 0.935 16 C -0.189 4.189 17 N -0.590 5.590 18 Si 0.762 3.238 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.176 1.176 22 C -0.162 4.162 23 C -0.005 4.005 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.294 0.706 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.431 0.559 -1.364 20.484 hybrid contribution 1.424 -1.117 -0.791 1.975 sum -19.007 -0.559 -2.155 19.137 Atomic orbital electron populations 1.21616 0.87679 1.03536 1.05326 1.21326 1.01781 1.02950 0.86900 0.81832 1.22897 0.76094 0.81807 0.85540 1.90831 1.36980 1.27627 1.87791 1.84423 1.71735 1.58719 1.16202 1.20241 0.81217 0.81855 0.85146 1.90659 1.56879 1.36181 1.61164 1.48188 1.14752 1.36602 1.33570 1.21933 0.90614 0.89424 0.99422 1.21700 0.95603 1.00421 0.97701 1.20913 0.93757 0.96726 0.97263 1.19581 0.93881 0.95464 0.95601 1.21434 0.95712 0.94091 1.43925 0.93490 1.25852 0.97355 1.00841 0.94829 1.70035 1.07025 1.33519 1.48456 0.85850 0.77464 0.81154 0.79326 1.19972 1.21016 1.17580 1.21946 0.94979 0.97948 1.01327 1.21633 0.94201 0.96392 0.88243 0.87710 0.92899 0.89763 0.70589 0.88350 0.88620 0.91137 0.93931 0.91365 0.96569 0.97819 0.92714 0.89876 0.93654 0.89285 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.54 71.98 0.62 -1.26 16 2 C -0.11 -2.08 2.33 -12.29 -0.03 -2.11 16 3 H 0.16 2.01 6.35 -2.38 -0.02 2.00 16 4 C 0.49 11.09 7.39 71.24 0.53 11.62 16 5 O -0.54 -17.47 16.79 21.97 0.37 -17.10 16 6 O -0.50 -7.25 13.35 -51.46 -0.69 -7.93 16 7 C 0.53 14.62 6.06 87.66 0.53 15.15 16 8 O -0.57 -19.44 15.61 -3.04 -0.05 -19.49 16 9 N -0.60 -16.34 2.98 -819.73 -2.44 -18.78 16 10 C 0.11 2.65 6.24 86.22 0.54 3.19 16 11 C -0.12 -3.97 5.17 30.53 0.16 -3.81 16 12 C -0.07 -2.51 2.10 -10.77 -0.02 -2.54 16 13 C -0.01 -0.37 3.52 29.85 0.10 -0.26 16 14 C -0.51 -28.51 8.94 25.60 0.23 -28.28 16 15 H 0.05 2.79 7.30 -2.91 -0.02 2.77 16 16 C 0.01 0.46 5.47 84.66 0.46 0.92 16 17 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 18 Si 0.94 44.87 27.47 68.60 1.88 46.75 16 19 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 22 C -0.12 -3.96 5.36 30.67 0.16 -3.80 16 23 C 0.12 3.26 6.42 86.36 0.55 3.82 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 1.00 8.04 -2.39 -0.02 0.98 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.43 3.27 9.10 -74.06 -0.67 2.60 16 28 H 0.10 1.88 5.33 -2.39 -0.01 1.86 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.68 6.91 -2.39 -0.02 2.66 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 34 H 0.00 0.17 7.57 -2.38 -0.02 0.15 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.38 7.03 -2.39 -0.02 2.36 16 Total: -1.00 -76.37 316.74 3.54 -72.83 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.33 Total: 9.41 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 3.83 Total: -7.36 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -2.14 Total: -77.11 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.37 Total: -44.53 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -76.37 3.54 -72.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566235705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.752 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds